RchiOBHm_Chr7g0197871

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0003191
Physical Location & Seq
Forward (+)
15686305 .. 15687108
804 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17700

Sequence Viewer

Length: 300 bp
ATGGCTTCAAACTCAACTCTTCGCAAATCACGCAATGAGGACAGGATCAGTGAGTTGCCAGATGCAATTCTTTGCCACATTCTCTCCTTCTTTTCAACCAGAGAGGCTGTAAAGACTAGCATTTTATCACATAGATGGAAGAATGTCTGGGCTTCTGTTCCCAATCTAGATTTCGATGAATATGAGCTAGCTTATGTTTTCCGTACTTTGCCGCAACCAGTAAGATATGAGTCAGATTGGTTTGCACAGTTTGTGAACCGTACGTGTACTTCTCAGTCGATGCCTGGGAAACATTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

99

Amino Acids

11.56

Weight (kDa)

7.83

Isoelectric Point (pI)

60.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 16 - 55 6.6e-09 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AclWI GGATC 1 cut(s) 53
AfaI GTAC 3 cut(s) 205, 262, 268
AflIII ACRYGT 1 cut(s) 263
AgsI TTSAA 2 cut(s) 9, 96
AjnI CCWGG 1 cut(s) 283
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 2 cut(s) 187, 191
AluI AGCT 2 cut(s) 187, 191
AlwI GGATC 1 cut(s) 53
AsuNHI GCTAGC 1 cut(s) 187
BarI GAAGNNNNNNTAC 2 cut(s) 253, 285
BccI CCATC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 285
BfaI CTAG 3 cut(s) 117, 167, 188
BisI GCNGC 1 cut(s) 212
BlsI GCNGC 1 cut(s) 213
Bme1390I CCNGG 1 cut(s) 285
BmrFI CCNGG 1 cut(s) 285
BmsI GCATC 2 cut(s) 52, 270
BmtI GCTAGC 1 cut(s) 191
BsaAI YACGTR 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bse1I ACTGG 1 cut(s) 218
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 287
BseNI ACTGG 1 cut(s) 218
BsiWI CGTACG 1 cut(s) 260
Bsp143I GATC 1 cut(s) 45
BspACI CCGC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 286
BspOI GCTAGC 1 cut(s) 191
BspPI GGATC 1 cut(s) 53
BsrDI GCAATG 1 cut(s) 40
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 2 cut(s) 249, 260
Bst6I CTCTTC 1 cut(s) 24
BstBAI YACGTR 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 1 cut(s) 273
BstKTI GATC 1 cut(s) 48
BstMBI GATC 1 cut(s) 45
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstNI CCWGG 1 cut(s) 285
BstSCI CCNGG 1 cut(s) 283
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 189
Csp6I GTAC 3 cut(s) 204, 261, 267
CviJI RGCY 5 cut(s) 5, 107, 152, 187, 191
CviKI_1 RGCY 5 cut(s) 5, 107, 152, 187, 191
CviQI GTAC 3 cut(s) 204, 261, 267
DdeI CTNAG 1 cut(s) 273
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 283
FaiI YATR 5 cut(s) 132, 183, 195, 228, 298
Fnu4HI GCNGC 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 212
FspBI CTAG 3 cut(s) 117, 167, 188
GluI GCNGC 1 cut(s) 212
HinfI GANTC 1 cut(s) 230
Hpy166II GTNNAC 2 cut(s) 256, 267
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 2 cut(s) 256, 267
HpyAV CCTTC 1 cut(s) 97
HpyCH4III ACNGT 2 cut(s) 249, 260
HpyCH4IV ACGT 1 cut(s) 263
HpyCH4V TGCA 2 cut(s) 65, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 263
Kzo9I GATC 1 cut(s) 45
LpnPI CCDG 6 cut(s) 28, 72, 112, 133, 231, 270
LweI GCATC 2 cut(s) 52, 270
MaeI CTAG 3 cut(s) 117, 167, 188
MaeII ACGT 1 cut(s) 263
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 2 cut(s) 11, 151
MluCI AATT 1 cut(s) 66
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 2 cut(s) 31, 97
MslI CAYNNNNRTG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 285
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 1 cut(s) 30
NdeII GATC 1 cut(s) 45
NheI GCTAGC 1 cut(s) 187
Pfl23II CGTACG 1 cut(s) 260
PkrI GCNGC 1 cut(s) 213
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 283
PspGI CCWGG 1 cut(s) 283
PspLI CGTACG 1 cut(s) 260
RsaI GTAC 3 cut(s) 205, 262, 268
RsaNI GTAC 3 cut(s) 204, 261, 267
RseI CAYNNNNRTG 1 cut(s) 133
SatI GCNGC 1 cut(s) 212
Sau3AI GATC 1 cut(s) 45
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 1 cut(s) 285
SetI ASST 3 cut(s) 189, 193, 266
SfaNI GCATC 2 cut(s) 52, 270
SmiMI CAYNNNNRTG 1 cut(s) 133
Sse9I AATT 1 cut(s) 66
SsiI CCGC 1 cut(s) 212
SspMI CTAG 3 cut(s) 117, 167, 188
StyD4I CCNGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 249, 260
TaiI ACGT 1 cut(s) 266
TaqI TCGA 2 cut(s) 174, 278
TasI AATT 1 cut(s) 66
TatI WGTACW 1 cut(s) 266
TauI GCSGC 1 cut(s) 214
TscAI CASTG 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 192, 285
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 55
XbaI TCTAGA 1 cut(s) 166
XspI CTAG 3 cut(s) 117, 167, 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.