Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

43227014 .. 43227622

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG316400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGACCAGTCTGATAATGTTGGTTCTACGCCAAGAAATTCACCAGTTGGTCATGACCATACACTTCTTCATAGAGAAATACATGAACATGGTAAGCCAAGCATGCACACCCTTGAGTGGGAAAAAAAATTTGGTTGCTGAGGATGATGACCTTCTGAGCTATTTGGCTATGAGGATTCTGTTAAAGGTGGGACCAACTGTGAAGCTTTGTGAAAATGGAGGAGAAGCTCCAGATGTAATTCGCATAGATATACTCAACCAAGGGAAACATGAATATACTAATGGACTGTCAGTGAGTGACTTTGGTGTTGAAATTAACATGCAGATGCCAGAAATGGATGGATTTGAGGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATATCCGCATTCTGATCATTGCATTAACAGCTCATACACCAGGCGAGGAAACAAGAAAGATGTTGGAGGCTGGCATGGATGACTATTTGAGCAAACCCTTGGAAAAGGGTCGTCTACTTGAAACAATGGGTAGACTGGTGGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

177

Amino Acids

20.01

Weight (kDa)

5.88

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	45 - 170	1.6e-13	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	499, 517
AciI	CCGC	1 cut(s)	391
AcsI	RAATTY	2 cut(s)	36, 127
AfiI	CCNNNNNNNGG	2 cut(s)	116, 117
AgsI	TTSAA	2 cut(s)	311, 506
AjnI	CCWGG	1 cut(s)	424
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	4 cut(s)	159, 205, 227, 416
AluI	AGCT	4 cut(s)	159, 205, 227, 416
ApoI	RAATTY	2 cut(s)	36, 127
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	32, 374
AvaII	GGWCC	1 cut(s)	191
BbvCI	CCTCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	332
BciT130I	CCWGG	1 cut(s)	426
BclI	TGATCA	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	426
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	426
BmsI	GCATC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	259, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 117
Bse1I	ACTGG	3 cut(s)	6, 43, 525
Bse3DI	GCAATG	1 cut(s)	402
BseBI	CCWGG	1 cut(s)	426
BseDI	CCNNGG	2 cut(s)	259, 483
BseGI	GGATG	3 cut(s)	148, 343, 469
BseLI	CCNNNNNNNGG	2 cut(s)	116, 117
BseMI	GCAATG	1 cut(s)	402
BseMII	CTCAG	2 cut(s)	129, 146
BseNI	ACTGG	3 cut(s)	6, 43, 525
BseRI	GAGGAG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	2 cut(s)	116, 117
BsmFI	GGGAC	1 cut(s)	204
BsmI	GAATGC	1 cut(s)	393
Bsp143I	GATC	1 cut(s)	399
BspACI	CCGC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	130, 147
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	402
BsrI	ACTGG	3 cut(s)	6, 43, 525
BssECI	CCNNGG	2 cut(s)	259, 483
BssMI	GATC	1 cut(s)	399
BssT1I	CCWWGG	2 cut(s)	259, 483
Bst2UI	CCWGG	1 cut(s)	426
Bst4CI	ACNGT	2 cut(s)	199, 288
BstC8I	GCNNGC	2 cut(s)	103, 457
BstDEI	CTNAG	2 cut(s)	138, 155
BstF5I	GGATG	3 cut(s)	148, 343, 469
BstKTI	GATC	1 cut(s)	402
BstMBI	GATC	1 cut(s)	399
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 413
BstNI	CCWGG	1 cut(s)	426
BstNSI	RCATGY	2 cut(s)	105, 322
BstSCI	CCNGG	1 cut(s)	424
BtsCI	GGATG	3 cut(s)	148, 343, 469
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	103, 457
CciI	TCATGA	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	191
CviAII	CATG	7 cut(s)	52, 82, 88, 102, 269, 319, 460
CviJI	RGCY	7 cut(s)	96, 159, 167, 205, 227, 416, 455
CviKI_1	RGCY	7 cut(s)	96, 159, 167, 205, 227, 416, 455
DdeI	CTNAG	2 cut(s)	138, 155
DpnI	GATC	1 cut(s)	401
DpnII	GATC	1 cut(s)	399
Eco130I	CCWWGG	2 cut(s)	259, 483
Eco47I	GGWCC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	424
EcoT14I	CCWWGG	2 cut(s)	259, 483
ErhI	CCWWGG	2 cut(s)	259, 483
FaeI	CATG	7 cut(s)	55, 85, 91, 105, 272, 322, 463
FaqI	GGGAC	1 cut(s)	204
FatI	CATG	7 cut(s)	51, 81, 87, 101, 268, 318, 459
FbaI	TGATCA	1 cut(s)	399
FblI	GTMKAC	2 cut(s)	499, 517
FokI	GGATG	3 cut(s)	155, 350, 476
GsuI	CTGGAG	1 cut(s)	213
Hin1II	CATG	7 cut(s)	55, 85, 91, 105, 272, 322, 463
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	2 cut(s)	32, 374
Hpy166II	GTNNAC	2 cut(s)	500, 518
Hpy188I	TCNGA	3 cut(s)	12, 156, 399
Hpy188III	TCNNGA	2 cut(s)	52, 230
Hpy8I	GTNNAC	2 cut(s)	500, 518
HpyAV	CCTTC	1 cut(s)	161
HpyCH4III	ACNGT	2 cut(s)	199, 288
HpyCH4V	TGCA	3 cut(s)	105, 322, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 413
HpyF3I	CTNAG	2 cut(s)	138, 155
Hsp92II	CATG	7 cut(s)	55, 85, 91, 105, 272, 322, 463
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	8 cut(s)	19, 56, 243, 342, 411, 438, 441, 506
LweI	GCATC	1 cut(s)	315
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	1 cut(s)	401
MboI	GATC	1 cut(s)	399
MboII	GAAGA	1 cut(s)	58
MluCI	AATT	4 cut(s)	36, 127, 237, 312
MmeI	TCCRAC	1 cut(s)	429
MnlI	CCTC	6 cut(s)	133, 165, 212, 340, 424, 445
MseI	TTAA	3 cut(s)	182, 315, 410
MslI	CAYNNNNRTG	2 cut(s)	86, 323
MspR9I	CCNGG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	426
MwoI	GCNNNNNNNGC	2 cut(s)	102, 413
NdeII	GATC	1 cut(s)	399
NlaIII	CATG	7 cut(s)	55, 85, 91, 105, 272, 322, 463
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	1 cut(s)	296
NspI	RCATGY	2 cut(s)	105, 322
PaeI	GCATGC	1 cut(s)	105
PagI	TCATGA	1 cut(s)	51
PctI	GAATGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	175
Psp6I	CCWGG	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	191
RseI	CAYNNNNRTG	2 cut(s)	86, 323
SaqAI	TTAA	3 cut(s)	182, 315, 410
Sau3AI	GATC	1 cut(s)	399
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	426
SetI	ASST	6 cut(s)	153, 161, 189, 207, 229, 418
SfaNI	GCATC	1 cut(s)	315
SinI	GGWCC	1 cut(s)	191
SmiMI	CAYNNNNRTG	2 cut(s)	86, 323
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
SphI	GCATGC	1 cut(s)	105
Sse9I	AATT	4 cut(s)	36, 127, 237, 312
SsiI	CCGC	1 cut(s)	391
StyD4I	CCNGG	1 cut(s)	424
StyI	CCWWGG	2 cut(s)	259, 483
TaaI	ACNGT	2 cut(s)	199, 288
TasI	AATT	4 cut(s)	36, 127, 237, 312
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	3 cut(s)	182, 315, 410
Tru9I	TTAA	3 cut(s)	182, 315, 410
TscAI	CASTG	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	296
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	3 cut(s)	58, 98, 285
TspRI	CASTG	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	191
XapI	RAATTY	2 cut(s)	36, 127
XceI	RCATGY	2 cut(s)	105, 322
XmiI	GTMKAC	2 cut(s)	499, 517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.