RchiOBHm_Chr7g0237081

domain in FBox and BRCT domain containing plant proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003191
Physical Location & Seq
Reverse (-)
61959410 .. 61960425
1016 bp
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UTR
Exon/CDS
Intron
PRQ21247

Sequence Viewer

Length: 426 bp
ATGGCTTCGAATTCCAAGAGTCAATTGCGAGTTACAGATAGAATCAGTGACTTACCAGATTCACTTCTTTGTCACATCCTTTCCTTTATTCCAACAAAGTACTCTGTGAGCACCAGCAGTTTGTCTACAAGGTGGAAGAGAGTCTGGGCCTCTGTTCCCTGTCTAGAGTTTTATGACGGACTTTTCCCGGACTTTGAAAGTTTTGTGTTGTACTTTACTTTCGTAACTCATCAAACATTCAAAAGTTCAAACTTGAATGCTACAATGCTGAGTGTTTCTTTCATATTGATGGTTGGATTCGCATTGCCATTATGCATAATCCTGTTGAACTTGATCTTTGTGTTGAAAAAGATGGATCACATTCAGAGGACGAGTGTCTCGAGTTGCCTAAGAGCCTTTTCATGTGCAAAACACTGTTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

141

Amino Acids

16.03

Weight (kDa)

9.02

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 15 - 54 4.4e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 125
AclWI GGATC 1 cut(s) 363
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 2 cut(s) 101, 212
AgsI TTSAA 6 cut(s) 197, 241, 249, 256, 328, 346
Alw21I GWGCWC 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 1 cut(s) 363
Ama87I CYCGRG 1 cut(s) 379
AoxI GGCC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 147
AsuC2I CCSGG 1 cut(s) 188
AsuII TTCGAA 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 379
Bbv12I GWGCWC 1 cut(s) 113
BccI CCATC 2 cut(s) 283, 346
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 1 cut(s) 382
BfaI CTAG 1 cut(s) 164
BmcAI AGTACT 1 cut(s) 101
Bme1390I CCNGG 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 188
BoxI GACNNNNGTC 1 cut(s) 374
Bpu14I TTCGAA 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 302
BseGI GGATG 1 cut(s) 75
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 260
BshFI GGCC 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 379
BsiSI CCGG 1 cut(s) 188
BsmAI GTCTC 1 cut(s) 382
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 379
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 333, 355
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 261
BspPI GGATC 1 cut(s) 363
BspT104I TTCGAA 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 302
BssMI GATC 2 cut(s) 333, 355
Bst4CI ACNGT 1 cut(s) 416
Bst6I CTCTTC 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 269, 389
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 2 cut(s) 336, 358
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 2 cut(s) 333, 355
BstPAI GACNNNNGTC 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 186
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 52, 412
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 2 cut(s) 100, 211
CviAII CATG 1 cut(s) 402
CviJI RGCY 3 cut(s) 5, 149, 395
CviKI_1 RGCY 3 cut(s) 5, 149, 395
CviQI GTAC 2 cut(s) 100, 211
DdeI CTNAG 2 cut(s) 269, 389
DpnI GATC 2 cut(s) 335, 357
DpnII GATC 2 cut(s) 333, 355
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco88I CYCGRG 1 cut(s) 379
EcoRI GAATTC 1 cut(s) 10
EcoT22I ATGCAT 1 cut(s) 317
FaeI CATG 1 cut(s) 405
FaiI YATR 5 cut(s) 174, 284, 313, 317, 403
FatI CATG 1 cut(s) 401
FblI GTMKAC 1 cut(s) 125
FokI GGATG 1 cut(s) 62
FspBI CTAG 1 cut(s) 164
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 188
Hin1II CATG 1 cut(s) 405
HinfI GANTC 5 cut(s) 19, 42, 59, 141, 297
HpaII CCGG 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 366
Hpy188III TCNNGA 2 cut(s) 164, 379
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 315, 407
HpyF3I CTNAG 2 cut(s) 269, 389
Hsp92II CATG 1 cut(s) 405
Kzo9I GATC 2 cut(s) 333, 355
LpnPI CCDG 6 cut(s) 69, 127, 130, 172, 201, 335
MaeI CTAG 1 cut(s) 164
MaeIII GTNAC 4 cut(s) 31, 47, 71, 223
MalI GATC 2 cut(s) 335, 357
MboI GATC 2 cut(s) 333, 355
MboII GAAGA 1 cut(s) 148
MfeI CAATTG 1 cut(s) 23
MhlI GDGCHC 1 cut(s) 113
MluCI AATT 2 cut(s) 10, 23
MlyI GAGTC 2 cut(s) 28, 150
MmeI TCCRAC 2 cut(s) 116, 274
MnlI CCTC 2 cut(s) 160, 360
Mph1103I ATGCAT 1 cut(s) 317
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 262
NciI CCSGG 1 cut(s) 188
NdeII GATC 2 cut(s) 333, 355
NlaIII CATG 1 cut(s) 405
NmuCI GTSAC 2 cut(s) 47, 71
NsiI ATGCAT 1 cut(s) 317
NspV TTCGAA 1 cut(s) 8
PaeR7I CTCGAG 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 3 cut(s) 42, 59, 297
PfoI TCCNGGA 1 cut(s) 186
PleI GAGTC 2 cut(s) 27, 149
PpsI GAGTC 2 cut(s) 27, 149
PshAI GACNNNNGTC 1 cut(s) 374
PspPI GGNCC 1 cut(s) 147
RsaI GTAC 2 cut(s) 101, 212
RsaNI GTAC 2 cut(s) 100, 211
RseI CAYNNNNRTG 1 cut(s) 287
Sau3AI GATC 2 cut(s) 333, 355
Sau96I GGNCC 1 cut(s) 147
ScaI AGTACT 1 cut(s) 101
SchI GAGTC 2 cut(s) 28, 150
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 113
SetI ASST 1 cut(s) 134
Sfr274I CTCGAG 1 cut(s) 379
SfuI TTCGAA 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 2 cut(s) 10, 23
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 416
TaqI TCGA 2 cut(s) 8, 380
TasI AATT 2 cut(s) 10, 23
TatI WGTACW 2 cut(s) 99, 210
TfiI GAWTC 3 cut(s) 42, 59, 297
TscAI CASTG 2 cut(s) 52, 419
TseFI GTSAC 2 cut(s) 47, 71
Tsp45I GTSAC 2 cut(s) 47, 71
TspDTI ATGAA 2 cut(s) 271, 390
TspGWI ACGGA 1 cut(s) 192
TspRI CASTG 2 cut(s) 52, 419
XapI RAATTY 1 cut(s) 10
XbaI TCTAGA 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 125
XspI CTAG 1 cut(s) 164
ZrmI AGTACT 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.