Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8513519.1

Orthogroup ID

OG0003191

Physical Location & Seq

Genomic Coordinates Forward (+)

2871 .. 3929

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8513519.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

atgcttcgcaaaagagcaactactcaaacatattcaagaccgcacctttcaaagaaatcaaggaaagaagaagaagacatgatcaccgaattaccagaagacgttcgccgccacattctctcgttcttgtcaactaaacacgccgtgtccactaccatcctttcaagaagttggaaaaacctatggaccttggcttcaaccaaaaacctagagcttgacgacagcctactcctccatcccgaaagtaattccgaaaccattcaccaccttccttctttattctctgatttcgtgaaccatgttctcggcctcatcagtgtgccatgtattcaaacactcaaactctgttgctcctacccttatgacccagatcacataaattgttggttacatacggcatgcaaatacaatgtcagtgagattaatatcagagtatacagtcaaaaccctatcaaattgccttcgaatttgtatggtagtacttggctggtggtactgaaattaaacgcgaatgtaagtctcgactttcgggactccatctcttttccaagactcaaggtgctttggataaaggtttatgacgcaaacgatgttaacttgacgcagaagcttttcagagatcacatctgccctattcttgaagagttgttcatagagggtgaaatattggatgagaatagcagagtggttttgttggtgatattgagttcacttaagaggttgaaaattgaataccgtttggcacatagttttcagggtggtattgagtacaattttgtgttgcattgccctaaccttgagtgccttgatctccgtgatgacttcttggccaagtatagtgctagggatttgaaagttcttgactatgcaaagattagtattggatacccctgtgcagattatgccgcatttgatctttatggcgatgtaaatccctctaaccgtgcgtttgaggtcctcgaagaactctcgaatgtcaagtctctatcattatctggtggtactacaaaggtatgcagttctccagtctctcagctaggtttttatagtactacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

352

Amino Acids

40.22

Weight (kDa)

6.46

Isoelectric Point (pI)

50.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19070
fragaria_vesca	FvH4_3g18163 FvH4_3g20090
malus_domestica	MD00G1185900.v1.1 MD03G1225700.v1.1 MD03G1253900.v1.1
prunus_persica	Prupe.4G183700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0345041 RchiOBHm_Chr3g0460671 RchiOBHm_Chr4g0417371 RchiOBHm_Chr5g0030621 RchiOBHm_Chr5g0033891 RchiOBHm_Chr6g0283051 RchiOBHm_Chr7g0197871 RchiOBHm_Chr7g0237061 RchiOBHm_Chr7g0237081
rosa_laevigata	RLG00000033508
rosa_multiflora	Rmu_co8513519.1_g000001 Rmu_sc0001150.1_g000016 Rmu_sc0008328.1_g000003 Rmu_sc0022678.1_g000006
rosa_roxburghii	Rroxscaffold_1G00046320 Rroxscaffold_4G00317750
rosa_rugosa	Rorug03G0129400.1 Rorug05G0143000 Rorug05G0333600 Rorug05G0333700 Rorug05G0333800
rosa_samantha	Rh5AG211200 Rh5AG233900 Rh5BG234500 Rh5CG264800 Rh5DG198300 Rh5DG241400 Rh6BG371200 Rh7AG457800
rosa_wichuraiana	Rw5G021540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	435
AccII	CGCG	1 cut(s)	509
AciI	CCGC	3 cut(s)	41, 109, 906
AcoI	YGGCCR	1 cut(s)	828
AcsI	RAATTY	1 cut(s)	466
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	5 cut(s)	481, 495, 770, 1003, 1051
AflII	CTTAAG	1 cut(s)	713
AgsI	TTSAA	9 cut(s)	36, 51, 165, 198, 332, 641, 724, 731, 853
AluBI	AGCT	3 cut(s)	214, 610, 1036
AluI	AGCT	3 cut(s)	214, 610, 1036
Alw26I	GTCTC	3 cut(s)	524, 987, 1033
AoxI	GGCC	2 cut(s)	307, 828
ApoI	RAATTY	1 cut(s)	466
ArsI	GACNNNNNNTTYG	4 cut(s)	396, 428, 965, 997
AseI	ATTAAT	1 cut(s)	423
Asp700I	GAANNNNTTC	3 cut(s)	102, 258, 611
AspS9I	GGNCC	2 cut(s)	186, 955
AsuHPI	GGTGA	4 cut(s)	76, 254, 671, 709
AsuII	TTCGAA	1 cut(s)	464
AvaII	GGWCC	2 cut(s)	186, 955
BaeI	ACNNNNGTAYC	2 cut(s)	877, 910
BalI	TGGCCA	1 cut(s)	830
BbsI	GAAGAC	2 cut(s)	81, 105
BccI	CCATC	3 cut(s)	164, 243, 545
BceAI	ACGGC	2 cut(s)	128, 411
BciVI	GTATCC	1 cut(s)	878
BclI	TGATCA	1 cut(s)	81
BcoDI	GTCTC	3 cut(s)	524, 987, 1033
BfaI	CTAG	3 cut(s)	209, 843, 1037
BfrI	CTTAAG	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	878
BisI	GCNGC	2 cut(s)	109, 906
BlsI	GCNGC	2 cut(s)	110, 907
BmcAI	AGTACT	2 cut(s)	481, 1051
Bme18I	GGWCC	2 cut(s)	186, 955
BmgT120I	GGNCC	2 cut(s)	186, 955
BpiI	GAAGAC	2 cut(s)	81, 105
BpmI	CTGGAG	1 cut(s)	1008
Bpu14I	TTCGAA	1 cut(s)	464
BpuEI	CTTGAG	2 cut(s)	539, 818
BsaBI	GATNNNNATC	2 cut(s)	425, 930
BsaJI	CCNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	1025
Bse3DI	GCAATG	1 cut(s)	784
Bse8I	GATNNNNATC	2 cut(s)	425, 930
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	3 cut(s)	156, 235, 676
BseJI	GATNNNNATC	2 cut(s)	425, 930
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	1 cut(s)	1046
BseNI	ACTGG	1 cut(s)	1025
BseRI	GAGGAG	1 cut(s)	221
BsgI	GTGCAG	1 cut(s)	915
Bsh1236I	CGCG	1 cut(s)	509
BshFI	GGCC	2 cut(s)	309, 830
BslFI	GGGAC	1 cut(s)	545
BsmAI	GTCTC	3 cut(s)	524, 987, 1033
BsmFI	GGGAC	1 cut(s)	545
BsnI	GGCC	2 cut(s)	309, 830
Bsp119I	TTCGAA	1 cut(s)	464
Bsp143I	GATC	5 cut(s)	81, 370, 619, 808, 913
BspACI	CCGC	3 cut(s)	41, 109, 906
BspANI	GGCC	2 cut(s)	309, 830
BspCNI	CTCAG	1 cut(s)	1045
BspFNI	CGCG	1 cut(s)	509
BspT104I	TTCGAA	1 cut(s)	464
BspTI	CTTAAG	1 cut(s)	713
BsrDI	GCAATG	1 cut(s)	784
BsrI	ACTGG	1 cut(s)	1025
BssECI	CCNNGG	1 cut(s)	189
BssMI	GATC	5 cut(s)	81, 370, 619, 808, 913
BssNAI	GTATAC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	189
Bst1107I	GTATAC	1 cut(s)	436
Bst4CI	ACNGT	3 cut(s)	440, 737, 944
Bst6I	CTCTTC	1 cut(s)	636
BstAFI	CTTAAG	1 cut(s)	713
BstAPI	GCANNNNNTGC	1 cut(s)	902
BstBI	TTCGAA	1 cut(s)	464
BstC8I	GCNNGC	1 cut(s)	400
BstDEI	CTNAG	2 cut(s)	1032, 1056
BstF5I	GGATG	3 cut(s)	156, 235, 676
BstFNI	CGCG	1 cut(s)	509
BstKTI	GATC	5 cut(s)	84, 373, 622, 811, 916
BstMAI	GTCTC	3 cut(s)	524, 987, 1033
BstMBI	GATC	5 cut(s)	81, 370, 619, 808, 913
BstMWI	GCNNNNNNNGC	1 cut(s)	902
BstNSI	RCATGY	1 cut(s)	402
BstUI	CGCG	1 cut(s)	509
BstV2I	GAAGAC	2 cut(s)	81, 105
BstZ17I	GTATAC	1 cut(s)	436
BsuI	GTATCC	1 cut(s)	878
BsuRI	GGCC	2 cut(s)	309, 830
BtgZI	GCGATG	1 cut(s)	939
BtsCI	GGATG	3 cut(s)	156, 235, 676
BtsIMutI	CAGTG	2 cut(s)	322, 421
Cac8I	GCNNGC	1 cut(s)	400
Cfr13I	GGNCC	2 cut(s)	186, 955
CseI	GACGC	2 cut(s)	590, 610
Csp6I	GTAC	5 cut(s)	480, 494, 769, 1002, 1050
CviAII	CATG	4 cut(s)	79, 299, 324, 399
CviJI	RGCY	8 cut(s)	194, 214, 225, 309, 487, 610, 830, 1036
CviKI_1	RGCY	8 cut(s)	194, 214, 225, 309, 487, 610, 830, 1036
CviQI	GTAC	5 cut(s)	480, 494, 769, 1002, 1050
DdeI	CTNAG	2 cut(s)	1032, 1056
DpnI	GATC	5 cut(s)	83, 372, 621, 810, 915
DpnII	GATC	5 cut(s)	81, 370, 619, 808, 913
DraIII	CACNNNGTG	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	828
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
Eco130I	CCWWGG	1 cut(s)	189
Eco47I	GGWCC	2 cut(s)	186, 955
EcoO109I	RGGNCCY	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
FaeI	CATG	4 cut(s)	82, 302, 327, 402
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	4 cut(s)	78, 298, 323, 398
FbaI	TGATCA	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	109, 906
FokI	GGATG	3 cut(s)	143, 222, 683
Fsp4HI	GCNGC	2 cut(s)	109, 906
FspBI	CTAG	3 cut(s)	209, 843, 1037
GluI	GCNGC	2 cut(s)	109, 906
GsuI	CTGGAG	1 cut(s)	1008
HaeIII	GGCC	2 cut(s)	309, 830
HgaI	GACGC	2 cut(s)	590, 610
Hin1II	CATG	4 cut(s)	82, 302, 327, 402
HincII	GTYRAC	2 cut(s)	132, 595
HindII	GTYRAC	2 cut(s)	132, 595
HindIII	AAGCTT	1 cut(s)	608
HinfI	GANTC	2 cut(s)	533, 552
HpaI	GTTAAC	1 cut(s)	595
HphI	GGTGA	4 cut(s)	76, 254, 671, 709
Hpy166II	GTNNAC	6 cut(s)	132, 150, 295, 436, 595, 710
Hpy188I	TCNGA	4 cut(s)	253, 286, 431, 617
Hpy188III	TCNNGA	9 cut(s)	36, 165, 239, 292, 521, 530, 638, 860, 970
Hpy8I	GTNNAC	6 cut(s)	132, 150, 295, 436, 595, 710
HpyAV	CCTTC	3 cut(s)	278, 282, 471
HpyCH4III	ACNGT	3 cut(s)	440, 737, 944
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	5 cut(s)	402, 784, 869, 896, 1017
HpyF10VI	GCNNNNNNNGC	1 cut(s)	902
HpyF3I	CTNAG	2 cut(s)	1032, 1056
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	4 cut(s)	82, 302, 327, 402
Ksp22I	TGATCA	1 cut(s)	81
KspAI	GTTAAC	1 cut(s)	595
Kzo9I	GATC	5 cut(s)	81, 370, 619, 808, 913
LmnI	GCTCC	1 cut(s)	356
LpnPI	CCDG	7 cut(s)	108, 381, 473, 740, 904, 981, 1038
MaeI	CTAG	3 cut(s)	209, 843, 1037
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	387
MalI	GATC	5 cut(s)	83, 372, 621, 810, 915
MboI	GATC	5 cut(s)	81, 370, 619, 808, 913
MboII	GAAGA	6 cut(s)	80, 83, 86, 110, 653, 974
MlsI	TGGCCA	1 cut(s)	830
MluCI	AATT	8 cut(s)	89, 247, 379, 455, 466, 500, 726, 772
MluNI	TGGCCA	1 cut(s)	830
MlyI	GAGTC	2 cut(s)	527, 546
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	7 cut(s)	242, 320, 649, 711, 946, 946, 968
Mox20I	TGGCCA	1 cut(s)	830
MroXI	GAANNNNTTC	3 cut(s)	102, 258, 611
MscI	TGGCCA	1 cut(s)	830
MseI	TTAA	4 cut(s)	423, 503, 594, 714
MslI	CAYNNNNRTG	1 cut(s)	317
Msp20I	TGGCCA	1 cut(s)	830
MspCI	CTTAAG	1 cut(s)	713
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	902
NdeII	GATC	5 cut(s)	81, 370, 619, 808, 913
NlaIII	CATG	4 cut(s)	82, 302, 327, 402
NmeAIII	GCCGAG	1 cut(s)	285
NspI	RCATGY	1 cut(s)	402
NspV	TTCGAA	1 cut(s)	464
PaeI	GCATGC	1 cut(s)	402
PdmI	GAANNNNTTC	3 cut(s)	102, 258, 611
PkrI	GCNGC	2 cut(s)	110, 907
PleI	GAGTC	2 cut(s)	527, 546
PpsI	GAGTC	2 cut(s)	527, 546
PpuMI	RGGWCCY	1 cut(s)	955
PshBI	ATTAAT	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	955
PspPI	GGNCC	2 cut(s)	186, 955
PspPPI	RGGWCCY	1 cut(s)	955
RsaI	GTAC	5 cut(s)	481, 495, 770, 1003, 1051
RsaNI	GTAC	5 cut(s)	480, 494, 769, 1002, 1050
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	4 cut(s)	423, 503, 594, 714
SatI	GCNGC	2 cut(s)	109, 906
Sau3AI	GATC	5 cut(s)	81, 370, 619, 808, 913
Sau96I	GGNCC	2 cut(s)	186, 955
ScaI	AGTACT	2 cut(s)	481, 1051
SchI	GAGTC	2 cut(s)	527, 546
SfuI	TTCGAA	1 cut(s)	464
SinI	GGWCC	2 cut(s)	186, 955
SmiMI	CAYNNNNRTG	1 cut(s)	317
SmlI	CTYRAG	3 cut(s)	554, 713, 797
SmoI	CTYRAG	3 cut(s)	554, 713, 797
SphI	GCATGC	1 cut(s)	402
Sse9I	AATT	8 cut(s)	89, 247, 379, 455, 466, 500, 726, 772
SsiI	CCGC	3 cut(s)	41, 109, 906
SspI	AATATT	1 cut(s)	666
SspMI	CTAG	3 cut(s)	209, 843, 1037
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	3 cut(s)	440, 737, 944
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	464, 522, 960, 971
TasI	AATT	8 cut(s)	89, 247, 379, 455, 466, 500, 726, 772
TatI	WGTACW	3 cut(s)	479, 768, 1049
TauI	GCSGC	2 cut(s)	111, 908
Tru1I	TTAA	4 cut(s)	423, 503, 594, 714
Tru9I	TTAA	4 cut(s)	423, 503, 594, 714
TscAI	CASTG	2 cut(s)	322, 421
TspDTI	ATGAA	1 cut(s)	640
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	2 cut(s)	322, 421
Vha464I	CTTAAG	1 cut(s)	713
VpaK11BI	GGWCC	2 cut(s)	186, 955
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	3 cut(s)	102, 258, 611
XspI	CTAG	3 cut(s)	209, 843, 1037
ZrmI	AGTACT	2 cut(s)	481, 1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.