FvH4_3g20090

LRR-repeat protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
13220489 .. 13222189
1701 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20090.t1

Sequence Viewer

Length: 1335 bp
ATGATCAGCCAATTACCAGAAGACGTTCGCCGCCACATTCTCTCATTCTTATCTACTAAGCACGCGGTCTCTACTACCATCCTTTCAAGGAGTTGGAAAAACCTATGGACCTTGGCTTCAACCAAAAACCTAGAGCTTGACGACAGCCTACTACTCCACCCCGAAAGTAAGACTGAAACCATTCACCACCATCCTTCTTTATTCTCTGATTTCGTGAACAATGTTCTCGGGCTCATCAGTGTGCCGTCTATTCAAACACTCAAATTTTGTTGTTCCTACCCTTACGACCCAGATCATATACATTGTTGGTTACATAGGGCATGCAGTTACAATATCATCGAGGTTGATATCAGAGTATACAGTCAAAACCCTATCAAATTGCCTTCGAATTTGTATGGTAGCACTTGGCTGGTGGTACTGAAATTAAACGCCAATGTAAGTTTCAACTTTCGGGACTCCATCTCTTTTCCAAGACTCAAGGTGTTTTGGATAAAGGTGTATGACACAGACGATGTTAACTTGACTCAGAAGCTTTTCAGCGATCACATCTGCCCTATTCTTGAAGAGTTGTTCATCGAGGGTGAGATATTGGATGAAAATAGGAGAGTGGTTTTGTTGGTGATTTTGAGTTCTCAAGAGTCACTTGATCTCCACGATGACTTCTTGGCCAAGTATAGTGCTAAGCATTTGAAGGTTTTGGACCATGCAAATATTAGTATTGGATACCCCTGTGCGGATTATGCAGCATTTGATCTTTACGGCGATGGAAATCCCTCTAATCGTGCATTTGAGGTCCTGGAAGAGCTCTCAAGTGTCAAGTGCCTATCGTTATCTGGTGGCACTACAAAGGCTCTCAGTTGTTCCTATCAAACTGCGCAATGTACCGGTTTAGATGATGACGAAGAAGATGCATTACTCATCCGCTTGAGAAATTTCGAGCTGTACTTTCGATTTTTGACCTGTTTGGAGCTGGGTTTCCGTACCTGTGAGAGCTGGAGTTTATTGCCCTTGCTACTTCATAGCTCGCCCAATCTGGAGTATCTTGTCTTAAAAAAGGAATTGGACTTGACTAGTTATCGTTACAAAACAGTATTCTCCTGGAGGCCGGAAGGTCCTGTACCGGAATGCATGTTGCTTCACCTCAGAGAAATCGAAATCTGGGGATTTCAGGGGGAATCGCAGGAGTTGGAAATCATAGACTTCTTTTTGGGGCATGCAGATGTGTTGCAAAAGATGAGTATTCATGTCCAAGAATCATCACCAAAGATGATGTTTTCCAAGCATGTGTTACAAATCCCAACAGCTTCAGAAGCATGTCAAGTGGAAGTTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

445

Amino Acids

50.91

Weight (kDa)

5.31

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 37 8.7e-08 F-box domain
FBD PF08387 371 - 414 1.8e-10 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 876
AccI GTMKAC 1 cut(s) 357
AccII CGCG 1 cut(s) 65
AciI CCGC 4 cut(s) 31, 65, 734, 922
AcoI YGGCCR 1 cut(s) 666
AcsI RAATTY 3 cut(s) 263, 388, 931
AcuI CTGAAG 1 cut(s) 1290
AfaI GTAC 5 cut(s) 417, 883, 944, 982, 1119
AfiI CCNNNNNNNGG 1 cut(s) 733
AgeI ACCGGT 1 cut(s) 884
AgsI TTSAA 6 cut(s) 87, 120, 254, 445, 563, 691
AhlI ACTAGT 1 cut(s) 1070
AjnI CCWGG 2 cut(s) 795, 1097
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 8 cut(s) 136, 532, 805, 940, 970, 993, 1023, 1304
AluI AGCT 8 cut(s) 136, 532, 805, 940, 970, 993, 1023, 1304
Alw21I GWGCWC 1 cut(s) 807
Alw26I GTCTC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 2 cut(s) 666, 1103
ApeKI GCWGC 1 cut(s) 743
ApoI RAATTY 3 cut(s) 263, 388, 931
AsiGI ACCGGT 1 cut(s) 884
Asp700I GAANNNNTTC 3 cut(s) 24, 180, 533
AspLEI GCGC 1 cut(s) 877
AspS9I GGNCC 4 cut(s) 108, 700, 793, 1112
AsuHPI GGTGA 5 cut(s) 176, 593, 631, 1130, 1251
AsuII TTCGAA 1 cut(s) 386
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 4 cut(s) 108, 700, 793, 1112
BaeI ACNNNNGTAYC 2 cut(s) 715, 748
BalI TGGCCA 1 cut(s) 668
BanII GRGCYC 2 cut(s) 234, 807
BarI GAAGNNNNNNTAC 4 cut(s) 897, 929, 1101, 1133
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 807
BbvI GCAGC 1 cut(s) 755
BccI CCATC 4 cut(s) 86, 198, 467, 758
BceAI ACGGC 2 cut(s) 229, 775
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BciT130I CCWGG 2 cut(s) 797, 1099
BciVI GTATCC 1 cut(s) 716
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 73
BcuI ACTAGT 1 cut(s) 1070
BfaI CTAG 2 cut(s) 131, 1071
BfuI GTATCC 1 cut(s) 716
BisI GCNGC 2 cut(s) 31, 744
BlpI GCTNAGC 1 cut(s) 681
BlsI GCNGC 2 cut(s) 32, 745
Bme1390I CCNGG 2 cut(s) 797, 1099
Bme18I GGWCC 4 cut(s) 108, 700, 793, 1112
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 4 cut(s) 108, 700, 793, 1112
BmrFI CCNGG 2 cut(s) 797, 1099
BmsI GCATC 1 cut(s) 898
BpiI GAAGAC 1 cut(s) 27
BpmI CTGGAG 3 cut(s) 1015, 1055, 1120
Bpu1102I GCTNAGC 1 cut(s) 681
Bpu14I TTCGAA 1 cut(s) 386
BpuEI CTTGAG 4 cut(s) 461, 618, 793, 946
BsaBI GATNNNNATC 1 cut(s) 768
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 111
BsaWI WCCGGW 2 cut(s) 884, 1120
BsaXI ACNNNNNCTCC 2 cut(s) 633, 663
Bsc4I CCNNNNNNNGG 1 cut(s) 733
Bse118I RCCGGY 1 cut(s) 884
Bse3DI GCAATG 1 cut(s) 884
Bse8I GATNNNNATC 1 cut(s) 768
BseBI CCWGG 2 cut(s) 797, 1099
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 4 cut(s) 78, 190, 598, 918
BseJI GATNNNNATC 1 cut(s) 768
BseLI CCNNNNNNNGG 1 cut(s) 733
BseMI GCAATG 1 cut(s) 884
BseMII CTCAG 3 cut(s) 539, 868, 1156
BseXI GCAGC 1 cut(s) 755
BseYI CCCAGC 1 cut(s) 970
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 668, 1105
BshTI ACCGGT 1 cut(s) 884
BsiHKAI GWGCWC 1 cut(s) 807
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 3 cut(s) 885, 1106, 1121
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 733
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 1130
BsnI GGCC 2 cut(s) 668, 1105
Bso31I GGTCTC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 227
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 234, 807
Bsp143I GATC 5 cut(s) 3, 292, 541, 646, 751
Bsp1720I GCTNAGC 1 cut(s) 681
BspACI CCGC 4 cut(s) 31, 65, 734, 922
BspANI GGCC 2 cut(s) 668, 1105
BspCNI CTCAG 3 cut(s) 538, 867, 1155
BspFNI CGCG 1 cut(s) 65
BspQI GCTCTTC 1 cut(s) 795
BspT104I TTCGAA 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 884
BsrFI RCCGGY 1 cut(s) 884
BssAI RCCGGY 1 cut(s) 884
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 5 cut(s) 3, 292, 541, 646, 751
BssNAI GTATAC 1 cut(s) 358
BssT1I CCWWGG 1 cut(s) 111
Bst1107I GTATAC 1 cut(s) 358
Bst2UI CCWGG 2 cut(s) 797, 1099
Bst4CI ACNGT 2 cut(s) 362, 1090
Bst6I CTCTTC 2 cut(s) 558, 795
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 4 cut(s) 63, 322, 1025, 1215
BstDEI CTNAG 5 cut(s) 57, 525, 681, 854, 1142
BstF5I GGATG 4 cut(s) 78, 190, 598, 918
BstFNI CGCG 1 cut(s) 65
BstHHI GCGC 1 cut(s) 877
BstKTI GATC 5 cut(s) 6, 295, 544, 649, 754
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 5 cut(s) 3, 292, 541, 646, 751
BstMWI GCNNNNNNNGC 2 cut(s) 740, 1310
BstNI CCWGG 2 cut(s) 797, 1099
BstNSI RCATGY 5 cut(s) 324, 1132, 1217, 1286, 1317
BstSCI CCNGG 2 cut(s) 795, 1097
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 755
BstV2I GAAGAC 1 cut(s) 27
BstZ17I GTATAC 1 cut(s) 358
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 2 cut(s) 668, 1105
BtgZI GCGATG 1 cut(s) 777
BtsCI GGATG 4 cut(s) 78, 190, 598, 918
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 4 cut(s) 63, 322, 1025, 1215
CfoI GCGC 1 cut(s) 877
Cfr10I RCCGGY 1 cut(s) 884
Cfr13I GGNCC 4 cut(s) 108, 700, 793, 1112
Csp6I GTAC 5 cut(s) 416, 882, 943, 981, 1118
CspAI ACCGGT 1 cut(s) 884
CviAII CATG 7 cut(s) 321, 704, 1129, 1214, 1244, 1283, 1314
CviQI GTAC 5 cut(s) 416, 882, 943, 981, 1118
DdeI CTNAG 5 cut(s) 57, 525, 681, 854, 1142
DpnI GATC 5 cut(s) 5, 294, 543, 648, 753
DpnII GATC 5 cut(s) 3, 292, 541, 646, 751
EaeI YGGCCR 1 cut(s) 666
Eam1104I CTCTTC 2 cut(s) 558, 795
EarI CTCTTC 2 cut(s) 558, 795
Ecl136II GAGCTC 1 cut(s) 805
Eco130I CCWWGG 1 cut(s) 111
Eco24I GRGCYC 2 cut(s) 234, 807
Eco31I GGTCTC 1 cut(s) 73
Eco32I GATATC 1 cut(s) 349
Eco47I GGWCC 4 cut(s) 108, 700, 793, 1112
Eco53kI GAGCTC 1 cut(s) 805
Eco57I CTGAAG 1 cut(s) 1290
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 805
EcoO109I RGGNCCY 2 cut(s) 793, 1112
EcoRII CCWGG 2 cut(s) 795, 1097
EcoRV GATATC 1 cut(s) 349
EcoT14I CCWWGG 1 cut(s) 111
EcoT22I ATGCAT 2 cut(s) 913, 1130
EcoT38I GRGCYC 2 cut(s) 234, 807
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 7 cut(s) 324, 707, 1132, 1217, 1247, 1286, 1317
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 1 cut(s) 467
FatI CATG 7 cut(s) 320, 703, 1128, 1213, 1243, 1282, 1313
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 357
Fnu4HI GCNGC 2 cut(s) 31, 744
FokI GGATG 4 cut(s) 65, 177, 605, 905
FriOI GRGCYC 2 cut(s) 234, 807
Fsp4HI GCNGC 2 cut(s) 31, 744
FspBI CTAG 2 cut(s) 131, 1071
FspI TGCGCA 1 cut(s) 876
GlaI GCGC 1 cut(s) 876
GluI GCNGC 2 cut(s) 31, 744
GsaI CCCAGC 1 cut(s) 974
GsuI CTGGAG 3 cut(s) 1015, 1055, 1120
HaeIII GGCC 2 cut(s) 668, 1105
HapII CCGG 3 cut(s) 885, 1106, 1121
HhaI GCGC 1 cut(s) 877
Hin1II CATG 7 cut(s) 324, 707, 1132, 1217, 1247, 1286, 1317
Hin6I GCGC 1 cut(s) 875
HinP1I GCGC 1 cut(s) 875
HincII GTYRAC 1 cut(s) 517
HindII GTYRAC 1 cut(s) 517
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 6 cut(s) 455, 474, 523, 638, 1175, 1253
HpaI GTTAAC 1 cut(s) 517
HpaII CCGG 3 cut(s) 885, 1106, 1121
HphI GGTGA 5 cut(s) 176, 593, 631, 1130, 1251
Hpy166II GTNNAC 3 cut(s) 217, 358, 517
Hpy188I TCNGA 5 cut(s) 208, 353, 528, 1145, 1309
Hpy188III TCNNGA 5 cut(s) 214, 452, 560, 635, 1034
Hpy8I GTNNAC 3 cut(s) 217, 358, 517
HpyAV CCTTC 4 cut(s) 204, 393, 685, 1103
HpyCH4III ACNGT 2 cut(s) 362, 1090
HpyCH4IV ACGT 1 cut(s) 24
HpyCH4V TGCA 8 cut(s) 324, 707, 743, 785, 911, 1128, 1217, 1228
HpyF10VI GCNNNNNNNGC 2 cut(s) 740, 1310
HpyF3I CTNAG 5 cut(s) 57, 525, 681, 854, 1142
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 7 cut(s) 324, 707, 1132, 1217, 1247, 1286, 1317
HspAI GCGC 1 cut(s) 875
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 517
Kzo9I GATC 5 cut(s) 3, 292, 541, 646, 751
LguI GCTCTTC 1 cut(s) 795
LmnI GCTCC 1 cut(s) 967
Lsp1109I GCAGC 1 cut(s) 755
LweI GCATC 1 cut(s) 898
MaeI CTAG 2 cut(s) 131, 1071
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 5 cut(s) 309, 326, 639, 1079, 1287
MalI GATC 5 cut(s) 5, 294, 543, 648, 753
MboI GATC 5 cut(s) 3, 292, 541, 646, 751
MboII GAAGA 5 cut(s) 32, 575, 812, 914, 917
MhlI GDGCHC 2 cut(s) 234, 807
MlsI TGGCCA 1 cut(s) 668
MluCI AATT 7 cut(s) 11, 263, 377, 388, 422, 931, 1058
MluNI TGGCCA 1 cut(s) 668
MlyI GAGTC 4 cut(s) 449, 468, 517, 647
MmeI TCCRAC 2 cut(s) 74, 1167
MnlI CCTC 6 cut(s) 334, 571, 784, 784, 1095, 1151
Mox20I TGGCCA 1 cut(s) 668
Mph1103I ATGCAT 2 cut(s) 913, 1130
MroXI GAANNNNTTC 3 cut(s) 24, 180, 533
MscI TGGCCA 1 cut(s) 668
MseI TTAA 3 cut(s) 425, 516, 1049
MslI CAYNNNNRTG 2 cut(s) 239, 1218
Msp20I TGGCCA 1 cut(s) 668
MspI CCGG 3 cut(s) 885, 1106, 1121
MspR9I CCNGG 2 cut(s) 797, 1099
Mva1269I GAATGC 1 cut(s) 1130
MvaI CCWGG 2 cut(s) 797, 1099
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 2 cut(s) 740, 1310
NdeII GATC 5 cut(s) 3, 292, 541, 646, 751
NlaIII CATG 7 cut(s) 324, 707, 1132, 1217, 1247, 1286, 1317
NmuCI GTSAC 1 cut(s) 639
NsbI TGCGCA 1 cut(s) 876
NsiI ATGCAT 2 cut(s) 913, 1130
NspI RCATGY 5 cut(s) 324, 1132, 1217, 1286, 1317
NspV TTCGAA 1 cut(s) 386
PaeI GCATGC 2 cut(s) 324, 1217
PciSI GCTCTTC 1 cut(s) 795
PctI GAATGC 1 cut(s) 1130
PdmI GAANNNNTTC 3 cut(s) 24, 180, 533
PfeI GAWTC 2 cut(s) 1175, 1253
PfoI TCCNGGA 2 cut(s) 795, 1097
PinAI ACCGGT 1 cut(s) 884
PkrI GCNGC 2 cut(s) 32, 745
PleI GAGTC 4 cut(s) 449, 468, 517, 646
PpsI GAGTC 4 cut(s) 449, 468, 517, 646
PpuMI RGGWCCY 2 cut(s) 793, 1112
Psp124BI GAGCTC 1 cut(s) 807
Psp5II RGGWCCY 2 cut(s) 793, 1112
Psp6I CCWGG 2 cut(s) 795, 1097
PspFI CCCAGC 1 cut(s) 970
PspGI CCWGG 2 cut(s) 795, 1097
PspPI GGNCC 4 cut(s) 108, 700, 793, 1112
PspPPI RGGWCCY 2 cut(s) 793, 1112
RsaI GTAC 5 cut(s) 417, 883, 944, 982, 1119
RsaNI GTAC 5 cut(s) 416, 882, 943, 981, 1118
RseI CAYNNNNRTG 2 cut(s) 239, 1218
SacI GAGCTC 1 cut(s) 807
SapI GCTCTTC 1 cut(s) 795
SaqAI TTAA 3 cut(s) 425, 516, 1049
SatI GCNGC 2 cut(s) 31, 744
Sau3AI GATC 5 cut(s) 3, 292, 541, 646, 751
Sau96I GGNCC 4 cut(s) 108, 700, 793, 1112
SchI GAGTC 4 cut(s) 449, 468, 517, 647
ScrFI CCNGG 2 cut(s) 797, 1099
SduI GDGCHC 2 cut(s) 234, 807
SfaNI GCATC 1 cut(s) 898
SfuI TTCGAA 1 cut(s) 386
SinI GGWCC 4 cut(s) 108, 700, 793, 1112
SmiMI CAYNNNNRTG 2 cut(s) 239, 1218
SmlI CTYRAG 4 cut(s) 476, 633, 808, 925
SmoI CTYRAG 4 cut(s) 476, 633, 808, 925
SpeI ACTAGT 1 cut(s) 1070
SphI GCATGC 2 cut(s) 324, 1217
Sse9I AATT 7 cut(s) 11, 263, 377, 388, 422, 931, 1058
SsiI CCGC 4 cut(s) 31, 65, 734, 922
SspI AATATT 1 cut(s) 712
SspMI CTAG 2 cut(s) 131, 1071
SstI GAGCTC 1 cut(s) 807
StyD4I CCNGG 2 cut(s) 795, 1097
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 362, 1090
TaiI ACGT 1 cut(s) 27
TaqI TCGA 6 cut(s) 339, 386, 576, 936, 949, 1152
TasI AATT 7 cut(s) 11, 263, 377, 388, 422, 931, 1058
TatI WGTACW 1 cut(s) 942
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 2 cut(s) 1175, 1253
Tru1I TTAA 3 cut(s) 425, 516, 1049
Tru9I TTAA 3 cut(s) 425, 516, 1049
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 639
TseI GCWGC 1 cut(s) 743
Tsp45I GTSAC 1 cut(s) 639
TspDTI ATGAA 4 cut(s) 562, 609, 1007, 1232
TspGWI ACGGA 1 cut(s) 968
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 4 cut(s) 108, 700, 793, 1112
XapI RAATTY 3 cut(s) 263, 388, 931
XceI RCATGY 5 cut(s) 324, 1132, 1217, 1286, 1317
XmiI GTMKAC 1 cut(s) 357
XmnI GAANNNNTTC 3 cut(s) 24, 180, 533
XspI CTAG 2 cut(s) 131, 1071
Zsp2I ATGCAT 2 cut(s) 913, 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.