Rorug05G0333600

peroxisome matrix targeting signal-2 binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003191
Physical Location & Seq
Reverse (-)
40309292 .. 40309603
312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0333600.1

Sequence Viewer

Length: 312 bp
ATGCAGACTGAGGGAATAAAAGCAGATAGGGTGACCATGGTGGAGGTGTTCAAGAACATGGCAATAAAAGATGTTTCTGCTTGGACAGCAGCCATTGGAGCAATGGCCATGGAAGGAAATGAGGAGCGAGCTCTAGAGCTTTTTGATGTCATGCTTAAGCAAGCGGTGAAACCAGATGAAGTAGTCTTTGTGGCAGTACTAACAGTGTGTAGCCATGTTGGTCTTCCAGGAACAAGGGCGGAACGTTTTCATGTCAACGCAGTCGGTCTATGTTATTTCCCCTCATATCATTCATTGCGGTTGCATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000268 GO:0001501 GO:0001503 GO:0001764 GO:0001958 GO:0003674 GO:0005048 GO:0005053 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005782 GO:0005829 GO:0006082 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006662 GO:0006810 GO:0006886 GO:0006928 GO:0006996 GO:0007031 GO:0007275 GO:0007399 GO:0008104 GO:0008150 GO:0008152 GO:0008610 GO:0008611 GO:0009056 GO:0009058 GO:0009062 GO:0009653 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016020 GO:0016042 GO:0016043 GO:0016054 GO:0016477 GO:0016558 GO:0016560 GO:0017038 GO:0018904 GO:0019395 GO:0019752 GO:0019899 GO:0022008 GO:0030154 GO:0030258 GO:0031090 GO:0031461 GO:0031903 GO:0031907 GO:0031974 GO:0032501 GO:0032502 GO:0032787 GO:0032991 GO:0033036 GO:0033218 GO:0033365 GO:0034440 GO:0034613 GO:0036075 GO:0040011 GO:0042277 GO:0042579 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046485 GO:0046504 GO:0046907 GO:0046983 GO:0048513 GO:0048699 GO:0048705 GO:0048731 GO:0048856 GO:0048869 GO:0048870 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051674 GO:0055085 GO:0055114 GO:0060348 GO:0060349 GO:0060350 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:0097384 GO:0098588 GO:0098805 GO:1901503 GO:1901575 GO:1901576 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko04146 map04146
Pfam Domains
Protein Families
WD40

Protein Analysis

103

Amino Acids

11.35

Weight (kDa)

6.04

Isoelectric Point (pI)

13.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 23 - 71 5e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 164, 239, 298
AclI AACGTT 1 cut(s) 244
AcoI YGGCCR 1 cut(s) 105
AfaI GTAC 1 cut(s) 198
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 226
AluBI AGCT 2 cut(s) 131, 139
AluI AGCT 2 cut(s) 131, 139
Alw21I GWGCWC 1 cut(s) 133
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 89
Asp700I GAANNNNTTC 1 cut(s) 246
AsuHPI GGTGA 2 cut(s) 43, 178
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 133
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 228
BfaI CTAG 1 cut(s) 134
BfrI CTTAAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BmcAI AGTACT 1 cut(s) 198
Bme1390I CCNGG 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 36, 108
Bse3DI GCAATG 2 cut(s) 108, 293
BseBI CCWGG 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 36, 108
BseMI GCAATG 2 cut(s) 108, 293
BseRI GAGGAG 1 cut(s) 137
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 107
BsiHKAI GWGCWC 1 cut(s) 133
BsnI GGCC 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 133
Bsp19I CCATGG 2 cut(s) 36, 108
BspACI CCGC 3 cut(s) 164, 239, 298
BspANI GGCC 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 108, 293
BssECI CCNNGG 2 cut(s) 36, 108
BssT1I CCWWGG 2 cut(s) 36, 108
Bst2UI CCWGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 205
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 129, 162
BstDEI CTNAG 1 cut(s) 9
BstDSI CCRYGG 2 cut(s) 36, 108
BstEII GGTNACC 1 cut(s) 31
BstMWI GCNNNNNNNGC 2 cut(s) 86, 98
BstNI CCWGG 1 cut(s) 228
BstPI GGTNACC 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 226
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 2 cut(s) 36, 108
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 129, 162
Csp6I GTAC 1 cut(s) 197
CviAII CATG 7 cut(s) 37, 58, 109, 151, 215, 251, 305
CviJI RGCY 5 cut(s) 92, 107, 131, 139, 213
CviKI_1 RGCY 5 cut(s) 92, 107, 131, 139, 213
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 1 cut(s) 9
EaeI YGGCCR 1 cut(s) 105
EciI GGCGGA 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 131
Eco130I CCWWGG 2 cut(s) 36, 108
Eco24I GRGCYC 1 cut(s) 133
Eco53kI GAGCTC 1 cut(s) 131
Eco91I GGTNACC 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 131
EcoO65I GGTNACC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 226
EcoT14I CCWWGG 2 cut(s) 36, 108
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 2 cut(s) 36, 108
FaeI CATG 7 cut(s) 40, 61, 112, 154, 218, 254, 308
FaiI YATR 9 cut(s) 38, 59, 110, 152, 216, 252, 271, 286, 306
FatI CATG 7 cut(s) 36, 57, 108, 150, 214, 250, 304
Fnu4HI GCNGC 1 cut(s) 90
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 90
FspBI CTAG 1 cut(s) 134
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 107
Hin1II CATG 7 cut(s) 40, 61, 112, 154, 218, 254, 308
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HphI GGTGA 2 cut(s) 43, 178
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 52, 134
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 2 cut(s) 4, 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 98
HpyF3I CTNAG 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 7 cut(s) 40, 61, 112, 154, 218, 254, 308
LmnI GCTCC 2 cut(s) 98, 124
LpnPI CCDG 3 cut(s) 186, 213, 240
Lsp1109I GCAGC 1 cut(s) 101
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 31
MboII GAAGA 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 133
MlsI TGGCCA 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 107
MnlI CCTC 4 cut(s) 4, 37, 115, 292
Mox20I TGGCCA 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 246
MscI TGGCCA 1 cut(s) 107
MseI TTAA 1 cut(s) 156
Msp20I TGGCCA 1 cut(s) 107
MspCI CTTAAG 1 cut(s) 155
MspR9I CCNGG 1 cut(s) 228
MvaI CCWGG 1 cut(s) 228
MwoI GCNNNNNNNGC 2 cut(s) 86, 98
NcoI CCATGG 2 cut(s) 36, 108
NlaIII CATG 7 cut(s) 40, 61, 112, 154, 218, 254, 308
NmuCI GTSAC 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 246
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 1 cut(s) 91
Psp124BI GAGCTC 1 cut(s) 133
Psp1406I AACGTT 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 31
PspGI CCWGG 1 cut(s) 226
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 90
ScaI AGTACT 1 cut(s) 198
ScrFI CCNGG 1 cut(s) 228
SduI GDGCHC 1 cut(s) 133
SetI ASST 4 cut(s) 48, 133, 141, 247
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SsiI CCGC 3 cut(s) 164, 239, 298
SspMI CTAG 1 cut(s) 134
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 1 cut(s) 226
StyI CCWWGG 2 cut(s) 36, 108
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 1 cut(s) 247
TaqII GACCGA 1 cut(s) 254
TatI WGTACW 1 cut(s) 196
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 192, 239, 282
TspRI CASTG 1 cut(s) 210
Vha464I CTTAAG 1 cut(s) 155
XbaI TCTAGA 1 cut(s) 133
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XmnI GAANNNNTTC 1 cut(s) 246
XspI CTAG 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.