Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Reverse (-)

63272981 .. 63273721

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG471800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGGGTGCAATACCAAAGAGATCAGAAGGGGGCACATTTCAAGTTACTTGAATGTCGAGCTCCTAGTCAATCAAGACATCGGTTACATACAGATGATGAATCTGATATCCCATCTTCACCAATGCAATATCATGACCAGTCTGATAATGTTGGTTCTATGCTAAGAAATTCACCAATTGGTCATGACCATACACTTCTGCATAGAGAAATACATGAACATGGTAAGCCAAGCATGCACACCCTTGAGTGGGAAAAAAATTTGGTTGCTGAGGATGATGACCTTCTGAGCTATTTGGCTATGAGGATTCTGTTAAAGCTGGGAGCAACTGTGAAGCTTTGTGAAAATGGAGGAGAAGCTCCAGATGTAATTCGCATAGATCTACTCAACCAAGGGAAACATGAATATACTAATGGACTGTCAGTGAGTGACTTTGGTGTTGAAATTAACATGCAAATGCCAAAAATGGATGGATTTGAGGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTCTGCATTCCGATCATTGGATTAACAGCTCATACACCAAGCGAGGAAACAAGAAGGATGTTGGAGGCTGGCATGGATGACTATTTGAGCAAACCCTTGGAAAAGGGTCGTCTACTTGAAACAATGGGTAGACTGGTGGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

221

Amino Acids

25.08

Weight (kDa)

5.94

Isoelectric Point (pI)

30.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	88 - 214	2.1e-14	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	631, 649
AcsI	RAATTY	2 cut(s)	169, 259
AfiI	CCNNNNNNNGG	3 cut(s)	249, 250, 536
AgsI	TTSAA	4 cut(s)	43, 53, 443, 638
AluBI	AGCT	6 cut(s)	62, 291, 319, 337, 359, 548
AluI	AGCT	6 cut(s)	62, 291, 319, 337, 359, 548
Alw21I	GWGCWC	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	169, 259
AsuHPI	GGTGA	3 cut(s)	111, 165, 506
BaeGI	GKGCMC	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	64
Bbv12I	GWGCWC	1 cut(s)	64
BbvCI	CCTCAGC	1 cut(s)	270
BccI	CCATC	2 cut(s)	121, 464
BfaI	CTAG	1 cut(s)	66
BglII	AGATCT	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	391, 615
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	3 cut(s)	249, 250, 536
Bse1I	ACTGG	2 cut(s)	139, 657
BseDI	CCNNGG	2 cut(s)	391, 615
BseGI	GGATG	4 cut(s)	280, 475, 582, 601
BseLI	CCNNNNNNNGG	3 cut(s)	249, 250, 536
BseMII	CTCAG	2 cut(s)	261, 278
BseNI	ACTGG	2 cut(s)	139, 657
BseRI	GAGGAG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	64
BslI	CCNNNNNNNGG	3 cut(s)	249, 250, 536
BsmI	GAATGC	1 cut(s)	525
Bsp1286I	GDGCHC	2 cut(s)	37, 64
Bsp143I	GATC	3 cut(s)	22, 379, 531
BspCNI	CTCAG	2 cut(s)	262, 279
BspHI	TCATGA	2 cut(s)	133, 184
BsrI	ACTGG	2 cut(s)	139, 657
BssECI	CCNNGG	2 cut(s)	391, 615
BssMI	GATC	3 cut(s)	22, 379, 531
BssT1I	CCWWGG	2 cut(s)	391, 615
Bst4CI	ACNGT	2 cut(s)	331, 420
BstC8I	GCNNGC	2 cut(s)	236, 589
BstDEI	CTNAG	3 cut(s)	164, 270, 287
BstF5I	GGATG	4 cut(s)	280, 475, 582, 601
BstKTI	GATC	3 cut(s)	25, 382, 534
BstMBI	GATC	3 cut(s)	22, 379, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	235
BstNSI	RCATGY	2 cut(s)	238, 454
BstSLI	GKGCMC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BtsCI	GGATG	4 cut(s)	280, 475, 582, 601
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	236, 589
CciI	TCATGA	2 cut(s)	133, 184
CviAII	CATG	9 cut(s)	134, 185, 215, 221, 235, 401, 451, 518, 592
CviJI	RGCY	9 cut(s)	62, 229, 291, 299, 319, 337, 359, 548, 587
CviKI_1	RGCY	9 cut(s)	62, 229, 291, 299, 319, 337, 359, 548, 587
DdeI	CTNAG	3 cut(s)	164, 270, 287
DpnI	GATC	3 cut(s)	24, 381, 533
DpnII	GATC	3 cut(s)	22, 379, 531
Ecl136II	GAGCTC	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	391, 615
Eco24I	GRGCYC	1 cut(s)	64
Eco32I	GATATC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	62
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	2 cut(s)	391, 615
EcoT38I	GRGCYC	1 cut(s)	64
ErhI	CCWWGG	2 cut(s)	391, 615
FaeI	CATG	9 cut(s)	137, 188, 218, 224, 238, 404, 454, 521, 595
FatI	CATG	9 cut(s)	133, 184, 214, 220, 234, 400, 450, 517, 591
FblI	GTMKAC	2 cut(s)	631, 649
FokI	GGATG	4 cut(s)	287, 482, 589, 608
FriOI	GRGCYC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	66
GsaI	CCCAGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	345
Hin1II	CATG	9 cut(s)	137, 188, 218, 224, 238, 404, 454, 521, 595
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	101, 307
HphI	GGTGA	3 cut(s)	111, 165, 506
Hpy166II	GTNNAC	2 cut(s)	632, 650
Hpy188I	TCNGA	5 cut(s)	27, 106, 145, 288, 531
Hpy188III	TCNNGA	4 cut(s)	75, 134, 185, 362
Hpy8I	GTNNAC	2 cut(s)	632, 650
HpyAV	CCTTC	3 cut(s)	22, 293, 567
HpyCH4III	ACNGT	2 cut(s)	331, 420
HpyCH4V	TGCA	6 cut(s)	10, 127, 202, 238, 454, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	235
HpyF3I	CTNAG	3 cut(s)	164, 270, 287
Hsp92II	CATG	9 cut(s)	137, 188, 218, 224, 238, 404, 454, 521, 595
Kzo9I	GATC	3 cut(s)	22, 379, 531
LmnI	GCTCC	3 cut(s)	67, 323, 364
LpnPI	CCDG	5 cut(s)	152, 305, 375, 573, 638
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	45, 84, 428
MalI	GATC	3 cut(s)	24, 381, 533
MboI	GATC	3 cut(s)	22, 379, 531
MboII	GAAGA	1 cut(s)	108
MfeI	CAATTG	1 cut(s)	177
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	37, 64
MluCI	AATT	5 cut(s)	169, 177, 259, 369, 444
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	6 cut(s)	265, 297, 344, 472, 556, 577
MseI	TTAA	3 cut(s)	314, 447, 542
MslI	CAYNNNNRTG	3 cut(s)	93, 219, 455
MunI	CAATTG	1 cut(s)	177
Mva1269I	GAATGC	1 cut(s)	525
MwoI	GCNNNNNNNGC	1 cut(s)	235
NdeII	GATC	3 cut(s)	22, 379, 531
NlaIII	CATG	9 cut(s)	137, 188, 218, 224, 238, 404, 454, 521, 595
NmuCI	GTSAC	1 cut(s)	428
NspI	RCATGY	2 cut(s)	238, 454
PaeI	GCATGC	1 cut(s)	238
PagI	TCATGA	2 cut(s)	133, 184
PctI	GAATGC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	101, 307
Psp124BI	GAGCTC	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	319
PsuI	RGATCY	1 cut(s)	379
RseI	CAYNNNNRTG	3 cut(s)	93, 219, 455
SacI	GAGCTC	1 cut(s)	64
SaqAI	TTAA	3 cut(s)	314, 447, 542
Sau3AI	GATC	3 cut(s)	22, 379, 531
SduI	GDGCHC	2 cut(s)	37, 64
SetI	ASST	7 cut(s)	64, 285, 293, 321, 339, 361, 550
SmiMI	CAYNNNNRTG	3 cut(s)	93, 219, 455
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	5 cut(s)	169, 177, 259, 369, 444
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	64
StyI	CCWWGG	2 cut(s)	391, 615
TaaI	ACNGT	2 cut(s)	331, 420
TaqI	TCGA	1 cut(s)	58
TasI	AATT	5 cut(s)	169, 177, 259, 369, 444
TfiI	GAWTC	2 cut(s)	101, 307
Tru1I	TTAA	3 cut(s)	314, 447, 542
Tru9I	TTAA	3 cut(s)	314, 447, 542
TscAI	CASTG	1 cut(s)	429
TseFI	GTSAC	1 cut(s)	428
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	3 cut(s)	114, 231, 417
TspRI	CASTG	1 cut(s)	429
XapI	RAATTY	2 cut(s)	169, 259
XceI	RCATGY	2 cut(s)	238, 454
XmiI	GTMKAC	2 cut(s)	631, 649
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.