Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Reverse (-)

34048672 .. 34050003

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0235900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGCTTGCAAAGCAGGCTTGGAGGTTAGTTAGTAACCCGGAGTCTCTCATTGCTCGGATTTACAAGGCAAAATACTTTCCTGATAATTCTTTTTGGCATGCTTCGACCCATAGTGCTCCATCTTATTCTTGGAGGAGCATTTTTTGGACGAGAGATTTGTTAAAATCAGGGTCATACTGGCAGGTGGGTGCTGGAAATATGGTGAGTGTTTGGACTGATGCATGGGTGCCAGGATTACCAAATTCAATCCCCATTTCTGGTCGGACAATGTATAATGAGAATATGACAGTTTGGGAATTGATTTGTGCACCAGGCTTGTGGGATGAGGCTAAAATCCGGTCTTTGTTTAATGGGGTAGAGGCAGAAGCTATCTTGGCAATCCCTCTCTCTAGACGTCTAGTGCATGACAGGATTGTATGGAGATGGAGACTTGAAAAAAAAGAAGAGTTCTCGGTAAAGACAGCTTATCGACATGCTTTCTCTGATAATGTGGAGAGGCCAATGATGTTGGATGGTACGATTCCTCAATTTTGGAAGAAAATTTGGCAAGCTAAGATTCCAGGTACTGCTAAAGTGAATATGTGGAAGATTTGTCACAATATACTTCCTTCTCTAGAGAGGTTGGTAACAAAACATGTTACTCTAGAGAGGTTGTCTTCAACTCTGTTTGATCTTTTCATCTTTCTTTTGTGGAGTGTGTGGAAAGAAAGGAATACTAGAGTTTGGGAAGGTAAAGCTAAGAGTGTGGGGGATGTTGTTTTATTTTCCACTTCCAGGCTACAAGATTATATCTATCATAATTCTTGTAATCTTGGTCATGGTAGAGGAGCTGATAGAGCGGTTCATTGGCAATGTCCTCCAATTGGCTGGGTCAAAATAAATATAGATGGGGCATTTGTGACTGCTTCTGGAGCAGGTGCCATTGGTTTGGTTTTGCGAGATGGCTCAGGAAACTTTCTTGTGAGTAAAGGAAGGCTAGTGTTGGGTTTGGTCTCTGCTGAGCATGCTGAACTTCTAGCGTGCAAGGAGGCACTTGAGCTTATAGTTGAGCAGTCCTTGCAACCTGTAATTGTGGAGACAAATTCTTTGGTTCTTAAACAGCAGCTCTCTCGCTCGGGTGTTAATTTGTCTAGACTGGGGCGTATATATGAAGATCTAGGAGTGCTTTTGGAAGCAATGCCTCATGTTCGGATAGTGCACACAAGAAGAGATGCAAATAAGGCGGCTCATCTAATGGCTGCACAAGCGTCTGCTACAGGCCAGACTCTTTTTTATTCTTCAGTTCCTTCTTTTCTTCATGAGGTTATTACTCATGAACTTTGTAATCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

443

Amino Acids

50.15

Weight (kDa)

9.35

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	294 - 415	1.7e-19	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	172, 905
AatII	GACGTC	1 cut(s)	397
Acc36I	ACCTGC	2 cut(s)	172, 905
AccB1I	GGYRCC	2 cut(s)	226, 917
AccBSI	CCGCTC	1 cut(s)	839
AciI	CCGC	2 cut(s)	839, 1223
AcsI	RAATTY	3 cut(s)	241, 540, 1081
AcuI	CTGAAG	1 cut(s)	1263
AcyI	GRCGYC	1 cut(s)	394
AfaI	GTAC	2 cut(s)	517, 565
AfiI	CCNNNNNNNGG	3 cut(s)	257, 774, 863
AflIII	ACRYGT	1 cut(s)	634
AgsI	TTSAA	3 cut(s)	246, 434, 660
AjnI	CCWGG	4 cut(s)	229, 310, 559, 773
AluBI	AGCT	7 cut(s)	368, 464, 551, 737, 830, 1039, 1105
AluI	AGCT	7 cut(s)	368, 464, 551, 737, 830, 1039, 1105
Alw21I	GWGCWC	3 cut(s)	118, 310, 1200
Alw26I	GTCTC	4 cut(s)	48, 421, 997, 1070
Alw44I	GTGCAC	2 cut(s)	306, 1196
AlwNI	CAGNNNCTG	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	1114
AoxI	GGCC	2 cut(s)	497, 1258
ApaLI	GTGCAC	2 cut(s)	306, 1196
ApeKI	GCWGC	2 cut(s)	1102, 1238
ApoI	RAATTY	3 cut(s)	241, 540, 1081
ArsI	GACNNNNNNTTYG	4 cut(s)	139, 171, 1069, 1101
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	1114
BaeGI	GKGCMC	2 cut(s)	310, 1200
BanI	GGYRCC	2 cut(s)	226, 917
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	3 cut(s)	118, 310, 1200
BbvI	GCAGC	2 cut(s)	1114, 1225
BccI	CCATC	5 cut(s)	127, 417, 506, 881, 935
BcgI	CGANNNNNNTGC	2 cut(s)	1091, 1125
BciT130I	CCWGG	4 cut(s)	231, 312, 561, 775
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	4 cut(s)	48, 421, 997, 1070
BfaI	CTAG	9 cut(s)	390, 398, 614, 644, 717, 977, 1016, 1131, 1157
BfmI	CTRYAG	1 cut(s)	1254
BfuAI	ACCTGC	2 cut(s)	172, 905
BglII	AGATCT	1 cut(s)	1153
BisI	GCNGC	3 cut(s)	1103, 1224, 1239
BlpI	GCTNAGC	1 cut(s)	999
BlsI	GCNGC	3 cut(s)	1104, 1225, 1240
Bme1390I	CCNGG	5 cut(s)	38, 231, 312, 561, 775
BmeT110I	CYCGRG	1 cut(s)	1114
BmiI	GGNNCC	2 cut(s)	228, 919
BmrFI	CCNGG	5 cut(s)	38, 231, 312, 561, 775
BmrI	ACTGGG	1 cut(s)	1145
BmsI	GCATC	2 cut(s)	208, 1201
BmuI	ACTGGG	1 cut(s)	1145
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	1 cut(s)	930
Bpu10I	CCTNAGC	1 cut(s)	946
Bpu1102I	GCTNAGC	1 cut(s)	999
BpuEI	CTTGAG	1 cut(s)	1055
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	394
BsaI	GGTCTC	1 cut(s)	997
BsaWI	WCCGGW	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	3 cut(s)	257, 774, 863
Bse1I	ACTGG	2 cut(s)	182, 1140
Bse3DI	GCAATG	3 cut(s)	48, 857, 1182
BseBI	CCWGG	4 cut(s)	231, 312, 561, 775
BseGI	GGATG	3 cut(s)	328, 517, 757
BseLI	CCNNNNNNNGG	3 cut(s)	257, 774, 863
BseMI	GCAATG	3 cut(s)	48, 857, 1182
BseMII	CTCAG	2 cut(s)	960, 990
BseNI	ACTGG	2 cut(s)	182, 1140
BseRI	GAGGAG	2 cut(s)	148, 840
BseSI	GKGCMC	2 cut(s)	310, 1200
BseXI	GCAGC	2 cut(s)	1114, 1225
BseYI	CCCAGC	1 cut(s)	867
BsgI	GTGCAG	1 cut(s)	1224
BshFI	GGCC	2 cut(s)	499, 1260
BshNI	GGYRCC	2 cut(s)	226, 917
BsiHKAI	GWGCWC	3 cut(s)	118, 310, 1200
BsiHKCI	CYCGRG	1 cut(s)	1114
BsiSI	CCGG	2 cut(s)	38, 337
BslI	CCNNNNNNNGG	3 cut(s)	257, 774, 863
BsmAI	GTCTC	4 cut(s)	48, 421, 997, 1070
BsnI	GGCC	2 cut(s)	499, 1260
Bso31I	GGTCTC	1 cut(s)	997
BsoBI	CYCGRG	1 cut(s)	1114
Bsp1286I	GDGCHC	3 cut(s)	118, 310, 1200
Bsp143I	GATC	2 cut(s)	670, 1153
Bsp1720I	GCTNAGC	1 cut(s)	999
BspACI	CCGC	2 cut(s)	839, 1223
BspANI	GGCC	2 cut(s)	499, 1260
BspCNI	CTCAG	2 cut(s)	959, 991
BspHI	TCATGA	2 cut(s)	1297, 1312
BspLI	GGNNCC	2 cut(s)	228, 919
BspMI	ACCTGC	2 cut(s)	172, 905
BspT107I	GGYRCC	2 cut(s)	226, 917
BspTNI	GGTCTC	1 cut(s)	997
BsrBI	CCGCTC	1 cut(s)	839
BsrDI	GCAATG	3 cut(s)	48, 857, 1182
BsrI	ACTGG	2 cut(s)	182, 1140
BssMI	GATC	2 cut(s)	670, 1153
BssNI	GRCGYC	1 cut(s)	394
Bst2UI	CCWGG	4 cut(s)	231, 312, 561, 775
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	2 cut(s)	438, 1201
BstACI	GRCGYC	1 cut(s)	394
BstAPI	GCANNNNNTGC	1 cut(s)	1057
BstC8I	GCNNGC	6 cut(s)	6, 15, 99, 549, 1005, 1021
BstDEI	CTNAG	4 cut(s)	552, 738, 946, 999
BstF5I	GGATG	3 cut(s)	328, 517, 757
BstKTI	GATC	2 cut(s)	673, 1156
BstMAI	GTCTC	4 cut(s)	48, 421, 997, 1070
BstMBI	GATC	2 cut(s)	670, 1153
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 14, 374, 836, 911, 1004, 1057, 1220, 1244
BstNI	CCWGG	4 cut(s)	231, 312, 561, 775
BstNSI	RCATGY	4 cut(s)	101, 476, 638, 1007
BstSCI	CCNGG	5 cut(s)	36, 229, 310, 559, 773
BstSFI	CTRYAG	1 cut(s)	1254
BstSLI	GKGCMC	2 cut(s)	310, 1200
BstV1I	GCAGC	2 cut(s)	1114, 1225
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	1 cut(s)	1153
BstXI	CCANNNNNNTGG	3 cut(s)	318, 867, 928
BstYI	RGATCY	1 cut(s)	1153
BsuRI	GGCC	2 cut(s)	499, 1260
BtsCI	GGATG	3 cut(s)	328, 517, 757
BveI	ACCTGC	2 cut(s)	172, 905
Cac8I	GCNNGC	6 cut(s)	6, 15, 99, 549, 1005, 1021
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	2 cut(s)	1297, 1312
CseI	GACGC	1 cut(s)	1236
Csp6I	GTAC	2 cut(s)	516, 564
CviQI	GTAC	2 cut(s)	516, 564
DdeI	CTNAG	4 cut(s)	552, 738, 946, 999
DpnI	GATC	2 cut(s)	672, 1155
DpnII	GATC	2 cut(s)	670, 1153
Eam1104I	CTCTTC	2 cut(s)	438, 1201
EarI	CTCTTC	2 cut(s)	438, 1201
Eco31I	GGTCTC	1 cut(s)	997
Eco57I	CTGAAG	1 cut(s)	1263
Eco88I	CYCGRG	1 cut(s)	1114
EcoRII	CCWGG	4 cut(s)	229, 310, 559, 773
EcoT22I	ATGCAT	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	1103, 1224, 1239
FokI	GGATG	3 cut(s)	335, 524, 764
Fsp4HI	GCNGC	3 cut(s)	1103, 1224, 1239
FspBI	CTAG	9 cut(s)	390, 398, 614, 644, 717, 977, 1016, 1131, 1157
GluI	GCNGC	3 cut(s)	1103, 1224, 1239
GsaI	CCCAGC	1 cut(s)	871
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	2 cut(s)	499, 1260
HapII	CCGG	2 cut(s)	38, 337
HgaI	GACGC	1 cut(s)	1236
Hin1I	GRCGYC	1 cut(s)	394
HinfI	GANTC	4 cut(s)	41, 520, 556, 1264
HpaII	CCGG	2 cut(s)	38, 337
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	308, 1198
Hpy188I	TCNGA	4 cut(s)	57, 264, 484, 1191
Hpy188III	TCNNGA	9 cut(s)	80, 390, 614, 644, 909, 948, 1131, 1298, 1313
Hpy8I	GTNNAC	2 cut(s)	308, 1198
HpyAV	CCTTC	4 cut(s)	618, 722, 966, 1296
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	9 cut(s)	8, 221, 308, 403, 1023, 1060, 1198, 1214, 1241
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 14, 374, 836, 911, 1004, 1057, 1220, 1244
HpyF3I	CTNAG	4 cut(s)	552, 738, 946, 999
HpySE526I	ACGT	1 cut(s)	394
Hsp92I	GRCGYC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	670, 1153
LmnI	GCTCC	4 cut(s)	121, 135, 827, 911
Lsp1109I	GCAGC	2 cut(s)	1114, 1225
LweI	GCATC	2 cut(s)	208, 1201
MaeI	CTAG	9 cut(s)	390, 398, 614, 644, 717, 977, 1016, 1131, 1157
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	5 cut(s)	32, 593, 625, 637, 898
MalI	GATC	2 cut(s)	672, 1155
MbiI	CCGCTC	1 cut(s)	839
MboI	GATC	2 cut(s)	670, 1153
MboII	GAAGA	8 cut(s)	455, 547, 598, 648, 1163, 1218, 1269, 1286
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	1 cut(s)	1153
MhlI	GDGCHC	3 cut(s)	118, 310, 1200
MlyI	GAGTC	2 cut(s)	50, 1258
MmeI	TCCRAC	2 cut(s)	242, 489
Mph1103I	ATGCAT	1 cut(s)	223
MseI	TTAA	4 cut(s)	161, 348, 1095, 1122
MspI	CCGG	2 cut(s)	38, 337
MspR9I	CCNGG	5 cut(s)	38, 231, 312, 561, 775
MunI	CAATTG	1 cut(s)	861
MvaI	CCWGG	4 cut(s)	231, 312, 561, 775
MwoI	GCNNNNNNNGC	9 cut(s)	10, 14, 374, 836, 911, 1004, 1057, 1220, 1244
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	2 cut(s)	670, 1153
NlaIV	GGNNCC	2 cut(s)	228, 919
NmuCI	GTSAC	2 cut(s)	593, 898
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	4 cut(s)	101, 476, 638, 1007
PaeI	GCATGC	2 cut(s)	101, 1007
PagI	TCATGA	2 cut(s)	1297, 1312
PaqCI	CACCTGC	2 cut(s)	172, 905
PciI	ACATGT	1 cut(s)	634
PfeI	GAWTC	2 cut(s)	520, 556
PkrI	GCNGC	3 cut(s)	1104, 1225, 1240
PleI	GAGTC	2 cut(s)	49, 1258
PpsI	GAGTC	2 cut(s)	49, 1258
PscI	ACATGT	1 cut(s)	634
Psp6I	CCWGG	4 cut(s)	229, 310, 559, 773
PspFI	CCCAGC	1 cut(s)	867
PspGI	CCWGG	4 cut(s)	229, 310, 559, 773
PspN4I	GGNNCC	2 cut(s)	228, 919
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	1153
RsaI	GTAC	2 cut(s)	517, 565
RsaNI	GTAC	2 cut(s)	516, 564
SaqAI	TTAA	4 cut(s)	161, 348, 1095, 1122
SatI	GCNGC	3 cut(s)	1103, 1224, 1239
Sau3AI	GATC	2 cut(s)	670, 1153
SchI	GAGTC	2 cut(s)	50, 1258
ScrFI	CCNGG	5 cut(s)	38, 231, 312, 561, 775
SduI	GDGCHC	3 cut(s)	118, 310, 1200
SfaNI	GCATC	2 cut(s)	208, 1201
SfcI	CTRYAG	1 cut(s)	1254
SmlI	CTYRAG	1 cut(s)	1034
SmoI	CTYRAG	1 cut(s)	1034
SphI	GCATGC	2 cut(s)	101, 1007
SsiI	CCGC	2 cut(s)	839, 1223
SspMI	CTAG	9 cut(s)	390, 398, 614, 644, 717, 977, 1016, 1131, 1157
StyD4I	CCNGG	5 cut(s)	36, 229, 310, 559, 773
TaaI	ACNGT	1 cut(s)	289
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	2 cut(s)	104, 469
TauI	GCSGC	1 cut(s)	1226
TfiI	GAWTC	2 cut(s)	520, 556
Tru1I	TTAA	4 cut(s)	161, 348, 1095, 1122
Tru9I	TTAA	4 cut(s)	161, 348, 1095, 1122
TseFI	GTSAC	2 cut(s)	593, 898
TseI	GCWGC	2 cut(s)	1102, 1238
Tsp45I	GTSAC	2 cut(s)	593, 898
TspDTI	ATGAA	5 cut(s)	667, 833, 1164, 1286, 1329
VneI	GTGCAC	2 cut(s)	306, 1196
XapI	RAATTY	3 cut(s)	241, 540, 1081
XbaI	TCTAGA	4 cut(s)	389, 613, 643, 1130
XceI	RCATGY	4 cut(s)	101, 476, 638, 1007
XcmI	CCANNNNNNNNNTGG	1 cut(s)	126
XspI	CTAG	9 cut(s)	390, 398, 614, 644, 717, 977, 1016, 1131, 1157
ZraI	GACGTC	1 cut(s)	395
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.