Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

6210346 .. 6210801

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAGAATTCTGTTAAGGGAGGGAGCAACTGTGAAGCTTTGTGAAAATGGAAGAGAAGCTCTAGATATGCCAGAAATGGATGTATTTGAAGCAACAAGGGAGATAAGGAAAGTGGAGAAAGCTCGCCATGTTCGCATTCCGATCATTGCATTAACAGCTCACACACCAGGCGAGGAAACAAGAAGGATGTTGGAGGCCGGCATGGATGACTATTTGAGCAAACCCTTGGAAAAGGATCGTCTGCTTGAAACAATGGGTAGACTGGTAGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

91

Amino Acids

10.45

Weight (kDa)

6.74

Isoelectric Point (pI)

22.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	21 - 84	1.1e-11	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	259
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	6
AgsI	TTSAA	2 cut(s)	89, 248
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	4 cut(s)	37, 59, 122, 158
AluI	AGCT	4 cut(s)	37, 59, 122, 158
AlwI	GGATC	1 cut(s)	243
AoxI	GGCC	1 cut(s)	195
ApoI	RAATTY	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	168
BfaI	CTAG	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	144
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	225
BseGI	GGATG	3 cut(s)	85, 192, 211
BseMI	GCAATG	1 cut(s)	144
BseNI	ACTGG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	141, 235
BspANI	GGCC	1 cut(s)	197
BspPI	GGATC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	2 cut(s)	141, 235
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	46
BstC8I	GCNNGC	2 cut(s)	124, 199
BstF5I	GGATG	3 cut(s)	85, 192, 211
BstKTI	GATC	2 cut(s)	144, 238
BstMBI	GATC	2 cut(s)	141, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 155
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	3 cut(s)	85, 192, 211
Cac8I	GCNNGC	2 cut(s)	124, 199
Cfr10I	RCCGGY	1 cut(s)	197
CviAII	CATG	2 cut(s)	128, 202
CviJI	RGCY	5 cut(s)	37, 59, 122, 158, 197
CviKI_1	RGCY	5 cut(s)	37, 59, 122, 158, 197
DpnI	GATC	2 cut(s)	143, 237
DpnII	GATC	2 cut(s)	141, 235
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	2 cut(s)	131, 205
FaiI	YATR	3 cut(s)	68, 129, 203
FatI	CATG	2 cut(s)	127, 201
FblI	GTMKAC	1 cut(s)	259
FokI	GGATG	3 cut(s)	92, 199, 218
FspBI	CTAG	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	198
Hin1II	CATG	2 cut(s)	131, 205
HindIII	AAGCTT	1 cut(s)	35
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	1 cut(s)	141
Hpy188III	TCNNGA	1 cut(s)	62
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	177
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 155
Hsp92II	CATG	2 cut(s)	131, 205
KroI	GCCGGC	1 cut(s)	197
KroNI	GCCGGC	1 cut(s)	199
Kzo9I	GATC	2 cut(s)	141, 235
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	5 cut(s)	84, 153, 180, 211, 248
MaeI	CTAG	1 cut(s)	62
MalI	GATC	2 cut(s)	143, 237
MboI	GATC	2 cut(s)	141, 235
MboII	GAAGA	1 cut(s)	63
MluCI	AATT	1 cut(s)	6
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	3 cut(s)	13, 166, 187
MroNI	GCCGGC	1 cut(s)	197
MseI	TTAA	2 cut(s)	14, 152
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	132, 155
NaeI	GCCGGC	1 cut(s)	199
NdeII	GATC	2 cut(s)	141, 235
NgoMIV	GCCGGC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	131, 205
PctI	GAATGC	1 cut(s)	135
PdiI	GCCGGC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	14, 152
Sau3AI	GATC	2 cut(s)	141, 235
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	4 cut(s)	39, 61, 124, 160
Sse9I	AATT	1 cut(s)	6
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	31
TasI	AATT	1 cut(s)	6
Tru1I	TTAA	2 cut(s)	14, 152
Tru9I	TTAA	2 cut(s)	14, 152
XapI	RAATTY	1 cut(s)	6
XbaI	TCTAGA	1 cut(s)	61
XmiI	GTMKAC	1 cut(s)	259
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.