Rw5G021540

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003191
Physical Location & Seq
Reverse (-)
28993656 .. 28996184
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021540.1

Sequence Viewer

Length: 627 bp
ATGATATGGAGATATATAATCAACTTCTCCAGGTTGAAAATTGAATACCGTTTGGCACATAGTTTTCAGGGTGGTATTGAGTACAATTTTGTGTTGCATTGCCCTAACCTTGAGTGCCTTGATCTCCGTGATGACTTCTTGGCCAAGTATAGTGCTAGGGATTTGAAAGTTCTTGACTATGCAAAGATTAGTATTGGATACCCCTGTGCAGATTATGCCGCATTTGATCTTTATGGCGATGTAAATCCCTCTAACCGTGCGTTTGAGGTCCTCGAAGAACTCTCGAATGTCAAGTCTCTATCATTATCTGGTGGTACTACAAAGGCTCTCAGTTGTTCATATGAGACTGCACAACATACCGGTTTAGATGATGACGATGAAGATGCATTACTCATCCGCTTGAGAAATTTTGAGCTAGAAATCGAGATCAGGGGATTTCAGGGGATATCGCAGGAGTTGGCAATTGTAGAGTTTTTTTTGGGGCATGCAGAAGTGTTGCAAAAGATGACCATTCATGTCCAAGAAGCATCACCAAACATAATGTTTTCCGAGCATGTGTTACAAATCCCCACGGTTGCAGAAGCATGTGAAGTGGAGATAATACCAACAAAAAGTTGCATACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

208

Amino Acids

23.59

Weight (kDa)

4.7

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 141 - 171 7.6e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 219, 397
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 406
AfaI GTAC 2 cut(s) 83, 316
AgeI ACCGGT 1 cut(s) 359
AgsI TTSAA 3 cut(s) 37, 44, 166
AjnI CCWGG 1 cut(s) 29
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
Alw26I GTCTC 2 cut(s) 300, 338
AoxI GGCC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 406
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AsiGI ACCGGT 1 cut(s) 359
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 522
AvaII GGWCC 1 cut(s) 268
BaeI ACNNNNGTAYC 2 cut(s) 190, 223
BalI TGGCCA 1 cut(s) 143
BarI GAAGNNNNNNTAC 2 cut(s) 372, 404
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BciT130I CCWGG 1 cut(s) 31
BciVI GTATCC 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 300, 338
BfaI CTAG 2 cut(s) 156, 416
BfuI GTATCC 1 cut(s) 191
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 31
BmsI GCATC 2 cut(s) 373, 536
BpmI CTGGAG 1 cut(s) 13
BpuEI CTTGAG 2 cut(s) 131, 421
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 570
BsaWI WCCGGW 1 cut(s) 359
Bse118I RCCGGY 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 97
Bse8I GATNNNNATC 1 cut(s) 243
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 570
BseGI GGATG 1 cut(s) 393
BseJI GATNNNNATC 1 cut(s) 243
BseMI GCAATG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 343
BsgI GTGCAG 2 cut(s) 228, 333
BshFI GGCC 1 cut(s) 143
BshTI ACCGGT 1 cut(s) 359
BsiSI CCGG 1 cut(s) 360
BsmAI GTCTC 2 cut(s) 300, 338
BsnI GGCC 1 cut(s) 143
Bsp143I GATC 3 cut(s) 121, 226, 426
BspACI CCGC 2 cut(s) 219, 397
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 342
BsrDI GCAATG 1 cut(s) 97
BsrFI RCCGGY 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 3 cut(s) 121, 226, 426
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 3 cut(s) 50, 257, 574
BstAPI GCANNNNNTGC 1 cut(s) 215
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 1 cut(s) 329
BstDSI CCRYGG 1 cut(s) 570
BstF5I GGATG 1 cut(s) 393
BstKTI GATC 3 cut(s) 124, 229, 429
BstMAI GTCTC 2 cut(s) 300, 338
BstMBI GATC 3 cut(s) 121, 226, 426
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 31
BstNSI RCATGY 3 cut(s) 488, 557, 588
BstSCI CCNGG 1 cut(s) 29
BsuI GTATCC 1 cut(s) 191
BsuRI GGCC 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 570
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 486
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 2 cut(s) 82, 315
CspAI ACCGGT 1 cut(s) 359
CviAII CATG 4 cut(s) 485, 515, 554, 585
CviJI RGCY 3 cut(s) 143, 326, 415
CviKI_1 RGCY 3 cut(s) 143, 326, 415
CviQI GTAC 2 cut(s) 82, 315
DdeI CTNAG 1 cut(s) 329
DpnI GATC 3 cut(s) 123, 228, 428
DpnII GATC 3 cut(s) 121, 226, 426
EaeI YGGCCR 1 cut(s) 141
Eco32I GATATC 1 cut(s) 447
Eco47I GGWCC 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 29
EcoRV GATATC 1 cut(s) 447
EcoT22I ATGCAT 1 cut(s) 388
FaeI CATG 4 cut(s) 488, 518, 557, 588
FatI CATG 4 cut(s) 484, 514, 553, 584
FauNDI CATATG 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 1 cut(s) 380
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 2 cut(s) 156, 416
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 13
HaeIII GGCC 1 cut(s) 143
HapII CCGG 1 cut(s) 360
Hin1II CATG 4 cut(s) 488, 518, 557, 588
HpaII CCGG 1 cut(s) 360
HphI GGTGA 1 cut(s) 522
Hpy188I TCNGA 1 cut(s) 550
Hpy188III TCNNGA 3 cut(s) 173, 283, 424
HpyCH4III ACNGT 3 cut(s) 50, 257, 574
HpyCH4V TGCA 9 cut(s) 97, 182, 209, 350, 386, 488, 499, 578, 618
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 329
Hsp92II CATG 4 cut(s) 488, 518, 557, 588
Kzo9I GATC 3 cut(s) 121, 226, 426
LpnPI CCDG 9 cut(s) 16, 43, 53, 217, 294, 373, 415, 425, 437
LweI GCATC 2 cut(s) 373, 536
MaeI CTAG 2 cut(s) 156, 416
MaeIII GTNAC 1 cut(s) 558
MalI GATC 3 cut(s) 123, 228, 428
MboI GATC 3 cut(s) 121, 226, 426
MboII GAAGA 2 cut(s) 287, 392
MfeI CAATTG 1 cut(s) 462
MlsI TGGCCA 1 cut(s) 143
MluCI AATT 4 cut(s) 39, 85, 406, 462
MluNI TGGCCA 1 cut(s) 143
MnlI CCTC 3 cut(s) 259, 259, 281
Mox20I TGGCCA 1 cut(s) 143
Mph1103I ATGCAT 1 cut(s) 388
MscI TGGCCA 1 cut(s) 143
Msp20I TGGCCA 1 cut(s) 143
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 31
MunI CAATTG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 31
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeI CATATG 1 cut(s) 340
NdeII GATC 3 cut(s) 121, 226, 426
NlaIII CATG 4 cut(s) 488, 518, 557, 588
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 3 cut(s) 488, 557, 588
PaeI GCATGC 1 cut(s) 488
PinAI ACCGGT 1 cut(s) 359
PkrI GCNGC 1 cut(s) 220
PpuMI RGGWCCY 1 cut(s) 268
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspPI GGNCC 1 cut(s) 268
PspPPI RGGWCCY 1 cut(s) 268
RsaI GTAC 2 cut(s) 83, 316
RsaNI GTAC 2 cut(s) 82, 315
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 3 cut(s) 121, 226, 426
Sau96I GGNCC 1 cut(s) 268
ScrFI CCNGG 1 cut(s) 31
SetI ASST 4 cut(s) 35, 111, 270, 417
SfaNI GCATC 2 cut(s) 373, 536
SinI GGWCC 1 cut(s) 268
SmlI CTYRAG 2 cut(s) 110, 400
SmoI CTYRAG 2 cut(s) 110, 400
SphI GCATGC 1 cut(s) 488
Sse9I AATT 4 cut(s) 39, 85, 406, 462
SsiI CCGC 2 cut(s) 219, 397
SspMI CTAG 2 cut(s) 156, 416
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 50, 257, 574
TaqI TCGA 3 cut(s) 273, 284, 423
TasI AATT 4 cut(s) 39, 85, 406, 462
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 221
TspDTI ATGAA 3 cut(s) 327, 393, 503
TspGWI ACGGA 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 406
XceI RCATGY 3 cut(s) 488, 557, 588
XspI CTAG 2 cut(s) 156, 416
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.