Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028124.1

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 782

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028124.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggcctgtataaactacaattttgcaaaggagagatcagaatcaaaatttgaagtatcattacttatagtgattgagggcattggtaatgatgatacacttcaatctttgttggtttcattgttgaccatagttcttgcttcatatctggttctctgtgttctcatttctccctattatatgggcaccatagttattgctttatatgctaggagttgttatctagctgaagatccctgtaggcacactggtactcgtctattcgaagtggtaagattccttccagagtatgggggtgcaatgccaaagagatcagaagggggcacatttcaggttgaatcaaaagtagtatgtcgagctcctagtcaatcaagacatcggttacatacagatgatgaatctgatatcccatcttcaccaatgcaatatcatgaccagtttgataatgttggttctacaccaagaaattcaccagttggtcatgatcatacacttctgcatagagaaatacatgaacatggtaagccaagcatgcacacccttgagtgggaaaaaaatttggttgctgaggatgatgaccttctgagctatttgactatgaggattttgttaaaggtgggagcaactgtgaagctttgtgaaaatagaggagaagctccagatgtaattcgcata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

225

Amino Acids

25.33

Weight (kDa)

5.66

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	1 cut(s)	290
AclWI	GGATC	1 cut(s)	227
AcsI	RAATTY	3 cut(s)	47, 466, 556
AcuI	CTGAAG	1 cut(s)	249
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	3 cut(s)	290, 546, 547
AgsI	TTSAA	3 cut(s)	53, 104, 338
AluBI	AGCT	5 cut(s)	227, 359, 588, 634, 656
AluI	AGCT	5 cut(s)	227, 359, 588, 634, 656
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	3 cut(s)	47, 466, 556
AsuHPI	GGTGA	2 cut(s)	408, 462
AsuII	TTCGAA	1 cut(s)	264
BaeGI	GKGCMC	2 cut(s)	188, 326
BanI	GGYRCC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	361
BarI	GAAGNNNNNNTAC	4 cut(s)	45, 77, 264, 296
Bbv12I	GWGCWC	1 cut(s)	361
BbvCI	CCTCAGC	1 cut(s)	567
BccI	CCATC	1 cut(s)	418
BclI	TGATCA	1 cut(s)	484
BfaI	CTAG	3 cut(s)	210, 224, 363
BfmI	CTRYAG	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	187
BpmI	CTGGAG	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	567
Bpu14I	TTCGAA	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 546, 547
Bse1I	ACTGG	3 cut(s)	253, 436, 473
Bse3DI	GCAATG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	40
BseGI	GGATG	1 cut(s)	577
BseJI	GATNNNNATC	1 cut(s)	40
BseLI	CCNNNNNNNGG	3 cut(s)	290, 546, 547
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	2 cut(s)	558, 575
BseNI	ACTGG	3 cut(s)	253, 436, 473
BseRI	GAGGAG	1 cut(s)	663
BseSI	GKGCMC	2 cut(s)	188, 326
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	361
BslI	CCNNNNNNNGG	3 cut(s)	290, 546, 547
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	264
Bsp1286I	GDGCHC	3 cut(s)	188, 326, 361
Bsp143I	GATC	4 cut(s)	35, 232, 311, 484
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	559, 576
BspHI	TCATGA	2 cut(s)	430, 481
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	264
BspT107I	GGYRCC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	3 cut(s)	253, 436, 473
BssMI	GATC	4 cut(s)	35, 232, 311, 484
Bst4CI	ACNGT	1 cut(s)	628
BstBI	TTCGAA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	533
BstDEI	CTNAG	2 cut(s)	567, 584
BstF5I	GGATG	1 cut(s)	577
BstKTI	GATC	4 cut(s)	38, 235, 314, 487
BstMBI	GATC	4 cut(s)	35, 232, 311, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	206, 532
BstNSI	RCATGY	1 cut(s)	535
BstSFI	CTRYAG	1 cut(s)	238
BstSLI	GKGCMC	2 cut(s)	188, 326
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	577
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	533
CciI	TCATGA	2 cut(s)	430, 481
Csp6I	GTAC	1 cut(s)	252
CviAII	CATG	5 cut(s)	431, 482, 512, 518, 532
CviJI	RGCY	7 cut(s)	5, 227, 359, 526, 588, 634, 656
CviKI_1	RGCY	7 cut(s)	5, 227, 359, 526, 588, 634, 656
CviQI	GTAC	1 cut(s)	252
DdeI	CTNAG	2 cut(s)	567, 584
DpnI	GATC	4 cut(s)	37, 234, 313, 486
DpnII	GATC	4 cut(s)	35, 232, 311, 484
Ecl136II	GAGCTC	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	361
Eco32I	GATATC	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	361
FaeI	CATG	5 cut(s)	434, 485, 515, 521, 535
FatI	CATG	5 cut(s)	430, 481, 511, 517, 531
FbaI	TGATCA	1 cut(s)	484
FokI	GGATG	1 cut(s)	584
FriOI	GRGCYC	1 cut(s)	361
FspBI	CTAG	3 cut(s)	210, 224, 363
GsuI	CTGGAG	1 cut(s)	642
HaeIII	GGCC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	434, 485, 515, 521, 535
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	4 cut(s)	41, 276, 338, 398
HphI	GGTGA	2 cut(s)	408, 462
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	4 cut(s)	40, 316, 403, 585
Hpy188III	TCNNGA	5 cut(s)	284, 372, 431, 482, 659
Hpy8I	GTNNAC	1 cut(s)	126
HpyAV	CCTTC	3 cut(s)	290, 311, 590
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4V	TGCA	5 cut(s)	26, 299, 424, 499, 535
HpyF10VI	GCNNNNNNNGC	2 cut(s)	206, 532
HpyF3I	CTNAG	2 cut(s)	567, 584
Hsp92II	CATG	5 cut(s)	434, 485, 515, 521, 535
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	35, 232, 311, 484
LmnI	GCTCC	3 cut(s)	364, 620, 661
LpnPI	CCDG	8 cut(s)	19, 134, 234, 250, 297, 317, 449, 486
MaeI	CTAG	3 cut(s)	210, 224, 363
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	4 cut(s)	37, 234, 313, 486
MboI	GATC	4 cut(s)	35, 232, 311, 484
MboII	GAAGA	2 cut(s)	242, 405
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	188, 326, 361
MluCI	AATT	5 cut(s)	19, 47, 466, 556, 666
MnlI	CCTC	4 cut(s)	70, 562, 594, 641
MseI	TTAA	1 cut(s)	611
MslI	CAYNNNNRTG	2 cut(s)	390, 516
MwoI	GCNNNNNNNGC	2 cut(s)	206, 532
NdeII	GATC	4 cut(s)	35, 232, 311, 484
NlaIII	CATG	5 cut(s)	434, 485, 515, 521, 535
NlaIV	GGNNCC	1 cut(s)	187
NspI	RCATGY	1 cut(s)	535
NspV	TTCGAA	1 cut(s)	264
PaeI	GCATGC	1 cut(s)	535
PagI	TCATGA	2 cut(s)	430, 481
PfeI	GAWTC	4 cut(s)	41, 276, 338, 398
PflMI	CCANNNNNTGG	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	2 cut(s)	390, 516
SacI	GAGCTC	1 cut(s)	361
SaqAI	TTAA	1 cut(s)	611
Sau3AI	GATC	4 cut(s)	35, 232, 311, 484
SduI	GDGCHC	3 cut(s)	188, 326, 361
SetI	ASST	8 cut(s)	229, 336, 361, 582, 590, 618, 636, 658
SfcI	CTRYAG	1 cut(s)	238
SfuI	TTCGAA	1 cut(s)	264
SmiMI	CAYNNNNRTG	2 cut(s)	390, 516
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SphI	GCATGC	1 cut(s)	535
Sse9I	AATT	5 cut(s)	19, 47, 466, 556, 666
SspMI	CTAG	3 cut(s)	210, 224, 363
SstI	GAGCTC	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	628
TaqI	TCGA	2 cut(s)	264, 355
TasI	AATT	5 cut(s)	19, 47, 466, 556, 666
TfiI	GAWTC	4 cut(s)	41, 276, 338, 398
Tru1I	TTAA	1 cut(s)	611
Tru9I	TTAA	1 cut(s)	611
TscAI	CASTG	1 cut(s)	253
TspDTI	ATGAA	4 cut(s)	108, 132, 411, 528
TspRI	CASTG	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	290
XapI	RAATTY	3 cut(s)	47, 466, 556
XceI	RCATGY	1 cut(s)	535
XspI	CTAG	3 cut(s)	210, 224, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.