Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Reverse (-)

18506089 .. 18506411

Gene Structure 323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGACTGCCAGATGCCAAAAATGGATGGTTGCGAAGCGACCAGGGAAATAAGAAAAGAGGAGAAATTGTACAATGTTCGCATTCCGATCATTGCATTAACAGCTCATGAAAAAGGAGGCGAGGAAACAAGAAGGATGATGGAGGCTGATATGGATGAAAATTTAGAGAAAACTGCCATAACGACTAGTCTAGTGGAAACACTTGGAAAGATTGATCATAGTACTAAAGCGAATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

80

Amino Acids

9.02

Weight (kDa)

5.37

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	1 - 67	2.6e-10	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	160
AfaI	GTAC	2 cut(s)	71, 223
AhlI	ACTAGT	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	160
BccI	CCATC	2 cut(s)	20, 133
BciT130I	CCWGG	1 cut(s)	43
BclI	TGATCA	1 cut(s)	214
BcuI	ACTAGT	1 cut(s)	185
BfaI	CTAG	2 cut(s)	186, 191
BmcAI	AGTACT	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	3
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	3 cut(s)	31, 141, 160
BseMI	GCAATG	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	81
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	87, 214
BspHI	TCATGA	1 cut(s)	106
BsrDI	GCAATG	1 cut(s)	90
BsrGI	TGTACA	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	87, 214
Bst2UI	CCWGG	1 cut(s)	43
BstAUI	TGTACA	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	31, 141, 160
BstKTI	GATC	2 cut(s)	90, 217
BstMBI	GATC	2 cut(s)	87, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BtsCI	GGATG	3 cut(s)	31, 141, 160
CciI	TCATGA	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	70, 222
CviAII	CATG	1 cut(s)	107
CviJI	RGCY	2 cut(s)	104, 146
CviKI_1	RGCY	2 cut(s)	104, 146
CviQI	GTAC	2 cut(s)	70, 222
DpnI	GATC	2 cut(s)	89, 216
DpnII	GATC	2 cut(s)	87, 214
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	110
FaiI	YATR	4 cut(s)	108, 152, 179, 219
FatI	CATG	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	214
FokI	GGATG	3 cut(s)	38, 148, 167
FspBI	CTAG	2 cut(s)	186, 191
Hin1II	CATG	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	87
Hpy188III	TCNNGA	1 cut(s)	107
HpyAV	CCTTC	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	110
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	2 cut(s)	87, 214
LpnPI	CCDG	3 cut(s)	23, 28, 55
LweI	GCATC	1 cut(s)	3
MaeI	CTAG	2 cut(s)	186, 191
MalI	GATC	2 cut(s)	89, 216
MboI	GATC	2 cut(s)	87, 214
MluCI	AATT	2 cut(s)	65, 160
MnlI	CCTC	4 cut(s)	52, 110, 115, 136
MseI	TTAA	1 cut(s)	98
MspR9I	CCNGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	101
NdeII	GATC	2 cut(s)	87, 214
NlaIII	CATG	1 cut(s)	110
PagI	TCATGA	1 cut(s)	106
PctI	GAATGC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
RsaI	GTAC	2 cut(s)	71, 223
RsaNI	GTAC	2 cut(s)	70, 222
SaqAI	TTAA	1 cut(s)	98
Sau3AI	GATC	2 cut(s)	87, 214
ScaI	AGTACT	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	43
SetI	ASST	1 cut(s)	106
SfaNI	GCATC	1 cut(s)	3
SgeI	CNNG	9 cut(s)	22, 54, 55, 119, 133, 141, 198, 203, 215
SpeI	ACTAGT	1 cut(s)	185
Sse9I	AATT	2 cut(s)	65, 160
SspMI	CTAG	2 cut(s)	186, 191
StyD4I	CCNGG	1 cut(s)	41
TasI	AATT	2 cut(s)	65, 160
TatI	WGTACW	2 cut(s)	69, 221
Tru1I	TTAA	1 cut(s)	98
Tru9I	TTAA	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	123, 171
XapI	RAATTY	1 cut(s)	160
XspI	CTAG	2 cut(s)	186, 191
ZrmI	AGTACT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.