Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Reverse (-)

5199085 .. 5201384

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGCTGTTCTGCGTTGACGAGGCAGCGCTGTGCTTTGATGTCCTTAACCTCTTCATGATGACAGTGAGGGATGCTCTAAACTCTGCCTTCGATGAGAAAATGTATGCCGATCTAAAAGTGTTTTTGATGGTTGAAGAGGTTGGGCAGTATCAATGTGCTTACAAGATAACAGAGGACTTCTGGATAAGTATGGCCTTGAGAGGGTTCTCAATACCTCAATCACAAAGGCACACTGGTACTCGTCTATTCGAAGTGGTAAGATTCCTTCCAGAGTATGGGGGTGCAATACCAAAGAGATCAGAAGGGGGCGCATTTCAGGTTGAATCAAAAGTAGTCTGTCGAGCTCCTAGTCAATCAAGACATCGGTTACATACAGATGATGAATCTGATATCCCATCTTCACTAATGCAATATCATGACCAGTCTGATAATGTTGGTTGTACGCCAAGAAACTCACCAGTCGGTCATGACCACACACTTCCGCATAGAGAAATACATGAAAATGGTAAGCCAAGCACACCCTTGAGTGGGAAAAAAATTTTAGTTGCCGAGGATGATGAGCTTCTGAGCTATTTGGCTATGAGGATTCTGTTAAAGGTGGGAGCAACTATGAAGCTTTGTGAAAATGGAGGAGAAGCTCCAAATGTAATTCGCATAGATCTACTCAACCAAGGGAAACATGAATATGATTTTGTACTAATGGACTGTCAGATGCCAGAAATTGATGGATTTGAGGCAACAAGGGAGATAAGGAAGGTGGAGAAAACTCACCATGTCCGCATTTCGATCATTGCATTAATAGCTCATACACCAGGCGAGGAAACAAGAAGCATGTTGGAGGCTGGCATGGATGACTATTTGAGCAAACCCTTGGAAAAGGGTCGTCTACTTGAAACAATGGGTAGACTGGTAGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

306

Amino Acids

34.56

Weight (kDa)

5.57

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	180 - 299	5.7e-18	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	275
AccI	GTMKAC	2 cut(s)	886, 904
AciI	CCGC	2 cut(s)	482, 778
AcsI	RAATTY	1 cut(s)	537
AfaI	GTAC	3 cut(s)	238, 442, 696
AfeI	AGCGCT	1 cut(s)	27
AfiI	CCNNNNNNNGG	4 cut(s)	201, 275, 527, 528
AgsI	TTSAA	3 cut(s)	134, 323, 893
AjnI	CCWGG	1 cut(s)	811
AluBI	AGCT	6 cut(s)	344, 562, 570, 616, 638, 803
AluI	AGCT	6 cut(s)	344, 562, 570, 616, 638, 803
Alw21I	GWGCWC	1 cut(s)	346
Aor51HI	AGCGCT	1 cut(s)	27
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	23
ApoI	RAATTY	1 cut(s)	537
AseI	ATTAAT	1 cut(s)	797
AspLEI	GCGC	2 cut(s)	28, 311
AsuHPI	GGTGA	2 cut(s)	447, 761
AsuII	TTCGAA	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	346
BarI	GAAGNNNNNNTAC	2 cut(s)	249, 281
Bbv12I	GWGCWC	1 cut(s)	346
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	3 cut(s)	121, 403, 719
BciT130I	CCWGG	1 cut(s)	813
BfaI	CTAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	29
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	813
BmrFI	CCNGG	1 cut(s)	813
BmsI	GCATC	2 cut(s)	61, 702
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
Bpu14I	TTCGAA	1 cut(s)	249
BpuEI	CTTGAG	2 cut(s)	217, 544
BsaJI	CCNNGG	3 cut(s)	549, 670, 870
Bsc4I	CCNNNNNNNGG	4 cut(s)	201, 275, 527, 528
Bse1I	ACTGG	4 cut(s)	238, 421, 458, 912
Bse3DI	GCAATG	1 cut(s)	789
BseBI	CCWGG	1 cut(s)	813
BseDI	CCNNGG	3 cut(s)	549, 670, 870
BseGI	GGATG	3 cut(s)	76, 559, 856
BseLI	CCNNNNNNNGG	4 cut(s)	201, 275, 527, 528
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	4 cut(s)	238, 421, 458, 912
BseRI	GAGGAG	1 cut(s)	645
BseXI	GCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	346
BslI	CCNNNNNNNGG	4 cut(s)	201, 275, 527, 528
BsnI	GGCC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp143I	GATC	4 cut(s)	109, 296, 658, 786
BspACI	CCGC	2 cut(s)	482, 778
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	558
BspHI	TCATGA	3 cut(s)	54, 415, 466
BspT104I	TTCGAA	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	789
BsrI	ACTGG	4 cut(s)	238, 421, 458, 912
BssECI	CCNNGG	3 cut(s)	549, 670, 870
BssMI	GATC	4 cut(s)	109, 296, 658, 786
BssT1I	CCWWGG	2 cut(s)	670, 870
Bst2UI	CCWGG	1 cut(s)	813
Bst4CI	ACNGT	2 cut(s)	64, 707
Bst6I	CTCTTC	2 cut(s)	56, 129
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	844
BstDEI	CTNAG	1 cut(s)	566
BstF5I	GGATG	3 cut(s)	76, 559, 856
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	2 cut(s)	28, 311
BstKTI	GATC	4 cut(s)	112, 299, 661, 789
BstMBI	GATC	4 cut(s)	109, 296, 658, 786
BstMWI	GCNNNNNNNGC	1 cut(s)	800
BstNI	CCWGG	1 cut(s)	813
BstNSI	RCATGY	1 cut(s)	835
BstSCI	CCNGG	1 cut(s)	811
BstV1I	GCAGC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	3 cut(s)	76, 559, 856
BtsIMutI	CAGTG	2 cut(s)	69, 231
Cac8I	GCNNGC	1 cut(s)	844
CciI	TCATGA	3 cut(s)	54, 415, 466
CfoI	GCGC	2 cut(s)	28, 311
Csp6I	GTAC	3 cut(s)	237, 441, 695
CviAII	CATG	8 cut(s)	55, 416, 467, 497, 680, 773, 832, 847
CviQI	GTAC	3 cut(s)	237, 441, 695
DdeI	CTNAG	1 cut(s)	566
DpnI	GATC	4 cut(s)	111, 298, 660, 788
DpnII	GATC	4 cut(s)	109, 296, 658, 786
Eam1104I	CTCTTC	2 cut(s)	56, 129
EarI	CTCTTC	2 cut(s)	56, 129
Ecl136II	GAGCTC	1 cut(s)	344
Eco130I	CCWWGG	2 cut(s)	670, 870
Eco24I	GRGCYC	1 cut(s)	346
Eco32I	GATATC	1 cut(s)	391
Eco47III	AGCGCT	1 cut(s)	27
Eco53kI	GAGCTC	1 cut(s)	344
EcoICRI	GAGCTC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	811
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	670, 870
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	2 cut(s)	670, 870
FaeI	CATG	8 cut(s)	58, 419, 470, 500, 683, 776, 835, 850
FatI	CATG	8 cut(s)	54, 415, 466, 496, 679, 772, 831, 846
FblI	GTMKAC	2 cut(s)	886, 904
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	3 cut(s)	83, 566, 863
FriOI	GRGCYC	1 cut(s)	346
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	2 cut(s)	27, 310
GluI	GCNGC	1 cut(s)	24
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	194
HhaI	GCGC	2 cut(s)	28, 311
Hin1II	CATG	8 cut(s)	58, 419, 470, 500, 683, 776, 835, 850
Hin6I	GCGC	2 cut(s)	26, 309
HinP1I	GCGC	2 cut(s)	26, 309
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	4 cut(s)	261, 323, 383, 586
HphI	GGTGA	2 cut(s)	447, 761
Hpy166II	GTNNAC	3 cut(s)	16, 887, 905
Hpy188I	TCNGA	5 cut(s)	301, 388, 427, 567, 711
Hpy188III	TCNNGA	6 cut(s)	55, 181, 269, 357, 416, 467
Hpy8I	GTNNAC	3 cut(s)	16, 887, 905
HpyAV	CCTTC	4 cut(s)	97, 275, 296, 748
HpyCH4III	ACNGT	2 cut(s)	64, 707
HpyCH4V	TGCA	3 cut(s)	284, 409, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	800
HpyF3I	CTNAG	1 cut(s)	566
Hsp92II	CATG	8 cut(s)	58, 419, 470, 500, 683, 776, 835, 850
HspAI	GCGC	2 cut(s)	26, 309
Kzo9I	GATC	4 cut(s)	109, 296, 658, 786
LmnI	GCTCC	3 cut(s)	349, 602, 643
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	2 cut(s)	61, 702
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	366
MalI	GATC	4 cut(s)	111, 298, 660, 788
MboI	GATC	4 cut(s)	109, 296, 658, 786
MboII	GAAGA	3 cut(s)	43, 146, 390
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	1 cut(s)	346
MluCI	AATT	3 cut(s)	537, 648, 720
MmeI	TCCRAC	1 cut(s)	816
MseI	TTAA	3 cut(s)	45, 593, 797
MslI	CAYNNNNRTG	3 cut(s)	375, 501, 684
MspR9I	CCNGG	1 cut(s)	813
MvaI	CCWGG	1 cut(s)	813
MwoI	GCNNNNNNNGC	1 cut(s)	800
NdeII	GATC	4 cut(s)	109, 296, 658, 786
NlaIII	CATG	8 cut(s)	58, 419, 470, 500, 683, 776, 835, 850
NmeAIII	GCCGAG	1 cut(s)	574
NspI	RCATGY	1 cut(s)	835
NspV	TTCGAA	1 cut(s)	249
PagI	TCATGA	3 cut(s)	54, 415, 466
PfeI	GAWTC	4 cut(s)	261, 323, 383, 586
PflMI	CCANNNNNTGG	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	25
PshBI	ATTAAT	1 cut(s)	797
Psp124BI	GAGCTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	811
PspGI	CCWGG	1 cut(s)	811
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	3 cut(s)	238, 442, 696
RsaNI	GTAC	3 cut(s)	237, 441, 695
RseI	CAYNNNNRTG	3 cut(s)	375, 501, 684
SacI	GAGCTC	1 cut(s)	346
SaqAI	TTAA	3 cut(s)	45, 593, 797
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	4 cut(s)	109, 296, 658, 786
ScrFI	CCNGG	1 cut(s)	813
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	2 cut(s)	61, 702
SfuI	TTCGAA	1 cut(s)	249
SmiMI	CAYNNNNRTG	3 cut(s)	375, 501, 684
SmlI	CTYRAG	2 cut(s)	196, 523
SmoI	CTYRAG	2 cut(s)	196, 523
Sse9I	AATT	3 cut(s)	537, 648, 720
SsiI	CCGC	2 cut(s)	482, 778
SspMI	CTAG	1 cut(s)	348
SstI	GAGCTC	1 cut(s)	346
StyD4I	CCNGG	1 cut(s)	811
StyI	CCWWGG	2 cut(s)	670, 870
TaaI	ACNGT	2 cut(s)	64, 707
TaqI	TCGA	4 cut(s)	90, 249, 340, 785
TaqII	GACCGA	1 cut(s)	452
TasI	AATT	3 cut(s)	537, 648, 720
TatI	WGTACW	1 cut(s)	694
TfiI	GAWTC	4 cut(s)	261, 323, 383, 586
Tru1I	TTAA	3 cut(s)	45, 593, 797
Tru9I	TTAA	3 cut(s)	45, 593, 797
TscAI	CASTG	2 cut(s)	69, 238
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	5 cut(s)	43, 396, 513, 626, 696
TspRI	CASTG	2 cut(s)	69, 238
Van91I	CCANNNNNTGG	1 cut(s)	275
VspI	ATTAAT	1 cut(s)	797
XapI	RAATTY	1 cut(s)	537
XceI	RCATGY	1 cut(s)	835
XmiI	GTMKAC	2 cut(s)	886, 904
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.