Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Reverse (-)

5199085 .. 5200249

Gene Structure 1165 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG073300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCTGTTTAAACTACAATTTTGCAAAGGAGAGATCAGAATCAAAATTTGAAGTATCATTACTTATAGTGATTGGAGGCATTGCTGAAGATCTCTGTAGGCACACTGGTACTCGTCTATTCGAAGTGGTAAGATTCCTTCCAGAGTATGGGGGTGCAATACCAAAGAGATCAGAAGGGGGCGCATTTCAGGTTGAATCAAAAGTAGTCTGTCGAGCTCCTAGTCAATCAAGACATCGGTTACATACAGATGATGAATCTGATATCCCATCTTCACTAATGCAATATCATGACCAGTCTGATAATGTTGGTTGTACGCCAAGAAACTCACCAGTCGGTCATGACCACACACTTCCGCATAGAGAAATACATGAAAATGGTAAGCCAAGCACACCCTTGAGTGGGAAAAAAATTTTAGTTGCCGAGGATGATGAGCTTCTGAGCTATTTGGCTATGAGGATTCTGTTAAAGGTGGGAGCAACTATGAAGCTTTGTGAAAATGGAGGAGAAGCTCCAAATGTAATTCGCATAGATCTACTCAACCAAGGGAAACATGAATATGATTTTGTACTAATGGACTGTCAGATGCCAGAAATTGATGGATTTGAGGCAACAAGGGAGATAAGGAAGGTGGAGAAAACTCACCATGTCCGCATTTCGATCATTGCATTAATAGCTCATACACCAGGCGAGGAAACAAGAAGCATGTTGGAGGCTGGCATGGATGACTATTTGAGCAAACCCTTGGAAAAGGGTCGTCTACTTGAAACAATGGGTAGACTGGTAGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

264

Amino Acids

29.53

Weight (kDa)

5.96

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	138 - 257	4e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccI	GTMKAC	2 cut(s)	760, 778
AciI	CCGC	2 cut(s)	356, 652
AcsI	RAATTY	2 cut(s)	47, 411
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	3 cut(s)	112, 316, 570
AfiI	CCNNNNNNNGG	3 cut(s)	149, 401, 402
AgsI	TTSAA	3 cut(s)	53, 197, 767
AjnI	CCWGG	1 cut(s)	685
AluBI	AGCT	6 cut(s)	218, 436, 444, 490, 512, 677
AluI	AGCT	6 cut(s)	218, 436, 444, 490, 512, 677
Alw21I	GWGCWC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	2 cut(s)	47, 411
AseI	ATTAAT	1 cut(s)	671
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	2 cut(s)	321, 635
AsuII	TTCGAA	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	220
BarI	GAAGNNNNNNTAC	4 cut(s)	45, 77, 123, 155
Bbv12I	GWGCWC	1 cut(s)	220
BccI	CCATC	2 cut(s)	277, 593
BciT130I	CCWGG	1 cut(s)	687
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	97
BglII	AGATCT	2 cut(s)	91, 532
Bme1390I	CCNGG	1 cut(s)	687
BmrFI	CCNGG	1 cut(s)	687
BmsI	GCATC	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	40
BsaJI	CCNNGG	3 cut(s)	423, 544, 744
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 401, 402
Bse1I	ACTGG	4 cut(s)	112, 295, 332, 786
Bse3DI	GCAATG	2 cut(s)	81, 663
Bse8I	GATNNNNATC	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	3 cut(s)	423, 544, 744
BseGI	GGATG	2 cut(s)	433, 730
BseJI	GATNNNNATC	1 cut(s)	40
BseLI	CCNNNNNNNGG	3 cut(s)	149, 401, 402
BseMI	GCAATG	2 cut(s)	81, 663
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	4 cut(s)	112, 295, 332, 786
BseRI	GAGGAG	1 cut(s)	519
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	220
BslI	CCNNNNNNNGG	3 cut(s)	149, 401, 402
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	5 cut(s)	35, 91, 170, 532, 660
BspACI	CCGC	2 cut(s)	356, 652
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	432
BspHI	TCATGA	2 cut(s)	289, 340
BspT104I	TTCGAA	1 cut(s)	123
BsrDI	GCAATG	2 cut(s)	81, 663
BsrI	ACTGG	4 cut(s)	112, 295, 332, 786
BssECI	CCNNGG	3 cut(s)	423, 544, 744
BssMI	GATC	5 cut(s)	35, 91, 170, 532, 660
BssT1I	CCWWGG	2 cut(s)	544, 744
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	718
BstDEI	CTNAG	1 cut(s)	440
BstF5I	GGATG	2 cut(s)	433, 730
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	5 cut(s)	38, 94, 173, 535, 663
BstMBI	GATC	5 cut(s)	35, 91, 170, 532, 660
BstMWI	GCNNNNNNNGC	1 cut(s)	674
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	709
BstSCI	CCNGG	1 cut(s)	685
BstSFI	CTRYAG	1 cut(s)	97
BstX2I	RGATCY	2 cut(s)	91, 532
BstYI	RGATCY	2 cut(s)	91, 532
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	433, 730
BtsIMutI	CAGTG	1 cut(s)	105
Cac8I	GCNNGC	1 cut(s)	718
CciI	TCATGA	2 cut(s)	289, 340
CfoI	GCGC	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	111, 315, 569
CviAII	CATG	7 cut(s)	290, 341, 371, 554, 647, 706, 721
CviQI	GTAC	3 cut(s)	111, 315, 569
DdeI	CTNAG	1 cut(s)	440
DpnI	GATC	5 cut(s)	37, 93, 172, 534, 662
DpnII	GATC	5 cut(s)	35, 91, 170, 532, 660
DraI	TTTAAA	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	218
Eco130I	CCWWGG	2 cut(s)	544, 744
Eco24I	GRGCYC	1 cut(s)	220
Eco32I	GATATC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	108
EcoICRI	GAGCTC	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	685
EcoRV	GATATC	1 cut(s)	265
EcoT14I	CCWWGG	2 cut(s)	544, 744
EcoT38I	GRGCYC	1 cut(s)	220
ErhI	CCWWGG	2 cut(s)	544, 744
FaeI	CATG	7 cut(s)	293, 344, 374, 557, 650, 709, 724
FatI	CATG	7 cut(s)	289, 340, 370, 553, 646, 705, 720
FblI	GTMKAC	2 cut(s)	760, 778
FokI	GGATG	2 cut(s)	440, 737
FriOI	GRGCYC	1 cut(s)	220
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	7 cut(s)	293, 344, 374, 557, 650, 709, 724
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	5 cut(s)	41, 135, 197, 257, 460
HphI	GGTGA	2 cut(s)	321, 635
Hpy166II	GTNNAC	2 cut(s)	761, 779
Hpy188I	TCNGA	6 cut(s)	40, 175, 262, 301, 441, 585
Hpy188III	TCNNGA	4 cut(s)	143, 231, 290, 341
Hpy8I	GTNNAC	2 cut(s)	761, 779
HpyAV	CCTTC	3 cut(s)	149, 170, 622
HpyCH4III	ACNGT	1 cut(s)	581
HpyCH4V	TGCA	4 cut(s)	26, 158, 283, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	674
HpyF3I	CTNAG	1 cut(s)	440
Hsp92II	CATG	7 cut(s)	293, 344, 374, 557, 650, 709, 724
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	5 cut(s)	35, 91, 170, 532, 660
LmnI	GCTCC	3 cut(s)	223, 476, 517
LweI	GCATC	1 cut(s)	576
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	5 cut(s)	37, 93, 172, 534, 662
MboI	GATC	5 cut(s)	35, 91, 170, 532, 660
MboII	GAAGA	2 cut(s)	101, 264
MflI	RGATCY	2 cut(s)	91, 532
MhlI	GDGCHC	1 cut(s)	220
MluCI	AATT	5 cut(s)	19, 47, 411, 522, 594
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	7 cut(s)	71, 418, 450, 497, 601, 685, 706
MseI	TTAA	3 cut(s)	11, 467, 671
MslI	CAYNNNNRTG	3 cut(s)	249, 375, 558
MspR9I	CCNGG	1 cut(s)	687
MssI	GTTTAAAC	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	687
MwoI	GCNNNNNNNGC	1 cut(s)	674
NdeII	GATC	5 cut(s)	35, 91, 170, 532, 660
NlaIII	CATG	7 cut(s)	293, 344, 374, 557, 650, 709, 724
NmeAIII	GCCGAG	1 cut(s)	448
NspI	RCATGY	1 cut(s)	709
NspV	TTCGAA	1 cut(s)	123
PagI	TCATGA	2 cut(s)	289, 340
PfeI	GAWTC	5 cut(s)	41, 135, 197, 257, 460
PflMI	CCANNNNNTGG	1 cut(s)	149
PmeI	GTTTAAAC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	671
Psp124BI	GAGCTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	685
PsuI	RGATCY	2 cut(s)	91, 532
RsaI	GTAC	3 cut(s)	112, 316, 570
RsaNI	GTAC	3 cut(s)	111, 315, 569
RseI	CAYNNNNRTG	3 cut(s)	249, 375, 558
SacI	GAGCTC	1 cut(s)	220
SaqAI	TTAA	3 cut(s)	11, 467, 671
Sau3AI	GATC	5 cut(s)	35, 91, 170, 532, 660
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	9 cut(s)	195, 220, 438, 446, 474, 492, 514, 633, 679
SfaNI	GCATC	1 cut(s)	576
SfcI	CTRYAG	1 cut(s)	97
SfuI	TTCGAA	1 cut(s)	123
SmiMI	CAYNNNNRTG	3 cut(s)	249, 375, 558
SmlI	CTYRAG	1 cut(s)	397
SmoI	CTYRAG	1 cut(s)	397
Sse9I	AATT	5 cut(s)	19, 47, 411, 522, 594
SsiI	CCGC	2 cut(s)	356, 652
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	685
StyI	CCWWGG	2 cut(s)	544, 744
TaaI	ACNGT	1 cut(s)	581
TaqI	TCGA	3 cut(s)	123, 214, 659
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	5 cut(s)	19, 47, 411, 522, 594
TatI	WGTACW	1 cut(s)	568
TfiI	GAWTC	5 cut(s)	41, 135, 197, 257, 460
Tru1I	TTAA	3 cut(s)	11, 467, 671
Tru9I	TTAA	3 cut(s)	11, 467, 671
TscAI	CASTG	1 cut(s)	112
TspDTI	ATGAA	4 cut(s)	270, 387, 500, 570
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	149
VspI	ATTAAT	1 cut(s)	671
XapI	RAATTY	2 cut(s)	47, 411
XceI	RCATGY	1 cut(s)	709
XmiI	GTMKAC	2 cut(s)	760, 778
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.