Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Reverse (-)

554415 .. 554744

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG003600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGAGAATTCTGTTAAAGGAGGGAGCAACTGTGAAGCTTTGTAAAAATGGAAGAGAAGCTCTAGATCTAATTCGCATAGATCTAGACAACCAAGGGAAACATGAATATGATTTTGTACTAATGGACTGTCAGATGCCAGAAATGGATGGATTTGAAGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTTCGCATTCCGATCATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

72

Amino Acids

8.39

Weight (kDa)

6.27

Isoelectric Point (pI)

14.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	3 - 66	2.4e-11	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	155
AluBI	AGCT	2 cut(s)	37, 59
AluI	AGCT	2 cut(s)	37, 59
ApoI	RAATTY	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	182
BccI	CCATC	1 cut(s)	140
BfaI	CTAG	2 cut(s)	62, 83
BglII	AGATCT	2 cut(s)	64, 79
BmsI	GCATC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse3DI	GCAATG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	151
BseMI	GCAATG	1 cut(s)	210
BsmI	GAATGC	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	64, 79, 207
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	3 cut(s)	64, 79, 207
BssT1I	CCWWGG	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	31, 128
Bst6I	CTCTTC	1 cut(s)	46
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	3 cut(s)	67, 82, 210
BstMBI	GATC	3 cut(s)	64, 79, 207
BstX2I	RGATCY	2 cut(s)	64, 79
BstYI	RGATCY	2 cut(s)	64, 79
BtsCI	GGATG	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	2 cut(s)	101, 194
CviJI	RGCY	2 cut(s)	37, 59
CviKI_1	RGCY	2 cut(s)	37, 59
CviQI	GTAC	1 cut(s)	116
DpnI	GATC	3 cut(s)	66, 81, 209
DpnII	GATC	3 cut(s)	64, 79, 207
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	6
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	2 cut(s)	104, 197
FaiI	YATR	5 cut(s)	77, 102, 108, 195, 217
FatI	CATG	2 cut(s)	100, 193
FokI	GGATG	1 cut(s)	158
FspBI	CTAG	2 cut(s)	62, 83
Hin1II	CATG	2 cut(s)	104, 197
HindIII	AAGCTT	1 cut(s)	35
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	132, 207
Hpy188III	TCNNGA	2 cut(s)	62, 83
HpyCH4III	ACNGT	2 cut(s)	31, 128
HpyCH4V	TGCA	1 cut(s)	215
Hsp92II	CATG	2 cut(s)	104, 197
Kzo9I	GATC	3 cut(s)	64, 79, 207
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	1 cut(s)	150
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	62, 83
MalI	GATC	3 cut(s)	66, 81, 209
MboI	GATC	3 cut(s)	64, 79, 207
MboII	GAAGA	1 cut(s)	63
MflI	RGATCY	2 cut(s)	64, 79
MluCI	AATT	2 cut(s)	6, 69
MnlI	CCTC	1 cut(s)	13
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	201
NdeII	GATC	3 cut(s)	64, 79, 207
NlaIII	CATG	2 cut(s)	104, 197
PctI	GAATGC	1 cut(s)	201
PsuI	RGATCY	2 cut(s)	64, 79
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	14
Sau3AI	GATC	3 cut(s)	64, 79, 207
SetI	ASST	2 cut(s)	39, 61
SfaNI	GCATC	1 cut(s)	123
SgeI	CNNG	7 cut(s)	74, 95, 104, 113, 149, 174, 206
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	2 cut(s)	6, 69
SspMI	CTAG	2 cut(s)	62, 83
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	2 cut(s)	31, 128
TasI	AATT	2 cut(s)	6, 69
TatI	WGTACW	1 cut(s)	115
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	117
XapI	RAATTY	1 cut(s)	6
XbaI	TCTAGA	2 cut(s)	61, 82
XspI	CTAG	2 cut(s)	62, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.