Rh5AG233900

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003191
Physical Location & Seq
Forward (+)
28355149 .. 28356888
1740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG233900.1

Sequence Viewer

Length: 1521 bp
ATGATGCTTCGCAAAAGAGCAACTACTCAAACATATTCAAGACCGCACCTTTCAAAGAAATCAAGGAAAGAAGAAGAAGACATGATCACCGAATTACCAGAAGACGTTCGCCGCCACATTCTCTCGTTCTTGTCAACTAAACACGCCGTGTCCACTACCATCCTTTCAAGAAGTTGGAAAAACCTATGGACCTTGGCTTCAACCAAAAACCTAGAGCTTGACGACAGCCTACTCCTCCATCCCGAAAGTAATTCCGAAACCATTCACCACCTTCCTTCTTTATTCTCTAATTTCGTGAACCATGTTCTCGGCCTCATCAGTGTGCCATGTATTCAAACACTCAAACTCTGTTGCTCCTACCCTTATGACCCAGATCACATAAATTGTTGGTTACATACGGCATGCAAATACAATGTCAGTGAGGTTAATATCAGAGTATACAGTCAAAACCCTATCAAATTGCCTTCGAATTTGTATGGTAGTACTTGGCTGGTGGTACTGAAATTAAACGCGAATGTAAGTCTCGACTTTCGGGACTCCATCTCTTTTCCAAGACTCAAGGTGCTTTGGATAAAGGTTTATGACGCAAACGATGTTAACTTGACGCAGAAGCTTTTCAGAGATCACATCTGCCCTATTCTTGAAGAGTTGTTCATAGAGGGTGAAATATTAGATGAGAATAGAAGAGTGGTTTTGTTGGTGATATTGAGTTCACTTAAGAGGTTGAAAATTGAATACCGTTTGGCACATAGTTTTCAGGGTGGTATTGAGTACAATTTTGTGTTGCATTGCCCTAACCTTGAGTGCCTTGATCTCCGTGATGACTTCTTGGCCAAGTATAGTGCTAGGGATTTGAAAGTTCTTGACTATGCAAAGATTAGTATTGGATACCCCTGTGCAGATTATGCAGCATTTGATCTTTATGGCGATGTAAATCCCTCTAATCGTGCGTTTGAGGTCCTCGAAGAACTCTCGAATGTCAAGTCTCTATCATTATCTGGTGGTACTACAAAGGCTCTCAGTTGTTCATATGAGACTGCACAACATACCGGTTTAGATGATGACGATGAAAATGCATTACTCATCCGCTTGAGAAATTTTGAGCTGTATTTTAGATTTTTGACCTTTTTGGAGCTGGGTTTCCGTACCTGTGAGAGCTGGAGTTTATTGCCCTTATTACTGCATAGCTCGCCTAATGTGGAGTACCTTATCTTAAAGAAGGAATTGGATTTAACTAGTTGTCGTTACAAAACAGTATTCTTCTGGAGACCGGAAGAACCTGTTCCGGAATGCATGTCTCTTCATCTCAGAGAAATCGAGATCAGGGGATTTCAGGGGGAATCGCAGGAGTTGGCAATTGTAGAGTTTTTTTTGGGGCATGCAGAAGTGTTGCAAAAGATGACTATTCATGTCCAAGAAGCATCACCAAATATGATGTTTTCCGAGCATGTATTACAAATCCCCACAGTTGCAGAAGCATGTGAAGTGGAGATAATATCAACAAAAAGTTGCATACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

506

Amino Acids

58.31

Weight (kDa)

5.73

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 29 - 64 4.8e-07 F-box domain
FBD PF08387 426 - 469 3.2e-13 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 438
AccII CGCG 1 cut(s) 512
AccIII TCCGGA 1 cut(s) 1285
AciI CCGC 3 cut(s) 44, 112, 1087
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 2 cut(s) 469, 1096
AdeI CACNNNGTG 1 cut(s) 148
AfaI GTAC 6 cut(s) 484, 498, 773, 1006, 1147, 1205
AflII CTTAAG 1 cut(s) 716
AgeI ACCGGT 1 cut(s) 1049
AgsI TTSAA 9 cut(s) 39, 54, 168, 201, 335, 644, 727, 734, 856
AhlI ACTAGT 1 cut(s) 1235
AluBI AGCT 6 cut(s) 217, 613, 1105, 1135, 1158, 1188
AluI AGCT 6 cut(s) 217, 613, 1105, 1135, 1158, 1188
Alw26I GTCTC 5 cut(s) 527, 990, 1028, 1261, 1302
Aor13HI TCCGGA 1 cut(s) 1285
AoxI GGCC 2 cut(s) 310, 831
ApeKI GCWGC 1 cut(s) 908
ApoI RAATTY 2 cut(s) 469, 1096
ArsI GACNNNNNNTTYG 4 cut(s) 399, 431, 968, 1000
AsiGI ACCGGT 1 cut(s) 1049
Asp700I GAANNNNTTC 4 cut(s) 105, 261, 614, 1281
AspS9I GGNCC 2 cut(s) 189, 958
AsuHPI GGTGA 5 cut(s) 79, 257, 674, 712, 1416
AsuII TTCGAA 1 cut(s) 467
AvaII GGWCC 2 cut(s) 189, 958
BaeI ACNNNNGTAYC 2 cut(s) 880, 913
BalI TGGCCA 1 cut(s) 833
BbsI GAAGAC 2 cut(s) 84, 108
BbvI GCAGC 1 cut(s) 920
BccI CCATC 3 cut(s) 167, 246, 548
BceAI ACGGC 2 cut(s) 131, 414
BcgI CGANNNNNNTGC 2 cut(s) 1055, 1089
BciVI GTATCC 1 cut(s) 881
BclI TGATCA 1 cut(s) 84
BcoDI GTCTC 5 cut(s) 527, 990, 1028, 1261, 1302
BcuI ACTAGT 1 cut(s) 1235
BfaI CTAG 3 cut(s) 212, 846, 1236
BfrI CTTAAG 1 cut(s) 716
BfuI GTATCC 1 cut(s) 881
BisI GCNGC 2 cut(s) 112, 909
BlsI GCNGC 2 cut(s) 113, 910
BmcAI AGTACT 1 cut(s) 484
Bme18I GGWCC 2 cut(s) 189, 958
BmgT120I GGNCC 2 cut(s) 189, 958
BmsI GCATC 1 cut(s) 1430
BpiI GAAGAC 2 cut(s) 84, 108
BpmI CTGGAG 2 cut(s) 1180, 1285
Bpu14I TTCGAA 1 cut(s) 467
BpuEI CTTGAG 3 cut(s) 542, 821, 1111
BsaBI GATNNNNATC 1 cut(s) 933
BsaI GGTCTC 1 cut(s) 1261
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 3 cut(s) 1049, 1270, 1285
Bse118I RCCGGY 1 cut(s) 1049
Bse3DI GCAATG 1 cut(s) 787
Bse8I GATNNNNATC 1 cut(s) 933
BseAI TCCGGA 1 cut(s) 1285
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 3 cut(s) 159, 238, 1083
BseJI GATNNNNATC 1 cut(s) 933
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 2 cut(s) 1033, 1321
BseRI GAGGAG 1 cut(s) 224
BseXI GCAGC 1 cut(s) 920
BseYI CCCAGC 1 cut(s) 1135
BsgI GTGCAG 2 cut(s) 918, 1023
Bsh1236I CGCG 1 cut(s) 512
BshFI GGCC 2 cut(s) 312, 833
BshTI ACCGGT 1 cut(s) 1049
BsiSI CCGG 3 cut(s) 1050, 1271, 1286
BslFI GGGAC 1 cut(s) 548
BsmAI GTCTC 5 cut(s) 527, 990, 1028, 1261, 1302
BsmFI GGGAC 1 cut(s) 548
BsmI GAATGC 1 cut(s) 1295
BsnI GGCC 2 cut(s) 312, 833
Bso31I GGTCTC 1 cut(s) 1261
Bsp119I TTCGAA 1 cut(s) 467
Bsp13I TCCGGA 1 cut(s) 1285
Bsp143I GATC 6 cut(s) 84, 373, 622, 811, 916, 1320
BspACI CCGC 3 cut(s) 44, 112, 1087
BspANI GGCC 2 cut(s) 312, 833
BspCNI CTCAG 2 cut(s) 1032, 1320
BspEI TCCGGA 1 cut(s) 1285
BspFNI CGCG 1 cut(s) 512
BspT104I TTCGAA 1 cut(s) 467
BspTI CTTAAG 1 cut(s) 716
BspTNI GGTCTC 1 cut(s) 1261
BsrDI GCAATG 1 cut(s) 787
BsrFI RCCGGY 1 cut(s) 1049
BssAI RCCGGY 1 cut(s) 1049
BssECI CCNNGG 1 cut(s) 192
BssMI GATC 6 cut(s) 84, 373, 622, 811, 916, 1320
BssNAI GTATAC 1 cut(s) 439
BssT1I CCWWGG 1 cut(s) 192
Bst1107I GTATAC 1 cut(s) 439
Bst4CI ACNGT 4 cut(s) 443, 740, 1255, 1468
Bst6I CTCTTC 3 cut(s) 639, 679, 1305
BstAFI CTTAAG 1 cut(s) 716
BstAPI GCANNNNNTGC 1 cut(s) 905
BstBI TTCGAA 1 cut(s) 467
BstC8I GCNNGC 3 cut(s) 403, 1190, 1380
BstDEI CTNAG 2 cut(s) 1019, 1307
BstF5I GGATG 3 cut(s) 159, 238, 1083
BstFNI CGCG 1 cut(s) 512
BstKTI GATC 6 cut(s) 87, 376, 625, 814, 919, 1323
BstMAI GTCTC 5 cut(s) 527, 990, 1028, 1261, 1302
BstMBI GATC 6 cut(s) 84, 373, 622, 811, 916, 1320
BstMWI GCNNNNNNNGC 2 cut(s) 905, 1189
BstNSI RCATGY 5 cut(s) 405, 1297, 1382, 1451, 1482
BstUI CGCG 1 cut(s) 512
BstV1I GCAGC 1 cut(s) 920
BstV2I GAAGAC 2 cut(s) 84, 108
BstZ17I GTATAC 1 cut(s) 439
BsuI GTATCC 1 cut(s) 881
BsuRI GGCC 2 cut(s) 312, 833
BtgZI GCGATG 1 cut(s) 942
BtsCI GGATG 3 cut(s) 159, 238, 1083
BtsIMutI CAGTG 2 cut(s) 325, 424
Cac8I GCNNGC 3 cut(s) 403, 1190, 1380
Cfr10I RCCGGY 1 cut(s) 1049
Cfr13I GGNCC 2 cut(s) 189, 958
CseI GACGC 2 cut(s) 593, 613
Csp6I GTAC 6 cut(s) 483, 497, 772, 1005, 1146, 1204
CspAI ACCGGT 1 cut(s) 1049
CviAII CATG 9 cut(s) 82, 302, 327, 402, 1294, 1379, 1409, 1448, 1479
CviQI GTAC 6 cut(s) 483, 497, 772, 1005, 1146, 1204
DdeI CTNAG 2 cut(s) 1019, 1307
DpnI GATC 6 cut(s) 86, 375, 624, 813, 918, 1322
DpnII GATC 6 cut(s) 84, 373, 622, 811, 916, 1320
DraIII CACNNNGTG 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 831
Eam1104I CTCTTC 3 cut(s) 639, 679, 1305
EarI CTCTTC 3 cut(s) 639, 679, 1305
Eco130I CCWWGG 1 cut(s) 192
Eco31I GGTCTC 1 cut(s) 1261
Eco47I GGWCC 2 cut(s) 189, 958
EcoO109I RGGNCCY 1 cut(s) 958
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 2 cut(s) 1078, 1295
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 9 cut(s) 85, 305, 330, 405, 1297, 1382, 1412, 1451, 1482
FaqI GGGAC 1 cut(s) 548
FatI CATG 9 cut(s) 81, 301, 326, 401, 1293, 1378, 1408, 1447, 1478
FauNDI CATATG 1 cut(s) 1030
FbaI TGATCA 1 cut(s) 84
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 112, 909
FokI GGATG 3 cut(s) 146, 225, 1070
Fsp4HI GCNGC 2 cut(s) 112, 909
FspBI CTAG 3 cut(s) 212, 846, 1236
GluI GCNGC 2 cut(s) 112, 909
GsaI CCCAGC 1 cut(s) 1139
GsuI CTGGAG 2 cut(s) 1180, 1285
HaeIII GGCC 2 cut(s) 312, 833
HapII CCGG 3 cut(s) 1050, 1271, 1286
HgaI GACGC 2 cut(s) 593, 613
Hin1II CATG 9 cut(s) 85, 305, 330, 405, 1297, 1382, 1412, 1451, 1482
HincII GTYRAC 2 cut(s) 135, 598
HindII GTYRAC 2 cut(s) 135, 598
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 3 cut(s) 536, 555, 1340
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 3 cut(s) 1050, 1271, 1286
HphI GGTGA 5 cut(s) 79, 257, 674, 712, 1416
Hpy166II GTNNAC 6 cut(s) 135, 153, 298, 439, 598, 713
Hpy188I TCNGA 5 cut(s) 256, 434, 620, 1310, 1444
Hpy8I GTNNAC 6 cut(s) 135, 153, 298, 439, 598, 713
HpyAV CCTTC 4 cut(s) 281, 285, 474, 1213
HpyCH4III ACNGT 4 cut(s) 443, 740, 1255, 1468
HpyCH4IV ACGT 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 2 cut(s) 905, 1189
HpyF3I CTNAG 2 cut(s) 1019, 1307
HpySE526I ACGT 1 cut(s) 105
Hsp92II CATG 9 cut(s) 85, 305, 330, 405, 1297, 1382, 1412, 1451, 1482
Kpn2I TCCGGA 1 cut(s) 1285
Ksp22I TGATCA 1 cut(s) 84
KspAI GTTAAC 1 cut(s) 598
Kzo9I GATC 6 cut(s) 84, 373, 622, 811, 916, 1320
LmnI GCTCC 2 cut(s) 359, 1132
Lsp1109I GCAGC 1 cut(s) 920
LweI GCATC 1 cut(s) 1430
MaeI CTAG 3 cut(s) 212, 846, 1236
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 390, 1244
MalI GATC 6 cut(s) 86, 375, 624, 813, 918, 1322
MboI GATC 6 cut(s) 84, 373, 622, 811, 916, 1320
MfeI CAATTG 1 cut(s) 1356
MlsI TGGCCA 1 cut(s) 833
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 2 cut(s) 530, 549
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 8 cut(s) 245, 323, 415, 652, 714, 949, 949, 971
Mox20I TGGCCA 1 cut(s) 833
Mph1103I ATGCAT 2 cut(s) 1078, 1295
MroI TCCGGA 1 cut(s) 1285
MroXI GAANNNNTTC 4 cut(s) 105, 261, 614, 1281
MscI TGGCCA 1 cut(s) 833
MseI TTAA 6 cut(s) 426, 506, 597, 717, 1214, 1232
MslI CAYNNNNRTG 1 cut(s) 320
Msp20I TGGCCA 1 cut(s) 833
MspCI CTTAAG 1 cut(s) 716
MspI CCGG 3 cut(s) 1050, 1271, 1286
MunI CAATTG 1 cut(s) 1356
Mva1269I GAATGC 1 cut(s) 1295
MvnI CGCG 1 cut(s) 512
MwoI GCNNNNNNNGC 2 cut(s) 905, 1189
NdeI CATATG 1 cut(s) 1030
NdeII GATC 6 cut(s) 84, 373, 622, 811, 916, 1320
NlaIII CATG 9 cut(s) 85, 305, 330, 405, 1297, 1382, 1412, 1451, 1482
NmeAIII GCCGAG 1 cut(s) 288
NsiI ATGCAT 2 cut(s) 1078, 1295
NspI RCATGY 5 cut(s) 405, 1297, 1382, 1451, 1482
NspV TTCGAA 1 cut(s) 467
PaeI GCATGC 2 cut(s) 405, 1382
PctI GAATGC 1 cut(s) 1295
PdmI GAANNNNTTC 4 cut(s) 105, 261, 614, 1281
PfeI GAWTC 1 cut(s) 1340
PinAI ACCGGT 1 cut(s) 1049
PkrI GCNGC 2 cut(s) 113, 910
PleI GAGTC 2 cut(s) 530, 549
PpsI GAGTC 2 cut(s) 530, 549
PpuMI RGGWCCY 1 cut(s) 958
Psp5II RGGWCCY 1 cut(s) 958
PspFI CCCAGC 1 cut(s) 1135
PspPI GGNCC 2 cut(s) 189, 958
PspPPI RGGWCCY 1 cut(s) 958
RsaI GTAC 6 cut(s) 484, 498, 773, 1006, 1147, 1205
RsaNI GTAC 6 cut(s) 483, 497, 772, 1005, 1146, 1204
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 6 cut(s) 426, 506, 597, 717, 1214, 1232
SatI GCNGC 2 cut(s) 112, 909
Sau3AI GATC 6 cut(s) 84, 373, 622, 811, 916, 1320
Sau96I GGNCC 2 cut(s) 189, 958
ScaI AGTACT 1 cut(s) 484
SchI GAGTC 2 cut(s) 530, 549
SfaNI GCATC 1 cut(s) 1430
SfuI TTCGAA 1 cut(s) 467
SinI GGWCC 2 cut(s) 189, 958
SmiMI CAYNNNNRTG 1 cut(s) 320
SmlI CTYRAG 4 cut(s) 557, 716, 800, 1090
SmoI CTYRAG 4 cut(s) 557, 716, 800, 1090
SpeI ACTAGT 1 cut(s) 1235
SphI GCATGC 2 cut(s) 405, 1382
SsiI CCGC 3 cut(s) 44, 112, 1087
SspI AATATT 1 cut(s) 669
SspMI CTAG 3 cut(s) 212, 846, 1236
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 4 cut(s) 443, 740, 1255, 1468
TaiI ACGT 1 cut(s) 108
TaqI TCGA 5 cut(s) 467, 525, 963, 974, 1317
TatI WGTACW 2 cut(s) 482, 771
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 1 cut(s) 1340
Tru1I TTAA 6 cut(s) 426, 506, 597, 717, 1214, 1232
Tru9I TTAA 6 cut(s) 426, 506, 597, 717, 1214, 1232
TscAI CASTG 2 cut(s) 325, 424
TseI GCWGC 1 cut(s) 908
TspDTI ATGAA 5 cut(s) 643, 1017, 1083, 1292, 1397
TspGWI ACGGA 2 cut(s) 806, 1133
TspRI CASTG 2 cut(s) 325, 424
Vha464I CTTAAG 1 cut(s) 716
VpaK11BI GGWCC 2 cut(s) 189, 958
XapI RAATTY 2 cut(s) 469, 1096
XceI RCATGY 5 cut(s) 405, 1297, 1382, 1451, 1482
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 4 cut(s) 105, 261, 614, 1281
XspI CTAG 3 cut(s) 212, 846, 1236
ZrmI AGTACT 1 cut(s) 484
Zsp2I ATGCAT 2 cut(s) 1078, 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.