Rorug05G0143000

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003191
Physical Location & Seq
Reverse (-)
13162964 .. 13163347
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0143000.1

Sequence Viewer

Length: 384 bp
ATGAGGATATACGAGGTGGTGATGGAGGAGATAACAGGGTACACGGGGCTATCACCGGCGGCATTTTTCACAATCGCTAGGATGATGGTCATCGTTTACAGATATGTTACCACAATGTTTATGGCACTCGAAGATTACAACAATCCTCCGGTGGTCAGTGGTGCTAATTCAGAATTGGTGAACAAGTATTTCAATCCCAAGATCGCCACGACGCCAAGCTCAATCCAAGTCGAGGATATGACGGAGCAAGAGCTTAGAGGATATGATGGGTCTGACCCCAATAAGCCCCTTCTTATGGCCATCAAAGCTCAGATCTACGACGTGTTTACATGCTCTGTTTACATTTTGGGGCACAACCAAAGAACCTTACTGGAAAAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

127

Amino Acids

14.48

Weight (kDa)

5.09

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 212
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 2 cut(s) 232, 295
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 1 cut(s) 193
AjiI CACGTC 1 cut(s) 322
AluBI AGCT 3 cut(s) 219, 253, 308
AluI AGCT 3 cut(s) 219, 253, 308
AoxI GGCC 1 cut(s) 297
AsuHPI GGTGA 3 cut(s) 31, 45, 190
BaeGI GKGCMC 1 cut(s) 354
BalI TGGCCA 1 cut(s) 299
BccI CCATC 4 cut(s) 16, 79, 260, 308
BfaI CTAG 1 cut(s) 78
BglII AGATCT 1 cut(s) 312
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 322
BsaBI GATNNNNATC 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 2 cut(s) 232, 295
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 375
Bse8I GATNNNNATC 1 cut(s) 89
BseGI GGATG 1 cut(s) 87
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 232, 295
BseMII CTCAG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 375
BseRI GAGGAG 1 cut(s) 41
BseSI GKGCMC 1 cut(s) 354
BshFI GGCC 1 cut(s) 299
BsiSI CCGG 2 cut(s) 56, 149
BslI CCNNNNNNNGG 2 cut(s) 232, 295
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 2 cut(s) 201, 312
BspACI CCGC 1 cut(s) 59
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 375
BssAI RCCGGY 1 cut(s) 55
BssMI GATC 2 cut(s) 201, 312
BssNI GRCGYC 1 cut(s) 212
BstACI GRCGYC 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 254, 309
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 2 cut(s) 204, 315
BstMBI GATC 2 cut(s) 201, 312
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 1 cut(s) 299
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 163
Cfr10I RCCGGY 1 cut(s) 55
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 330
CviJI RGCY 6 cut(s) 49, 219, 253, 286, 299, 308
CviKI_1 RGCY 6 cut(s) 49, 219, 253, 286, 299, 308
CviQI GTAC 1 cut(s) 40
DdeI CTNAG 2 cut(s) 254, 309
DpnI GATC 2 cut(s) 203, 314
DpnII GATC 2 cut(s) 201, 312
EaeI YGGCCR 1 cut(s) 297
FaeI CATG 1 cut(s) 333
FaiI YATR 7 cut(s) 10, 105, 122, 239, 264, 296, 331
FatI CATG 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 60
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 299
HapII CCGG 2 cut(s) 56, 149
HgaI GACGC 1 cut(s) 220
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 1 cut(s) 333
HpaII CCGG 2 cut(s) 56, 149
HphI GGTGA 3 cut(s) 31, 45, 190
Hpy166II GTNNAC 5 cut(s) 42, 97, 181, 327, 340
Hpy188I TCNGA 3 cut(s) 172, 274, 312
Hpy8I GTNNAC 5 cut(s) 42, 97, 181, 327, 340
Hpy99I CGWCG 2 cut(s) 214, 323
HpyAV CCTTC 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 254, 309
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 333
Kzo9I GATC 2 cut(s) 201, 312
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 4 cut(s) 21, 69, 162, 356
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 203, 314
MboI GATC 2 cut(s) 201, 312
MboII GAAGA 1 cut(s) 143
MflI RGATCY 1 cut(s) 312
MhlI GDGCHC 1 cut(s) 354
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 2 cut(s) 166, 173
MluNI TGGCCA 1 cut(s) 299
MnlI CCTC 6 cut(s) 7, 19, 156, 226, 251, 372
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 2 cut(s) 56, 149
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 2 cut(s) 201, 312
NlaIII CATG 1 cut(s) 333
NspI RCATGY 1 cut(s) 333
PkrI GCNGC 1 cut(s) 61
PsuI RGATCY 1 cut(s) 312
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 201, 312
SduI GDGCHC 1 cut(s) 354
SetI ASST 7 cut(s) 18, 221, 255, 310, 324, 368, 383
SgrAI CRCCGGYG 1 cut(s) 55
Sse9I AATT 2 cut(s) 166, 173
SsiI CCGC 1 cut(s) 59
SspMI CTAG 1 cut(s) 78
TaiI ACGT 1 cut(s) 324
TaqI TCGA 2 cut(s) 129, 231
TasI AATT 2 cut(s) 166, 173
TauI GCSGC 1 cut(s) 62
TscAI CASTG 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 163
XceI RCATGY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.