Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008328.1

Orthogroup ID

OG0003191

Physical Location & Seq

Genomic Coordinates Forward (+)

11204 .. 11944

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008328.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgcccagaggggttgggatcgtggagttggatgacgtcatcctctggtggtccaacggtgggacagagcggcggcggaggaggccgacatcgacgaacatcaatttggaaatgggttcgaactccaactcaaagcgtggtgaagataggatcagtggcttacccgccacaattctttgtcatatcctttccttcctcgccacggttgatgctgtgaggaccagcattctatctcatcgactggaaaaaagttgtgggtgtttgttcccactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

91

Amino Acids

10.09

Weight (kDa)

9.15

Isoelectric Point (pI)

74.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19070
fragaria_vesca	FvH4_3g18163 FvH4_3g20090
malus_domestica	MD00G1185900.v1.1 MD03G1225700.v1.1 MD03G1253900.v1.1
prunus_persica	Prupe.4G183700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345041 RchiOBHm_Chr3g0460671 RchiOBHm_Chr4g0417371 RchiOBHm_Chr5g0030621 RchiOBHm_Chr5g0033891 RchiOBHm_Chr6g0283051 RchiOBHm_Chr7g0197871 RchiOBHm_Chr7g0237061 RchiOBHm_Chr7g0237081
rosa_laevigata	RLG00000033508
rosa_multiflora	Rmu_co8513519.1_g000001 Rmu_sc0001150.1_g000016 Rmu_sc0008328.1_g000003 Rmu_sc0022678.1_g000006
rosa_roxburghii	Rroxscaffold_1G00046320 Rroxscaffold_4G00317750
rosa_rugosa	Rorug03G0129400.1 Rorug05G0143000 Rorug05G0333600 Rorug05G0333700 Rorug05G0333800
rosa_samantha	Rh5AG211200 Rh5AG233900 Rh5BG234500 Rh5CG264800 Rh5DG198300 Rh5DG241400 Rh6BG371200 Rh7AG457800
rosa_wichuraiana	Rw5G021540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	70
AciI	CCGC	4 cut(s)	70, 73, 76, 165
AclWI	GGATC	2 cut(s)	26, 158
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	60, 202
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AlwI	GGATC	2 cut(s)	26, 158
AoxI	GGCC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	51, 219
AsuHPI	GGTGA	1 cut(s)	152
AsuII	TTCGAA	1 cut(s)	119
AvaII	GGWCC	2 cut(s)	51, 219
BisI	GCNGC	2 cut(s)	71, 74
BlsI	GCNGC	2 cut(s)	72, 75
Bme18I	GGWCC	2 cut(s)	51, 219
BmgT120I	GGNCC	2 cut(s)	51, 219
BmsI	GCATC	1 cut(s)	199
Bpu14I	TTCGAA	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 202
Bse1I	ACTGG	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	2 cut(s)	37, 39
BseLI	CCNNNNNNNGG	2 cut(s)	60, 202
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	94
BshFI	GGCC	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	2 cut(s)	60, 202
BsmFI	GGGAC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	85
Bsp119I	TTCGAA	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	18, 150
BspACI	CCGC	4 cut(s)	70, 73, 76, 165
BspANI	GGCC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	26, 158
BspT104I	TTCGAA	1 cut(s)	119
BsrBI	CCGCTC	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	2 cut(s)	18, 150
BssNI	GRCGYC	1 cut(s)	36
Bst4CI	ACNGT	2 cut(s)	59, 205
BstACI	GRCGYC	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	119
BstDSI	CCRYGG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	37, 39
BstKTI	GATC	2 cut(s)	21, 153
BstMBI	GATC	2 cut(s)	18, 150
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	85
BtgI	CCRYGG	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	37, 39
BtsIMutI	CAGTG	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	51, 219
CviJI	RGCY	2 cut(s)	85, 159
CviKI_1	RGCY	2 cut(s)	85, 159
DpnI	GATC	2 cut(s)	20, 152
DpnII	GATC	2 cut(s)	18, 150
EciI	GGCGGA	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	51, 219
FaiI	YATR	1 cut(s)	183
FaqI	GGGAC	1 cut(s)	76
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	71, 74
FokI	GGATG	2 cut(s)	26, 44
Fsp4HI	GCNGC	2 cut(s)	71, 74
GluI	GCNGC	2 cut(s)	71, 74
HaeIII	GGCC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	36
HphI	GGTGA	1 cut(s)	152
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	1 cut(s)	202
HpyCH4III	ACNGT	2 cut(s)	59, 205
HpyCH4IV	ACGT	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	18, 150
LpnPI	CCDG	4 cut(s)	19, 31, 227, 235
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	36
MalI	GATC	2 cut(s)	20, 152
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	2 cut(s)	18, 150
MboII	GAAGA	1 cut(s)	155
MluCI	AATT	2 cut(s)	103, 171
MmeI	TCCRAC	3 cut(s)	9, 78, 150
MnlI	CCTC	5 cut(s)	53, 72, 75, 206, 210
Mva1269I	GAATGC	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	82
NdeII	GATC	2 cut(s)	18, 150
NspV	TTCGAA	1 cut(s)	119
PctI	GAATGC	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	72, 75
PspPI	GGNCC	2 cut(s)	51, 219
SatI	GCNGC	2 cut(s)	71, 74
Sau3AI	GATC	2 cut(s)	18, 150
Sau96I	GGNCC	2 cut(s)	51, 219
SetI	ASST	1 cut(s)	39
SfaNI	GCATC	1 cut(s)	199
SfuI	TTCGAA	1 cut(s)	119
SgeI	CNNG	9 cut(s)	18, 34, 58, 149, 176, 209, 214, 234, 254
SinI	GGWCC	2 cut(s)	51, 219
Sse9I	AATT	2 cut(s)	103, 171
SsiI	CCGC	4 cut(s)	70, 73, 76, 165
TaaI	ACNGT	2 cut(s)	59, 205
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	3 cut(s)	92, 119, 238
TasI	AATT	2 cut(s)	103, 171
TauI	GCSGC	2 cut(s)	73, 76
TscAI	CASTG	1 cut(s)	160
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	2 cut(s)	51, 219
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.