Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003191

Physical Location & Seq

Genomic Coordinates Reverse (-)

65473303 .. 65475039

Gene Structure 1737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00046320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1518 bp

ATGCTTCGCAAAAGAGCAACTACTCAAACATATTCAAGACCGCACCTTTCAAAGAAATCAAGGAAAGAAGAAGAAGACATGATCACCGAATTACCAGAAGACGTTCGCCGCCACATTCTCTCGTTCTTGTCAACTAAACACGCCGTGTCCACTACCATCCTTTCAAGAAGTTGGAAAAACCTATGGACCTTGGCTTCAACCAAAAACCTAGAGCTTGACGACAGCCTACTCCTCCATCCCGAAAGTAATTCCGAAACCATTCACCACCTTCCTTCTTTATTCTCTGATTTCGTGAACCATGTTCTCGGCCTCATCAGTGTGCCATGTATTCAAACACTCAAACTCTGTTGCTCCTACCCTTATGACCCAGATCACATAAATTGTTGGTTACATACGGCATGCAAATACAATGTAAGTGAGGTTAATATCAGAGTATACAGTCAAAACCCTATCAAATTGCCTTCGAATTTGTATGGTAGTACTTGGCTGGTGGTACTGAAATTAAACGCGAATGTAAGTCTCGACTTTCGGGACTCCGTCTCTTTTCCAAGACTCAAGGTGCTTTGGATAAAGGTTTATGACGCAAACGATGTTAACTTGACGCAGAAGCTTTTCAGAGATCACATCTGCCCTATTCTTGAAGAGTTGTTCATAGAGGGTGAAATATTGGATGAGAATAGCAGAGTGGTTTTGTTGGTGATATTGAGTTCACTTAAGAGGTTGAAAATTGAATACCGTTTGGCACATAGTTTTCAGGGTGGTATTGACTACAATTTTGTGTTGCATTGCCCTAACCTTGAGTGCCTTGATCTCCGTGATGACTTCTTGGCCAAGTATAGTGCTAGGGATTTGAAAGTTCTTGACTATGCAAAGATTAGTATTGGATACCCCTGTGCAGATTATGCGGCATTTGATCTTTATGGCGATGTAAATCCCTCTAATCGTGCGTTTGAGGTCCTCGAAGAACTCTCGAATGTCAAGTCTCTATCATTATCTGGTGGTACTACAAAGGCTCTCAGTTGTTCATATGAGACTGCACAACATACCGGTTTAGATGATGACGATGAAGATGCATTACTCATCCGCTTGAGAAATTTTGAGCTGTATTTTAGATTTTTGACCTTTTTGGAGCTGGGTTTCCGTACCTGTGAGAGCTGGAGTTTGTTGCCCTTATTACTGCATAGCTCGCCTAATGTGGAGTACCTTATCTTAAAGAAGGAATTGGATTTAACTAGTTGTCGTTACAAAACAGTATTCTTCTGGAGACCGGAAGGACCTGTTCCGGAATGCATGTCTCTTCATCTCAGAGAAATCGAGATCAGGGGATTTCAGGGGGAATCGCAGGAGTTGGCAATTGTAGAGTTTTTTTTGGGGCATGCAGAAGTGTTGCAAAAGATGACTATTCATGTCCAAGAAGCATCACCAAACATGATGTTTTCCGAGCATGTGTTACAAATCCCCACAGTTGCAGAAGCATGTGAGGTGGAGATAATATCAACAAAAAGTTGCATACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

505

Amino Acids

58.01

Weight (kDa)

5.6

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	28 - 63	4.7e-07	F-box domain
FBD	PF08387	425 - 468	4.6e-13	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19070
fragaria_vesca	FvH4_3g18163 FvH4_3g20090
malus_domestica	MD00G1185900.v1.1 MD03G1225700.v1.1 MD03G1253900.v1.1
prunus_persica	Prupe.4G183700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345041 RchiOBHm_Chr3g0460671 RchiOBHm_Chr4g0417371 RchiOBHm_Chr5g0030621 RchiOBHm_Chr5g0033891 RchiOBHm_Chr6g0283051 RchiOBHm_Chr7g0197871 RchiOBHm_Chr7g0237061 RchiOBHm_Chr7g0237081
rosa_laevigata	RLG00000033508
rosa_multiflora	Rmu_co8513519.1_g000001 Rmu_sc0001150.1_g000016 Rmu_sc0008328.1_g000003 Rmu_sc0022678.1_g000006
rosa_roxburghii	Rroxscaffold_1G00046320 Rroxscaffold_4G00317750
rosa_rugosa	Rorug03G0129400.1 Rorug05G0143000 Rorug05G0333600 Rorug05G0333700 Rorug05G0333800
rosa_samantha	Rh5AG211200 Rh5AG233900 Rh5BG234500 Rh5CG264800 Rh5DG198300 Rh5DG241400 Rh6BG371200 Rh7AG457800
rosa_wichuraiana	Rw5G021540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	1 cut(s)	509
AccIII	TCCGGA	1 cut(s)	1282
AciI	CCGC	4 cut(s)	41, 109, 905, 1084
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	2 cut(s)	466, 1093
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	5 cut(s)	481, 495, 1003, 1144, 1202
AflII	CTTAAG	1 cut(s)	713
AgeI	ACCGGT	1 cut(s)	1046
AgsI	TTSAA	9 cut(s)	36, 51, 165, 198, 332, 641, 724, 731, 853
AhlI	ACTAGT	1 cut(s)	1232
AluBI	AGCT	6 cut(s)	214, 610, 1102, 1132, 1155, 1185
AluI	AGCT	6 cut(s)	214, 610, 1102, 1132, 1155, 1185
Alw26I	GTCTC	6 cut(s)	524, 544, 987, 1025, 1258, 1299
Aor13HI	TCCGGA	1 cut(s)	1282
AoxI	GGCC	2 cut(s)	307, 828
ApoI	RAATTY	2 cut(s)	466, 1093
ArsI	GACNNNNNNTTYG	4 cut(s)	758, 790, 965, 997
AsiGI	ACCGGT	1 cut(s)	1046
Asp700I	GAANNNNTTC	3 cut(s)	102, 258, 611
AspS9I	GGNCC	3 cut(s)	186, 955, 1274
AsuHPI	GGTGA	5 cut(s)	76, 254, 671, 709, 1413
AsuII	TTCGAA	1 cut(s)	464
AvaII	GGWCC	3 cut(s)	186, 955, 1274
BaeI	ACNNNNGTAYC	2 cut(s)	877, 910
BalI	TGGCCA	1 cut(s)	830
BarI	GAAGNNNNNNTAC	2 cut(s)	1059, 1091
BbsI	GAAGAC	2 cut(s)	81, 105
BccI	CCATC	2 cut(s)	164, 243
BceAI	ACGGC	2 cut(s)	128, 411
BcgI	CGANNNNNNTGC	2 cut(s)	1052, 1086
BciVI	GTATCC	1 cut(s)	878
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	6 cut(s)	524, 544, 987, 1025, 1258, 1299
BcuI	ACTAGT	1 cut(s)	1232
BfaI	CTAG	3 cut(s)	209, 843, 1233
BfrI	CTTAAG	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	878
BisI	GCNGC	2 cut(s)	109, 906
BlsI	GCNGC	2 cut(s)	110, 907
BmcAI	AGTACT	1 cut(s)	481
Bme18I	GGWCC	3 cut(s)	186, 955, 1274
BmgT120I	GGNCC	3 cut(s)	186, 955, 1274
BmsI	GCATC	2 cut(s)	1060, 1427
BpiI	GAAGAC	2 cut(s)	81, 105
BpmI	CTGGAG	2 cut(s)	1177, 1282
Bpu14I	TTCGAA	1 cut(s)	464
BpuEI	CTTGAG	3 cut(s)	539, 818, 1108
BsaBI	GATNNNNATC	1 cut(s)	930
BsaI	GGTCTC	1 cut(s)	1258
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	3 cut(s)	1046, 1267, 1282
Bse118I	RCCGGY	1 cut(s)	1046
Bse3DI	GCAATG	1 cut(s)	784
Bse8I	GATNNNNATC	1 cut(s)	930
BseAI	TCCGGA	1 cut(s)	1282
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	4 cut(s)	156, 235, 676, 1080
BseJI	GATNNNNATC	1 cut(s)	930
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	2 cut(s)	1030, 1318
BseRI	GAGGAG	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	1132
BsgI	GTGCAG	2 cut(s)	915, 1020
Bsh1236I	CGCG	1 cut(s)	509
BshFI	GGCC	2 cut(s)	309, 830
BshTI	ACCGGT	1 cut(s)	1046
BsiSI	CCGG	3 cut(s)	1047, 1268, 1283
BslFI	GGGAC	1 cut(s)	545
BsmAI	GTCTC	6 cut(s)	524, 544, 987, 1025, 1258, 1299
BsmBI	CGTCTC	1 cut(s)	544
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	1292
BsnI	GGCC	2 cut(s)	309, 830
Bso31I	GGTCTC	1 cut(s)	1258
Bsp119I	TTCGAA	1 cut(s)	464
Bsp13I	TCCGGA	1 cut(s)	1282
Bsp143I	GATC	6 cut(s)	81, 370, 619, 808, 913, 1317
BspACI	CCGC	4 cut(s)	41, 109, 905, 1084
BspANI	GGCC	2 cut(s)	309, 830
BspCNI	CTCAG	2 cut(s)	1029, 1317
BspEI	TCCGGA	1 cut(s)	1282
BspFNI	CGCG	1 cut(s)	509
BspT104I	TTCGAA	1 cut(s)	464
BspTI	CTTAAG	1 cut(s)	713
BspTNI	GGTCTC	1 cut(s)	1258
BsrDI	GCAATG	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	1046
BssAI	RCCGGY	1 cut(s)	1046
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	6 cut(s)	81, 370, 619, 808, 913, 1317
BssNAI	GTATAC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	189
Bst1107I	GTATAC	1 cut(s)	436
Bst4CI	ACNGT	4 cut(s)	440, 737, 1252, 1465
Bst6I	CTCTTC	2 cut(s)	636, 1302
BstAFI	CTTAAG	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	3 cut(s)	400, 1187, 1377
BstDEI	CTNAG	2 cut(s)	1016, 1304
BstF5I	GGATG	4 cut(s)	156, 235, 676, 1080
BstFNI	CGCG	1 cut(s)	509
BstKTI	GATC	6 cut(s)	84, 373, 622, 811, 916, 1320
BstMAI	GTCTC	6 cut(s)	524, 544, 987, 1025, 1258, 1299
BstMBI	GATC	6 cut(s)	81, 370, 619, 808, 913, 1317
BstMWI	GCNNNNNNNGC	2 cut(s)	902, 1186
BstNSI	RCATGY	5 cut(s)	402, 1294, 1379, 1448, 1479
BstUI	CGCG	1 cut(s)	509
BstV2I	GAAGAC	2 cut(s)	81, 105
BstZ17I	GTATAC	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	2 cut(s)	309, 830
BtgZI	GCGATG	1 cut(s)	939
BtsCI	GGATG	4 cut(s)	156, 235, 676, 1080
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	3 cut(s)	400, 1187, 1377
Cfr10I	RCCGGY	1 cut(s)	1046
Cfr13I	GGNCC	3 cut(s)	186, 955, 1274
CseI	GACGC	2 cut(s)	590, 610
Csp6I	GTAC	5 cut(s)	480, 494, 1002, 1143, 1201
CspAI	ACCGGT	1 cut(s)	1046
CviQI	GTAC	5 cut(s)	480, 494, 1002, 1143, 1201
DdeI	CTNAG	2 cut(s)	1016, 1304
DpnI	GATC	6 cut(s)	83, 372, 621, 810, 915, 1319
DpnII	GATC	6 cut(s)	81, 370, 619, 808, 913, 1317
DraIII	CACNNNGTG	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	2 cut(s)	636, 1302
EarI	CTCTTC	2 cut(s)	636, 1302
Eco130I	CCWWGG	1 cut(s)	189
Eco31I	GGTCTC	1 cut(s)	1258
Eco47I	GGWCC	3 cut(s)	186, 955, 1274
EcoO109I	RGGNCCY	2 cut(s)	955, 1274
EcoT14I	CCWWGG	1 cut(s)	189
EcoT22I	ATGCAT	2 cut(s)	1075, 1292
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	544
FaqI	GGGAC	1 cut(s)	545
FauNDI	CATATG	1 cut(s)	1027
FbaI	TGATCA	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	109, 906
FokI	GGATG	4 cut(s)	143, 222, 683, 1067
Fsp4HI	GCNGC	2 cut(s)	109, 906
FspBI	CTAG	3 cut(s)	209, 843, 1233
GluI	GCNGC	2 cut(s)	109, 906
GsaI	CCCAGC	1 cut(s)	1136
GsuI	CTGGAG	2 cut(s)	1177, 1282
HaeIII	GGCC	2 cut(s)	309, 830
HapII	CCGG	3 cut(s)	1047, 1268, 1283
HgaI	GACGC	2 cut(s)	590, 610
HincII	GTYRAC	2 cut(s)	132, 595
HindII	GTYRAC	2 cut(s)	132, 595
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	3 cut(s)	533, 552, 1337
HpaI	GTTAAC	1 cut(s)	595
HpaII	CCGG	3 cut(s)	1047, 1268, 1283
HphI	GGTGA	5 cut(s)	76, 254, 671, 709, 1413
Hpy166II	GTNNAC	6 cut(s)	132, 150, 295, 436, 595, 710
Hpy188I	TCNGA	6 cut(s)	253, 286, 431, 617, 1307, 1441
Hpy8I	GTNNAC	6 cut(s)	132, 150, 295, 436, 595, 710
HpyAV	CCTTC	5 cut(s)	278, 282, 471, 1210, 1265
HpyCH4III	ACNGT	4 cut(s)	440, 737, 1252, 1465
HpyCH4IV	ACGT	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	2 cut(s)	902, 1186
HpyF3I	CTNAG	2 cut(s)	1016, 1304
HpySE526I	ACGT	1 cut(s)	102
Kpn2I	TCCGGA	1 cut(s)	1282
Ksp22I	TGATCA	1 cut(s)	81
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	6 cut(s)	81, 370, 619, 808, 913, 1317
LmnI	GCTCC	2 cut(s)	356, 1129
LweI	GCATC	2 cut(s)	1060, 1427
MaeI	CTAG	3 cut(s)	209, 843, 1233
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	3 cut(s)	387, 1241, 1449
MalI	GATC	6 cut(s)	83, 372, 621, 810, 915, 1319
MboI	GATC	6 cut(s)	81, 370, 619, 808, 913, 1317
MboII	GAAGA	9 cut(s)	80, 83, 86, 110, 653, 974, 1079, 1249, 1289
MfeI	CAATTG	1 cut(s)	1353
MlsI	TGGCCA	1 cut(s)	830
MluNI	TGGCCA	1 cut(s)	830
MlyI	GAGTC	2 cut(s)	527, 546
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	9 cut(s)	242, 320, 412, 649, 711, 946, 946, 968, 1474
Mox20I	TGGCCA	1 cut(s)	830
Mph1103I	ATGCAT	2 cut(s)	1075, 1292
MroI	TCCGGA	1 cut(s)	1282
MroXI	GAANNNNTTC	3 cut(s)	102, 258, 611
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	6 cut(s)	423, 503, 594, 714, 1211, 1229
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	830
MspCI	CTTAAG	1 cut(s)	713
MspI	CCGG	3 cut(s)	1047, 1268, 1283
MunI	CAATTG	1 cut(s)	1353
Mva1269I	GAATGC	1 cut(s)	1292
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	2 cut(s)	902, 1186
NdeI	CATATG	1 cut(s)	1027
NdeII	GATC	6 cut(s)	81, 370, 619, 808, 913, 1317
NmeAIII	GCCGAG	1 cut(s)	285
NsiI	ATGCAT	2 cut(s)	1075, 1292
NspI	RCATGY	5 cut(s)	402, 1294, 1379, 1448, 1479
NspV	TTCGAA	1 cut(s)	464
PaeI	GCATGC	2 cut(s)	402, 1379
PctI	GAATGC	1 cut(s)	1292
PdmI	GAANNNNTTC	3 cut(s)	102, 258, 611
PfeI	GAWTC	1 cut(s)	1337
PflFI	GACNNNGTC	1 cut(s)	536
PinAI	ACCGGT	1 cut(s)	1046
PkrI	GCNGC	2 cut(s)	110, 907
PleI	GAGTC	2 cut(s)	527, 546
PpsI	GAGTC	2 cut(s)	527, 546
PpuMI	RGGWCCY	2 cut(s)	955, 1274
Psp5II	RGGWCCY	2 cut(s)	955, 1274
PspFI	CCCAGC	1 cut(s)	1132
PspPI	GGNCC	3 cut(s)	186, 955, 1274
PspPPI	RGGWCCY	2 cut(s)	955, 1274
PsyI	GACNNNGTC	1 cut(s)	536
RsaI	GTAC	5 cut(s)	481, 495, 1003, 1144, 1202
RsaNI	GTAC	5 cut(s)	480, 494, 1002, 1143, 1201
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	6 cut(s)	423, 503, 594, 714, 1211, 1229
SatI	GCNGC	2 cut(s)	109, 906
Sau3AI	GATC	6 cut(s)	81, 370, 619, 808, 913, 1317
Sau96I	GGNCC	3 cut(s)	186, 955, 1274
ScaI	AGTACT	1 cut(s)	481
SchI	GAGTC	2 cut(s)	527, 546
SfaNI	GCATC	2 cut(s)	1060, 1427
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	3 cut(s)	186, 955, 1274
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	4 cut(s)	554, 713, 797, 1087
SmoI	CTYRAG	4 cut(s)	554, 713, 797, 1087
SpeI	ACTAGT	1 cut(s)	1232
SphI	GCATGC	2 cut(s)	402, 1379
SsiI	CCGC	4 cut(s)	41, 109, 905, 1084
SspI	AATATT	1 cut(s)	666
SspMI	CTAG	3 cut(s)	209, 843, 1233
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	4 cut(s)	440, 737, 1252, 1465
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	5 cut(s)	464, 522, 960, 971, 1314
TatI	WGTACW	1 cut(s)	479
TauI	GCSGC	2 cut(s)	111, 908
TfiI	GAWTC	1 cut(s)	1337
Tru1I	TTAA	6 cut(s)	423, 503, 594, 714, 1211, 1229
Tru9I	TTAA	6 cut(s)	423, 503, 594, 714, 1211, 1229
TscAI	CASTG	1 cut(s)	322
TspDTI	ATGAA	5 cut(s)	640, 1014, 1080, 1289, 1394
TspGWI	ACGGA	3 cut(s)	526, 803, 1130
TspRI	CASTG	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	536
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	3 cut(s)	186, 955, 1274
XapI	RAATTY	2 cut(s)	466, 1093
XceI	RCATGY	5 cut(s)	402, 1294, 1379, 1448, 1479
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	3 cut(s)	102, 258, 611
XspI	CTAG	3 cut(s)	209, 843, 1233
ZrmI	AGTACT	1 cut(s)	481
Zsp2I	ATGCAT	2 cut(s)	1075, 1292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.