Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003953.1

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 473

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003953.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

atgccagaaatggatggatttgaagcaacgaggcagataaggaaagtggagaaatcttaccatgttcgcattccgatcattgcattaacagctcatacaccaggcgaggaaacaagacggatgttggaggccggcatggatgactatttgagaaaacccttggaaaaggatcgtctacttgaaacaatgagtagactggtaggcaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

69

Amino Acids

8.06

Weight (kDa)

8.11

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	175, 193
AclWI	GGATC	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	23, 182
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	129
BccI	CCATC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	102
BmrFI	CCNGG	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	159
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	159
BseGI	GGATG	3 cut(s)	19, 126, 145
BseMI	GCAATG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	75, 169
BspANI	GGCC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	75, 169
BssT1I	CCWWGG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	133
BstF5I	GGATG	3 cut(s)	19, 126, 145
BstKTI	GATC	2 cut(s)	78, 172
BstMBI	GATC	2 cut(s)	75, 169
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	3 cut(s)	19, 126, 145
Cac8I	GCNNGC	1 cut(s)	133
Cfr10I	RCCGGY	1 cut(s)	131
CviAII	CATG	2 cut(s)	62, 136
CviJI	RGCY	2 cut(s)	92, 131
CviKI_1	RGCY	2 cut(s)	92, 131
DpnI	GATC	2 cut(s)	77, 171
DpnII	GATC	2 cut(s)	75, 169
Eco130I	CCWWGG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	159
ErhI	CCWWGG	1 cut(s)	159
FaeI	CATG	2 cut(s)	65, 139
FaiI	YATR	3 cut(s)	63, 96, 137
FatI	CATG	2 cut(s)	61, 135
FblI	GTMKAC	2 cut(s)	175, 193
FokI	GGATG	3 cut(s)	26, 133, 152
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	2 cut(s)	65, 139
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	2 cut(s)	176, 194
Hpy188I	TCNGA	1 cut(s)	75
Hpy8I	GTNNAC	2 cut(s)	176, 194
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	65, 139
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	75, 169
LpnPI	CCDG	5 cut(s)	18, 87, 114, 145, 182
MalI	GATC	2 cut(s)	77, 171
MboI	GATC	2 cut(s)	75, 169
MmeI	TCCRAC	1 cut(s)	105
MnlI	CCTC	3 cut(s)	24, 100, 121
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	1 cut(s)	86
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	69
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	89
NaeI	GCCGGC	1 cut(s)	133
NdeII	GATC	2 cut(s)	75, 169
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	65, 139
PctI	GAATGC	1 cut(s)	69
PdiI	GCCGGC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
SaqAI	TTAA	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	75, 169
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	1 cut(s)	94
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	159
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	133
XmiI	GTMKAC	2 cut(s)	175, 193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.