RchiOBHm_Chr6g0283051

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0003191
Physical Location & Seq
Forward (+)
46285743 .. 46287763
2021 bp
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UTR
Exon/CDS
Intron
PRQ25377

Sequence Viewer

Length: 294 bp
ATGATTGATTTGGGAAAATGGAACCAAATCGAGCAGTTTTCTTCCAGTAGCTTCCATTTCTTCTTCCTCATCCTCCCTTTGTTCACTCAATTCAAACATGGCCGACTCTCCCAAACGGGTTTCAAATCAAAAATGCCTTCAAACTCAAAGCGTCTCAAATTATGCTCACACAATGAAGACAGGATCAATGGGTTCCCAGATGCAATTCTTTGCCACATTCTTTCTTTCTTTTCAATCAGACAGGCTGTAAAGACCAGCATTTTATCACATAAATGGAGGAATGTCTGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

97

Amino Acids

11.37

Weight (kDa)

10.23

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 64 - 96 1e-05 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 100
AgsI TTSAA 4 cut(s) 94, 124, 141, 234
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw26I GTCTC 1 cut(s) 158
AlwI GGATC 1 cut(s) 191
AoxI GGCC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 23, 194
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 1 cut(s) 183
Bse1I ACTGG 1 cut(s) 45
BseGI GGATG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 45
BshFI GGCC 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 158
BsmBI CGTCTC 1 cut(s) 158
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 183
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 23, 194
BspPI GGATC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 45
BssMI GATC 1 cut(s) 183
BstF5I GGATG 1 cut(s) 69
BstKTI GATC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 158
BstMBI GATC 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 69
CseI GACGC 1 cut(s) 140
CviAII CATG 1 cut(s) 98
CviJI RGCY 4 cut(s) 51, 102, 245, 290
CviKI_1 RGCY 4 cut(s) 51, 102, 245, 290
DpnI GATC 1 cut(s) 185
DpnII GATC 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 100
Esp3I CGTCTC 1 cut(s) 158
FaeI CATG 1 cut(s) 101
FaiI YATR 3 cut(s) 99, 163, 270
FatI CATG 1 cut(s) 97
FokI GGATG 1 cut(s) 56
HaeIII GGCC 1 cut(s) 102
HgaI GACGC 1 cut(s) 140
Hin1II CATG 1 cut(s) 101
HinfI GANTC 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 84
HpyAV CCTTC 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 203
Hsp92II CATG 1 cut(s) 101
Kzo9I GATC 1 cut(s) 183
LpnPI CCDG 6 cut(s) 58, 166, 210, 227, 268, 271
LweI GCATC 1 cut(s) 190
MalI GATC 1 cut(s) 185
MboI GATC 1 cut(s) 183
MboII GAAGA 4 cut(s) 33, 52, 55, 188
MluCI AATT 3 cut(s) 89, 158, 204
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 3 cut(s) 77, 83, 270
MslI CAYNNNNRTG 1 cut(s) 271
NdeII GATC 1 cut(s) 183
NlaIII CATG 1 cut(s) 101
NlaIV GGNNCC 2 cut(s) 23, 194
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PspN4I GGNNCC 2 cut(s) 23, 194
RseI CAYNNNNRTG 1 cut(s) 271
Sau3AI GATC 1 cut(s) 183
SchI GAGTC 1 cut(s) 99
SetI ASST 1 cut(s) 53
SfaNI GCATC 1 cut(s) 190
SgeI CNNG 8 cut(s) 43, 57, 110, 129, 193, 209, 254, 267
SmiMI CAYNNNNRTG 1 cut(s) 271
Sse9I AATT 3 cut(s) 89, 158, 204
TaqI TCGA 1 cut(s) 30
TasI AATT 3 cut(s) 89, 158, 204
TspDTI ATGAA 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.