MD00G1185900.v1.1

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0003191
Physical Location & Seq
Reverse (-)
44166984 .. 44167235
252 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1185900.v1.1.491

Sequence Viewer

Length: 252 bp
ATGGGTTCGACATCGAAGTGTCAAGAGCGAGTTGATAGGATCAGTGAATTGCCAAATTCACTTCTTTGCCACATACTTTCATTCTTTCCGATATTAGATGCTGTGCAGACTACAATTCTGTCAAGACGATGGGAGAACTTATGGACTCCTCTTCCCAAACTTGAATTTGATGATGATTGTTTTCCTTATTCATGGATTGAATCCAACATGATTGTTTTCCTTATTCATGGATTGAATCCAATCGTTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

84

Amino Acids

9.7

Weight (kDa)

4.85

Isoelectric Point (pI)

59.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 51 4.5e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 2 cut(s) 55, 164
AgsI TTSAA 3 cut(s) 164, 200, 235
AlwI GGATC 1 cut(s) 47
ApoI RAATTY 2 cut(s) 55, 164
BccI CCATC 1 cut(s) 123
BmsI GCATC 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 138
BsgI GTGCAG 1 cut(s) 125
Bsp143I GATC 1 cut(s) 39
BspPI GGATC 1 cut(s) 47
BssMI GATC 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 156
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 49
CviAII CATG 3 cut(s) 192, 208, 227
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 156
EarI CTCTTC 1 cut(s) 156
FaeI CATG 3 cut(s) 195, 211, 230
FaiI YATR 5 cut(s) 74, 142, 193, 209, 228
FatI CATG 3 cut(s) 191, 207, 226
Hin1II CATG 3 cut(s) 195, 211, 230
HinfI GANTC 3 cut(s) 145, 200, 235
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 2 cut(s) 23, 123
HpyCH4V TGCA 1 cut(s) 106
Hsp92II CATG 3 cut(s) 195, 211, 230
Kzo9I GATC 1 cut(s) 39
LweI GCATC 1 cut(s) 88
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 1 cut(s) 143
MluCI AATT 4 cut(s) 47, 55, 114, 164
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 1 cut(s) 159
MseI TTAA 1 cut(s) 250
MslI CAYNNNNRTG 1 cut(s) 16
NdeII GATC 1 cut(s) 39
NlaIII CATG 3 cut(s) 195, 211, 230
PfeI GAWTC 2 cut(s) 200, 235
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 16
SaqAI TTAA 1 cut(s) 250
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 1 cut(s) 139
SfaNI GCATC 1 cut(s) 88
SgeI CNNG 7 cut(s) 35, 41, 135, 173, 204, 220, 239
SmiMI CAYNNNNRTG 1 cut(s) 16
Sse9I AATT 4 cut(s) 47, 55, 114, 164
TaqI TCGA 2 cut(s) 8, 14
TasI AATT 4 cut(s) 47, 55, 114, 164
TfiI GAWTC 2 cut(s) 200, 235
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TscAI CASTG 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 69, 180, 215
TspRI CASTG 1 cut(s) 49
XapI RAATTY 2 cut(s) 55, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.