Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

630044 .. 630555

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG004800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGATGGATTTGAAGTAACAAGGCAGATAAGGAAAGTGGAGAAATTTTACCATATTTGCTTTCGGATCATTGCATTAACAGCTCATACACCAGGCGAGGAAACAAGAAGGATGTTGGAGGCCGGCATGGATGACTATTTAAGCAAAGCCTTTGGAAAAGGACCGTCTACTCGAAACAATGGGTTGACTGGTACGGAGTTAGTAAAATTGTTGGAAGCTGCAATCATGATTGTCAGAGAACAAAAGAAAAGAAAAAAGCAAACAGAGCTTTTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

92

Amino Acids

10.62

Weight (kDa)

9.61

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	1 - 53	1.8e-07	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	44
AfaI	GTAC	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	14
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	3 cut(s)	83, 218, 268
AluI	AGCT	3 cut(s)	83, 218, 268
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	93
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	93
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmrFI	CCNGG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	93
BseGI	GGATG	3 cut(s)	10, 117, 136
BseMI	GCAATG	1 cut(s)	69
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	123
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	66
BspANI	GGCC	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	225
BspPI	GGATC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	69
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	122
BssMI	GATC	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	93
Bst4CI	ACNGT	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	124
BstF5I	GGATG	3 cut(s)	10, 117, 136
BstKTI	GATC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 265
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	3 cut(s)	10, 117, 136
Cac8I	GCNNGC	1 cut(s)	124
CciI	TCATGA	1 cut(s)	225
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	192
CviAII	CATG	3 cut(s)	127, 226, 274
CviJI	RGCY	5 cut(s)	83, 122, 149, 218, 268
CviKI_1	RGCY	5 cut(s)	83, 122, 149, 218, 268
CviQI	GTAC	1 cut(s)	192
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	91
FaeI	CATG	3 cut(s)	130, 229, 277
FaiI	YATR	5 cut(s)	54, 87, 128, 227, 275
FatI	CATG	3 cut(s)	126, 225, 273
FblI	GTMKAC	1 cut(s)	167
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	3 cut(s)	17, 124, 143
Fsp4HI	GCNGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	3 cut(s)	130, 229, 277
HincII	GTYRAC	1 cut(s)	186
HindII	GTYRAC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	2 cut(s)	168, 186
Hpy188I	TCNGA	2 cut(s)	66, 236
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	2 cut(s)	168, 186
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	2 cut(s)	74, 221
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 265
Hsp92II	CATG	3 cut(s)	130, 229, 277
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	66
LpnPI	CCDG	4 cut(s)	78, 105, 136, 174
Lsp1109I	GCAGC	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MluCI	AATT	2 cut(s)	44, 206
MmeI	TCCRAC	2 cut(s)	96, 192
MnlI	CCTC	2 cut(s)	91, 112
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	2 cut(s)	77, 140
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	2 cut(s)	80, 265
NaeI	GCCGGC	1 cut(s)	124
NdeII	GATC	1 cut(s)	66
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	3 cut(s)	130, 229, 277
PagI	TCATGA	1 cut(s)	225
PdiI	GCCGGC	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	161
RsaI	GTAC	1 cut(s)	193
RsaNI	GTAC	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	77, 140
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	3 cut(s)	85, 220, 270
SinI	GGWCC	1 cut(s)	161
Sse9I	AATT	2 cut(s)	44, 206
StyD4I	CCNGG	1 cut(s)	91
TaaI	ACNGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	172
TasI	AATT	2 cut(s)	44, 206
Tru1I	TTAA	2 cut(s)	77, 140
Tru9I	TTAA	2 cut(s)	77, 140
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	262
TspGWI	ACGGA	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.