Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

8220999 .. 8221617

Gene Structure 619 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG097000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCAATATCATGACCAGTCTGATAATGTTGGTTCTACGCCAAGAAATTCACCAGTTGGTCATGACCATACACTTCTGCATAGAGAAATACATGAACATGGTAAGCCAAGCATGCACACCCTTGAGTGGGAAAAAAATTTGGTTGCTGAGGATGATGACCTTCTGAGCTATTTGGCTATGAGGATTCTGTTAAAGGTGAGAGCAACTGTGAAGCTTTGTGAAAATGGAGGAGAAGCTCCAGATTCTTGTGTACATGTGTCAGTGAGTGACTTTGGTGTTGAAATTAACATGCTGATGCCAGAAATGGATGGATTTGAGGCAACAAGGGAGATAAGGAAAGTGGAGAAAATTCACCATATTAGCATTCCGATCATTGCATTAACAGCTCATACACCAGGCGAGGAAACAAGAAGGATGTTGGAGGCTGGCATGGATGACTATTTGAGCAAACCCTTGGAAAAGGGTTGTCTACTTGAAACAATGGGTAGACTGGTGGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

167

Amino Acids

18.79

Weight (kDa)

5.5

Isoelectric Point (pI)

31.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	47 - 159	1.1e-14	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	469, 487
AcsI	RAATTY	3 cut(s)	46, 136, 348
AfaI	GTAC	1 cut(s)	252
AfiI	CCNNNNNNNGG	2 cut(s)	126, 127
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	281, 476
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	4 cut(s)	168, 214, 236, 386
AluI	AGCT	4 cut(s)	168, 214, 236, 386
ApoI	RAATTY	3 cut(s)	46, 136, 348
AsuHPI	GGTGA	3 cut(s)	42, 208, 344
BbvCI	CCTCAGC	1 cut(s)	147
BccI	CCATC	1 cut(s)	302
BciT130I	CCWGG	1 cut(s)	396
Bme1390I	CCNGG	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	453
Bsc4I	CCNNNNNNNGG	2 cut(s)	126, 127
Bse1I	ACTGG	3 cut(s)	16, 53, 495
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	453
BseGI	GGATG	4 cut(s)	157, 313, 420, 439
BseLI	CCNNNNNNNGG	2 cut(s)	126, 127
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	2 cut(s)	138, 155
BseNI	ACTGG	3 cut(s)	16, 53, 495
BseRI	GAGGAG	1 cut(s)	243
BslI	CCNNNNNNNGG	2 cut(s)	126, 127
BsmI	GAATGC	1 cut(s)	363
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	369
BspCNI	CTCAG	2 cut(s)	139, 156
BspHI	TCATGA	2 cut(s)	10, 61
BsrDI	GCAATG	1 cut(s)	372
BsrGI	TGTACA	1 cut(s)	250
BsrI	ACTGG	3 cut(s)	16, 53, 495
BssECI	CCNNGG	1 cut(s)	453
BssMI	GATC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	453
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	208
BstAUI	TGTACA	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	113, 427
BstDEI	CTNAG	2 cut(s)	147, 164
BstF5I	GGATG	4 cut(s)	157, 313, 420, 439
BstKTI	GATC	1 cut(s)	372
BstMBI	GATC	1 cut(s)	369
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 383
BstNI	CCWGG	1 cut(s)	396
BstNSI	RCATGY	3 cut(s)	115, 257, 292
BstSCI	CCNGG	1 cut(s)	394
BtsCI	GGATG	4 cut(s)	157, 313, 420, 439
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	2 cut(s)	113, 427
CciI	TCATGA	2 cut(s)	10, 61
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	8 cut(s)	11, 62, 92, 98, 112, 254, 289, 430
CviJI	RGCY	7 cut(s)	106, 168, 176, 214, 236, 386, 425
CviKI_1	RGCY	7 cut(s)	106, 168, 176, 214, 236, 386, 425
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	2 cut(s)	147, 164
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
Eco130I	CCWWGG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	394
EcoT14I	CCWWGG	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	453
FaeI	CATG	8 cut(s)	14, 65, 95, 101, 115, 257, 292, 433
FatI	CATG	8 cut(s)	10, 61, 91, 97, 111, 253, 288, 429
FblI	GTMKAC	2 cut(s)	469, 487
FokI	GGATG	4 cut(s)	164, 320, 427, 446
GsuI	CTGGAG	1 cut(s)	222
Hin1II	CATG	8 cut(s)	14, 65, 95, 101, 115, 257, 292, 433
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	184, 242
HphI	GGTGA	3 cut(s)	42, 208, 344
Hpy166II	GTNNAC	3 cut(s)	251, 470, 488
Hpy188I	TCNGA	3 cut(s)	22, 165, 369
Hpy188III	TCNNGA	3 cut(s)	11, 62, 239
Hpy8I	GTNNAC	3 cut(s)	251, 470, 488
HpyAV	CCTTC	2 cut(s)	170, 405
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4V	TGCA	4 cut(s)	4, 79, 115, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 383
HpyF3I	CTNAG	2 cut(s)	147, 164
Hsp92II	CATG	8 cut(s)	14, 65, 95, 101, 115, 257, 292, 433
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	241
LpnPI	CCDG	8 cut(s)	29, 66, 252, 312, 381, 408, 411, 476
LweI	GCATC	1 cut(s)	285
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MluCI	AATT	4 cut(s)	46, 136, 282, 348
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	6 cut(s)	142, 174, 221, 310, 394, 415
MseI	TTAA	3 cut(s)	191, 285, 380
MslI	CAYNNNNRTG	2 cut(s)	96, 293
MspR9I	CCNGG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	112, 383
NdeII	GATC	1 cut(s)	369
NlaIII	CATG	8 cut(s)	14, 65, 95, 101, 115, 257, 292, 433
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	3 cut(s)	115, 257, 292
PaeI	GCATGC	1 cut(s)	115
PagI	TCATGA	2 cut(s)	10, 61
PciI	ACATGT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	184, 242
PscI	ACATGT	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
RseI	CAYNNNNRTG	2 cut(s)	96, 293
SaqAI	TTAA	3 cut(s)	191, 285, 380
Sau3AI	GATC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	396
SetI	ASST	6 cut(s)	162, 170, 198, 216, 238, 388
SfaNI	GCATC	1 cut(s)	285
SmiMI	CAYNNNNRTG	2 cut(s)	96, 293
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
SphI	GCATGC	1 cut(s)	115
Sse9I	AATT	4 cut(s)	46, 136, 282, 348
StyD4I	CCNGG	1 cut(s)	394
StyI	CCWWGG	1 cut(s)	453
TaaI	ACNGT	1 cut(s)	208
TasI	AATT	4 cut(s)	46, 136, 282, 348
TatI	WGTACW	1 cut(s)	250
TfiI	GAWTC	2 cut(s)	184, 242
Tru1I	TTAA	3 cut(s)	191, 285, 380
Tru9I	TTAA	3 cut(s)	191, 285, 380
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	267
XapI	RAATTY	3 cut(s)	46, 136, 348
XceI	RCATGY	3 cut(s)	115, 257, 292
XmiI	GTMKAC	2 cut(s)	469, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.