Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003191

Physical Location & Seq

Genomic Coordinates Reverse (-)

10882666 .. 10885574

Gene Structure 2909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G183700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGATAAGACAGAGAAACCCAAGAACTCAAATTTCAAGCCCACGCCTTACAAAGAAAGCAAAACAAGAAGAGGAAGAAGACATGATTGCCAACTTACCAGACGATGTTCTTAGCCATATTCTCTCATTGTTACCAACCAAACATGCCGTGGCCACTACCGTTCTCTCCAAGAAATGGACCAACCTATGGACTTCTGCTTCCTTCTTCAAGCTCGACCTTGACGACAGACTATTACTGCGCCCCAAAAGCCTCACATCGATGCCTAATCACGCGTCCTTATTTGCCAACTTCGTGAACCACGTCCTTGGCCTCATCAATTTGCCATGCGTACAAAAAATCACCTTCTTTTGCTCCGACTCTTACGATTCGAATCTCATAAATTCTTGGTTGCTTGTTGCATGCACATCCAACGTTGTTGAGGTCGACATCAGAATTCCTTACACTCAAAATCCTATCGAATTGCCTCAAAGCTTGTATGCTAGTAGGTCGCTTCGGGTACTAAAACTAAATGCGAATATAAGGCTGGATTTTCCTCCAGATTGCGTGTGTTTTCCGAGCCTAAAGGTTCTTTGGATAACAGTTTATAACCAAGATGGTATTACATTTACGCAAAAGCTTTTCCATATCTGCTTTGTGCTTGAAGATCTGTTCATGGAGAGTGACATATTGAACAAGGAAAGGGAAGTGGTTTTCACGGTAAAATCGAATACACTTAAGAGGTTGAAGATTGAATGCTTGGTGCATAGTTTCGATATCGAGTATATCTTTGTGGTAGATTGCCCAAACCTTGAGCACCTTGATCTCTACGATGACTTCTTGGCCAAGTATAAAATCGCTACGGATTTGAAGGTACTTGATGATGCAAAGATTTGTATTGGACTCCCTTCTGCAGATTATGGTGCCTTTGAACTTTATTTCGAGGTAAAGCACTCTAACCGTGCTTTTGAGCTTCTTGAAGCACTCTCAAATGTCAAGTCCTTATCATTGTCTGGATGTACTACAGGGGCTGTCAGCTATTCCTATGAGACTGTGGAACACACTGATTCTGATGAAAATGAAGATGGAATTGCACTACGGATCCGCTTGAGAAATTTCATGCTCAAATTTCCTTTCCTTGGGCGTTTGGAGCTGGGTTTCCGCACCAGTGAGAGCTGGACCATATTGACCTTATTGCTACATAGCTCGCCTAATCTGCAGCATCTTATCTTGAGAAAGGAACTAAATGGATACTCTGTTGGGTATAAAAGATTTTCTTATGGAATGCCCAAAGGATCGGTGCCGGAATGTTTGTTGTGTCACCTTAAAGAAATGGAGATTTGGGGATTTGAGGGGGTGAAATATGACTTGCCAATGGTAGAGTTCTTTTTGGGGAATGCATTAGTCTTGCAAAAGATGAAAATTTATGTCCAAGAATTATCTTCAGATGAAGAGATTATGCTCAGCGAGCATGTGTTGGAAATTCCAAAAGTTTCAGATGCATGTCAGGTGGAGATAAAATATGAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

503

Amino Acids

57.62

Weight (kDa)

5.55

Isoelectric Point (pI)

43.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19070
fragaria_vesca	FvH4_3g18163 FvH4_3g20090
malus_domestica	MD00G1185900.v1.1 MD03G1225700.v1.1 MD03G1253900.v1.1
prunus_persica	Prupe.4G183700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345041 RchiOBHm_Chr3g0460671 RchiOBHm_Chr4g0417371 RchiOBHm_Chr5g0030621 RchiOBHm_Chr5g0033891 RchiOBHm_Chr6g0283051 RchiOBHm_Chr7g0197871 RchiOBHm_Chr7g0237061 RchiOBHm_Chr7g0237081
rosa_laevigata	RLG00000033508
rosa_multiflora	Rmu_co8513519.1_g000001 Rmu_sc0001150.1_g000016 Rmu_sc0008328.1_g000003 Rmu_sc0022678.1_g000006
rosa_roxburghii	Rroxscaffold_1G00046320 Rroxscaffold_4G00317750
rosa_rugosa	Rorug03G0129400.1 Rorug05G0143000 Rorug05G0333600 Rorug05G0333700 Rorug05G0333800
rosa_samantha	Rh5AG211200 Rh5AG233900 Rh5BG234500 Rh5CG264800 Rh5DG198300 Rh5DG241400 Rh6BG371200 Rh7AG457800
rosa_wichuraiana	Rw5G021540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	585
AccB1I	GGYRCC	2 cut(s)	899, 1276
AccB7I	CCANNNNNTGG	2 cut(s)	174, 186
AccI	GTMKAC	1 cut(s)	423
AccII	CGCG	1 cut(s)	272
AciI	CCGC	2 cut(s)	1081, 1138
AclI	AACGTT	1 cut(s)	411
AclWI	GGATC	3 cut(s)	1072, 1085, 1279
AcoI	YGGCCR	2 cut(s)	150, 819
AcsI	RAATTY	7 cut(s)	30, 379, 432, 1090, 1103, 1398, 1458
AcuI	CTGAAG	1 cut(s)	1404
AfaI	GTAC	4 cut(s)	330, 498, 852, 997
AfiI	CCNNNNNNNGG	3 cut(s)	174, 186, 1115
AflII	CTTAAG	1 cut(s)	713
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	9 cut(s)	36, 208, 641, 670, 724, 731, 847, 908, 956
AjiI	CACGTC	1 cut(s)	301
AluBI	AGCT	8 cut(s)	211, 471, 616, 949, 1014, 1129, 1152, 1182
AluI	AGCT	8 cut(s)	211, 471, 616, 949, 1014, 1129, 1152, 1182
Alw21I	GWGCWC	1 cut(s)	795
Alw26I	GTCTC	1 cut(s)	1019
AlwI	GGATC	3 cut(s)	1072, 1085, 1279
AlwNI	CAGNNNCTG	1 cut(s)	1007
AoxI	GGCC	3 cut(s)	150, 307, 819
ApeKI	GCWGC	1 cut(s)	1195
ApoI	RAATTY	7 cut(s)	30, 379, 432, 1090, 1103, 1398, 1458
ArsI	GACNNNNNNTTYG	2 cut(s)	959, 991
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	177, 1155
AsuHPI	GGTGA	3 cut(s)	331, 1289, 1345
AsuII	TTCGAA	1 cut(s)	368
AvaII	GGWCC	2 cut(s)	177, 1155
BalI	TGGCCA	2 cut(s)	152, 821
BamHI	GGATCC	1 cut(s)	1077
BanI	GGYRCC	2 cut(s)	899, 1276
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	795
BbvI	GCAGC	1 cut(s)	1207
BccI	CCATC	2 cut(s)	587, 1055
BceAI	ACGGC	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	1220
BcoDI	GTCTC	1 cut(s)	1019
BfaI	CTAG	1 cut(s)	480
BfmI	CTRYAG	3 cut(s)	888, 999, 1193
BfrI	CTTAAG	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	1220
BglII	AGATCT	1 cut(s)	643
BisI	GCNGC	1 cut(s)	1196
BlpI	GCTNAGC	1 cut(s)	1439
BlsI	GCNGC	1 cut(s)	1197
Bme18I	GGWCC	2 cut(s)	177, 1155
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	177, 1155
BmiI	GGNNCC	3 cut(s)	901, 1079, 1278
BmsI	GCATC	4 cut(s)	249, 850, 1207, 1465
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	519
Bpu1102I	GCTNAGC	1 cut(s)	1439
Bpu14I	TTCGAA	1 cut(s)	368
BpuEI	CTTGAG	3 cut(s)	809, 1105, 1228
Bsa29I	ATCGAT	1 cut(s)	257
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	147, 304, 1114
Bsc4I	CCNNNNNNNGG	3 cut(s)	174, 186, 1115
Bse1I	ACTGG	1 cut(s)	1143
Bse8I	GATNNNNATC	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	147, 304, 1114
BseGI	GGATG	2 cut(s)	404, 998
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	3 cut(s)	174, 186, 1115
BseMII	CTCAG	1 cut(s)	1453
BseNI	ACTGG	1 cut(s)	1143
BseXI	GCAGC	1 cut(s)	1207
BseYI	CCCAGC	1 cut(s)	1129
Bsh1236I	CGCG	1 cut(s)	272
BshFI	GGCC	3 cut(s)	152, 309, 821
BshNI	GGYRCC	2 cut(s)	899, 1276
BshVI	ATCGAT	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	795
BsiSI	CCGG	1 cut(s)	1280
BslI	CCNNNNNNNGG	3 cut(s)	174, 186, 1115
BsmAI	GTCTC	1 cut(s)	1019
BsmI	GAATGC	3 cut(s)	737, 1266, 1378
BsnI	GGCC	3 cut(s)	152, 309, 821
Bsp119I	TTCGAA	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	795
Bsp143I	GATC	4 cut(s)	643, 799, 1077, 1271
Bsp1720I	GCTNAGC	1 cut(s)	1439
BspACI	CCGC	2 cut(s)	1081, 1138
BspANI	GGCC	3 cut(s)	152, 309, 821
BspCNI	CTCAG	1 cut(s)	1452
BspDI	ATCGAT	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	272
BspLI	GGNNCC	3 cut(s)	901, 1079, 1278
BspMAI	CTGCAG	2 cut(s)	892, 1197
BspPI	GGATC	3 cut(s)	1072, 1085, 1279
BspT104I	TTCGAA	1 cut(s)	368
BspT107I	GGYRCC	2 cut(s)	899, 1276
BspTI	CTTAAG	1 cut(s)	713
BsrI	ACTGG	1 cut(s)	1143
BssECI	CCNNGG	3 cut(s)	147, 304, 1114
BssMI	GATC	4 cut(s)	643, 799, 1077, 1271
BssT1I	CCWWGG	2 cut(s)	304, 1114
Bst4CI	ACNGT	5 cut(s)	160, 580, 697, 938, 1030
Bst6I	CTCTTC	2 cut(s)	63, 1422
BstAFI	CTTAAG	1 cut(s)	713
BstBI	TTCGAA	1 cut(s)	368
BstC8I	GCNNGC	3 cut(s)	400, 1184, 1445
BstDEI	CTNAG	2 cut(s)	110, 1439
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	2 cut(s)	404, 998
BstFNI	CGCG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	4 cut(s)	646, 802, 1080, 1274
BstMAI	GTCTC	1 cut(s)	1019
BstMBI	GATC	4 cut(s)	643, 799, 1077, 1271
BstMWI	GCNNNNNNNGC	4 cut(s)	246, 1126, 1192, 1444
BstNSI	RCATGY	4 cut(s)	146, 402, 1451, 1482
BstSFI	CTRYAG	3 cut(s)	888, 999, 1193
BstUI	CGCG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	1207
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	2 cut(s)	643, 1077
BstXI	CCANNNNNNTGG	1 cut(s)	305
BstYI	RGATCY	2 cut(s)	643, 1077
Bsu15I	ATCGAT	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	1220
BsuRI	GGCC	3 cut(s)	152, 309, 821
BsuTUI	ATCGAT	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	147
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	404, 998
BtsIMutI	CAGTG	2 cut(s)	1038, 1150
Cac8I	GCNNGC	3 cut(s)	400, 1184, 1445
CaiI	CAGNNNCTG	1 cut(s)	1007
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	177, 1155
ClaI	ATCGAT	1 cut(s)	257
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	4 cut(s)	329, 497, 851, 996
CviAII	CATG	8 cut(s)	82, 143, 324, 399, 652, 1096, 1448, 1479
CviQI	GTAC	4 cut(s)	329, 497, 851, 996
DdeI	CTNAG	2 cut(s)	110, 1439
DpnI	GATC	4 cut(s)	645, 801, 1079, 1273
DpnII	GATC	4 cut(s)	643, 799, 1077, 1271
EaeI	YGGCCR	2 cut(s)	150, 819
Eam1104I	CTCTTC	2 cut(s)	63, 1422
EarI	CTCTTC	2 cut(s)	63, 1422
Eco130I	CCWWGG	2 cut(s)	304, 1114
Eco32I	GATATC	1 cut(s)	754
Eco47I	GGWCC	2 cut(s)	177, 1155
Eco57I	CTGAAG	1 cut(s)	1404
EcoRI	GAATTC	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	2 cut(s)	304, 1114
EcoT22I	ATGCAT	2 cut(s)	1378, 1480
ErhI	CCWWGG	2 cut(s)	304, 1114
FaeI	CATG	8 cut(s)	85, 146, 327, 402, 655, 1099, 1451, 1482
FalI	AAGNNNNNCTT	2 cut(s)	1237, 1269
FatI	CATG	8 cut(s)	81, 142, 323, 398, 651, 1095, 1447, 1478
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	1 cut(s)	1196
FokI	GGATG	2 cut(s)	391, 1005
Fsp4HI	GCNGC	1 cut(s)	1196
FspBI	CTAG	1 cut(s)	480
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	1196
GsaI	CCCAGC	1 cut(s)	1133
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	152, 309, 821
HapII	CCGG	1 cut(s)	1280
HgaI	GACGC	1 cut(s)	261
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	8 cut(s)	85, 146, 327, 402, 655, 1099, 1451, 1482
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HindIII	AAGCTT	2 cut(s)	469, 614
HinfI	GANTC	5 cut(s)	356, 365, 370, 879, 1043
HpaII	CCGG	1 cut(s)	1280
HphI	GGTGA	3 cut(s)	331, 1289, 1345
Hpy166II	GTNNAC	2 cut(s)	295, 424
Hpy188I	TCNGA	6 cut(s)	355, 431, 555, 1048, 1423, 1474
Hpy188III	TCNNGA	5 cut(s)	292, 536, 953, 990, 1207
Hpy8I	GTNNAC	2 cut(s)	295, 424
HpyAV	CCTTC	4 cut(s)	211, 352, 841, 894
HpyCH4III	ACNGT	5 cut(s)	160, 580, 697, 938, 1030
HpyCH4IV	ACGT	2 cut(s)	300, 411
HpyF10VI	GCNNNNNNNGC	4 cut(s)	246, 1126, 1192, 1444
HpyF3I	CTNAG	2 cut(s)	110, 1439
HpySE526I	ACGT	2 cut(s)	300, 411
Hsp92II	CATG	8 cut(s)	85, 146, 327, 402, 655, 1099, 1451, 1482
HspAI	GCGC	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	643, 799, 1077, 1271
LmnI	GCTCC	2 cut(s)	356, 1126
Lsp1109I	GCAGC	1 cut(s)	1207
LweI	GCATC	4 cut(s)	249, 850, 1207, 1465
MaeI	CTAG	1 cut(s)	480
MaeII	ACGT	2 cut(s)	300, 411
MaeIII	GTNAC	3 cut(s)	129, 659, 1295
MalI	GATC	4 cut(s)	645, 801, 1079, 1273
MboI	GATC	4 cut(s)	643, 799, 1077, 1271
MboII	GAAGA	9 cut(s)	80, 86, 89, 196, 653, 736, 1070, 1410, 1439
MflI	RGATCY	2 cut(s)	643, 1077
MhlI	GDGCHC	1 cut(s)	795
MlsI	TGGCCA	2 cut(s)	152, 821
MluI	ACGCGT	1 cut(s)	270
MluNI	TGGCCA	2 cut(s)	152, 821
MlyI	GAGTC	2 cut(s)	350, 873
MmeI	TCCRAC	3 cut(s)	378, 432, 1434
MnlI	CCTC	9 cut(s)	64, 260, 320, 412, 474, 543, 711, 913, 1321
Mox20I	TGGCCA	2 cut(s)	152, 821
Mph1103I	ATGCAT	2 cut(s)	1378, 1480
MscI	TGGCCA	2 cut(s)	152, 821
MseI	TTAA	3 cut(s)	714, 1302, 1507
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	2 cut(s)	152, 821
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	1 cut(s)	1280
Mva1269I	GAATGC	3 cut(s)	737, 1266, 1378
MvnI	CGCG	1 cut(s)	272
MwoI	GCNNNNNNNGC	4 cut(s)	246, 1126, 1192, 1444
NdeII	GATC	4 cut(s)	643, 799, 1077, 1271
NlaIII	CATG	8 cut(s)	85, 146, 327, 402, 655, 1099, 1451, 1482
NlaIV	GGNNCC	3 cut(s)	901, 1079, 1278
NmuCI	GTSAC	2 cut(s)	659, 1295
NsiI	ATGCAT	2 cut(s)	1378, 1480
NspI	RCATGY	4 cut(s)	146, 402, 1451, 1482
NspV	TTCGAA	1 cut(s)	368
PaeI	GCATGC	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	3 cut(s)	219, 297, 701
PctI	GAATGC	3 cut(s)	737, 1266, 1378
PfeI	GAWTC	3 cut(s)	365, 370, 1043
PflMI	CCANNNNNTGG	2 cut(s)	174, 186
PkrI	GCNGC	1 cut(s)	1197
PleI	GAGTC	2 cut(s)	350, 873
PpsI	GAGTC	2 cut(s)	350, 873
PsiI	TTATAA	1 cut(s)	585
Psp1406I	AACGTT	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	1129
PspN4I	GGNNCC	3 cut(s)	901, 1079, 1278
PspPI	GGNCC	2 cut(s)	177, 1155
PstI	CTGCAG	2 cut(s)	892, 1197
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	2 cut(s)	643, 1077
RsaI	GTAC	4 cut(s)	330, 498, 852, 997
RsaNI	GTAC	4 cut(s)	329, 497, 851, 996
RseI	CAYNNNNRTG	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	422
SaqAI	TTAA	3 cut(s)	714, 1302, 1507
SatI	GCNGC	1 cut(s)	1196
Sau3AI	GATC	4 cut(s)	643, 799, 1077, 1271
Sau96I	GGNCC	2 cut(s)	177, 1155
SchI	GAGTC	2 cut(s)	350, 873
SduI	GDGCHC	1 cut(s)	795
SfaNI	GCATC	4 cut(s)	249, 850, 1207, 1465
SfcI	CTRYAG	3 cut(s)	888, 999, 1193
SfuI	TTCGAA	1 cut(s)	368
SinI	GGWCC	2 cut(s)	177, 1155
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	4 cut(s)	713, 788, 1084, 1207
SmoI	CTYRAG	4 cut(s)	713, 788, 1084, 1207
SphI	GCATGC	1 cut(s)	402
SsiI	CCGC	2 cut(s)	1081, 1138
SspI	AATATT	1 cut(s)	1505
SspMI	CTAG	1 cut(s)	480
StyI	CCWWGG	2 cut(s)	304, 1114
TaaI	ACNGT	5 cut(s)	160, 580, 697, 938, 1030
TaiI	ACGT	2 cut(s)	303, 414
TaqI	TCGA	9 cut(s)	213, 257, 368, 423, 456, 704, 750, 756, 918
TatI	WGTACW	1 cut(s)	995
TfiI	GAWTC	3 cut(s)	365, 370, 1043
Tru1I	TTAA	3 cut(s)	714, 1302, 1507
Tru9I	TTAA	3 cut(s)	714, 1302, 1507
TscAI	CASTG	2 cut(s)	1045, 1150
TseFI	GTSAC	2 cut(s)	659, 1295
TseI	GCWGC	1 cut(s)	1195
Tsp45I	GTSAC	2 cut(s)	659, 1295
TspDTI	ATGAA	6 cut(s)	640, 1065, 1071, 1084, 1409, 1440
TspGWI	ACGGA	2 cut(s)	854, 1090
TspRI	CASTG	2 cut(s)	1045, 1150
Van91I	CCANNNNNTGG	2 cut(s)	174, 186
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	2 cut(s)	177, 1155
XapI	RAATTY	7 cut(s)	30, 379, 432, 1090, 1103, 1398, 1458
XceI	RCATGY	4 cut(s)	146, 402, 1451, 1482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	1 cut(s)	480
Zsp2I	ATGCAT	2 cut(s)	1378, 1480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.