Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003191

Physical Location & Seq

Genomic Coordinates Reverse (-)

24933628 .. 24933910

Gene Structure 283 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG211200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAACATCAATTTGGAAATGGGTTCAAACTCCAACTCAAAGCGTGGTGAAGATAGGATCGGTGGCTTACCCGACGCAATTCTTTGTCATATCCTTTCCTTCCTCGCCACGGTTGATGCTGTGAGGACCAACATTCTATCTCATCGATGGGAAAAGTTGTGGGTGTCTGTTCCCACTTTAGACCTACGTGATGACGGTTTTGATCAAGAAAAAGAAGAGTATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

75

Amino Acids

8.54

Weight (kDa)

4.77

Isoelectric Point (pI)

64.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19070
fragaria_vesca	FvH4_3g18163 FvH4_3g20090
malus_domestica	MD00G1185900.v1.1 MD03G1225700.v1.1 MD03G1253900.v1.1
prunus_persica	Prupe.4G183700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345041 RchiOBHm_Chr3g0460671 RchiOBHm_Chr4g0417371 RchiOBHm_Chr5g0030621 RchiOBHm_Chr5g0033891 RchiOBHm_Chr6g0283051 RchiOBHm_Chr7g0197871 RchiOBHm_Chr7g0237061 RchiOBHm_Chr7g0237081
rosa_laevigata	RLG00000033508
rosa_multiflora	Rmu_co8513519.1_g000001 Rmu_sc0001150.1_g000016 Rmu_sc0008328.1_g000003 Rmu_sc0022678.1_g000006
rosa_roxburghii	Rroxscaffold_1G00046320 Rroxscaffold_4G00317750
rosa_rugosa	Rorug03G0129400.1 Rorug05G0143000 Rorug05G0333600 Rorug05G0333700 Rorug05G0333800
rosa_samantha	Rh5AG211200 Rh5AG233900 Rh5BG234500 Rh5CG264800 Rh5DG198300 Rh5DG241400 Rh6BG371200 Rh7AG457800
rosa_wichuraiana	Rw5G021540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	109
AgsI	TTSAA	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AlwI	GGATC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	126
BccI	CCATC	1 cut(s)	141
BclI	TGATCA	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	126
BmsI	GCATC	1 cut(s)	106
Bsa29I	ATCGAT	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	188
BsaJI	CCNNGG	1 cut(s)	108
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
BseCI	ATCGAT	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	109
BshVI	ATCGAT	1 cut(s)	145
BslI	CCNNNNNNNGG	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	57, 202
BspDI	ATCGAT	1 cut(s)	145
BspPI	GGATC	1 cut(s)	65
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	57, 202
Bst4CI	ACNGT	2 cut(s)	112, 197
Bst6I	CTCTTC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	60, 205
BstMBI	GATC	2 cut(s)	57, 202
Bsu15I	ATCGAT	1 cut(s)	145
BsuTUI	ATCGAT	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	108
Cfr13I	GGNCC	1 cut(s)	126
ClaI	ATCGAT	1 cut(s)	145
CseI	GACGC	1 cut(s)	83
CviJI	RGCY	1 cut(s)	66
CviKI_1	RGCY	1 cut(s)	66
DpnI	GATC	2 cut(s)	59, 204
DpnII	GATC	2 cut(s)	57, 202
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco47I	GGWCC	1 cut(s)	126
FaiI	YATR	4 cut(s)	90, 222, 224, 226
FbaI	TGATCA	1 cut(s)	202
HgaI	GACGC	1 cut(s)	83
HphI	GGTGA	1 cut(s)	59
Hpy188III	TCNNGA	1 cut(s)	206
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	112, 197
HpyCH4IV	ACGT	1 cut(s)	187
HpySE526I	ACGT	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	57, 202
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	187
MalI	GATC	2 cut(s)	59, 204
MboI	GATC	2 cut(s)	57, 202
MboII	GAAGA	2 cut(s)	62, 227
MluCI	AATT	2 cut(s)	10, 78
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	2 cut(s)	113, 117
NdeII	GATC	2 cut(s)	57, 202
Ppu21I	YACGTR	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	57, 202
Sau96I	GGNCC	1 cut(s)	126
SetI	ASST	2 cut(s)	186, 190
SfaNI	GCATC	1 cut(s)	106
SgeI	CNNG	6 cut(s)	56, 83, 116, 121, 200, 218
SinI	GGWCC	1 cut(s)	126
Sse9I	AATT	2 cut(s)	10, 78
TaaI	ACNGT	2 cut(s)	112, 197
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	1 cut(s)	145
TasI	AATT	2 cut(s)	10, 78
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.