Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

34041264 .. 34044930

Gene Structure 3667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0235800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAGCTCCTGGGACAACTGGGTCGAACACTCCCTTGACAAACTTGAACGCCTGCAACTCCTCCGGTCTCTCCGACCCATCTACCTCCGCAATGAACCACAAAAACCCACCACCACCGTCGAAGATGACGACCTCCAAGTCTTCCACCAAATGCAGCTCTGGGACCGTTCCTCCGTGGAGGTCCACATTCCCGAATCAACGTTCCATAAATGGCTCAGTGACATCCCCAGTTCCGGGGAGGAGGAAGATACCCGGGAATTCAGAAAGCTGTTGTTGTTCTCTGGAAATGATTATCTGGGCTTGAGTTCACATCCCACCATTGGAAATGCTGCTGCTAAGGATTGCCTTCTTTGTCCTAAAGGGTTTGCAGCCAATATGGCCTTGATGGTAGTGTTGGGAAATGTTGGCTCTCTCTTGGCTGCTGGAAAAACTCCTTTAACTAATGAAAAGATTGCCATTTTTTCTGATGAACTGAACCATGCATCGATAATTGATGGTATTCGTCTTGCTGAACGACAAAAATCTGTAGAGATATTCATCTATAGACATTGTGACATGATTCACCTTAAGGCATTGTTATCCAGTTGCACAATGCGGAAGAAAGTTGTTGTGACTGATAGCTTGTTTAGTATGGATGGAGACTTTGCGCCAATGACCGAGCTGGTGAAGCTACGCAAGCAGCATGACTTTCTGTTAGTCATTGATGATGCTTACGGAACCTTTGTTTGCGGCAAAAATGGTGGTGGAGTGGCTGAGGAATTCCATTGTGAAAGAGATGTTGACATATGTGTTGGCACTTTGAGTAAGGCTGCAGGTTGCCATGGTGGGTTCATTGCATGCTGGAGTTTGTTGGAACCGGGTTTCCATGTGACTGCAATCAGACCCCCAACGGTGCCGCCCAACTCATGCAGGCTACGAGTGACTTTGAGTGCAACACACACAAGGGCTGATATTGAGAGGTTCACAACTGCACTCTCCAATTGTGTAAATTTCCAAGAAATCGGCATCCATGGCTCCAATGGATATGCAAGGCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

345

Amino Acids

38.42

Weight (kDa)

5.96

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	129 - 280	6.5e-23	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	20, 137
Acc36I	ACCTGC	1 cut(s)	803
AccB1I	GGYRCC	1 cut(s)	892
AciI	CCGC	4 cut(s)	88, 595, 729, 896
AclI	AACGTT	1 cut(s)	200
AcsI	RAATTY	3 cut(s)	257, 758, 988
AfiI	CCNNNNNNNGG	3 cut(s)	233, 234, 320
AflII	CTTAAG	1 cut(s)	566
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	8
AloI	GAACNNNNNNTCC	2 cut(s)	846, 878
AluBI	AGCT	6 cut(s)	6, 157, 268, 621, 661, 670
AluI	AGCT	6 cut(s)	6, 157, 268, 621, 661, 670
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	72, 633
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	7 cut(s)	154, 329, 332, 368, 419, 679, 809
ApoI	RAATTY	3 cut(s)	257, 758, 988
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	2 cut(s)	163, 181
AsuC2I	CCSGG	4 cut(s)	235, 253, 254, 858
AsuHPI	GGTGA	2 cut(s)	554, 676
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	2 cut(s)	163, 181
BanI	GGYRCC	1 cut(s)	892
BanII	GRGCYC	1 cut(s)	8
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	753
BbvI	GCAGC	7 cut(s)	166, 316, 319, 380, 406, 691, 796
BccI	CCATC	4 cut(s)	86, 379, 488, 629
BciT130I	CCWGG	1 cut(s)	10
BcnI	CCSGG	4 cut(s)	235, 253, 254, 858
BcoDI	GTCTC	2 cut(s)	72, 633
BfmI	CTRYAG	3 cut(s)	525, 541, 810
BfrI	CTTAAG	1 cut(s)	566
BfuAI	ACCTGC	1 cut(s)	803
BglI	GCCNNNNNGGC	1 cut(s)	377
BisI	GCNGC	9 cut(s)	155, 330, 333, 369, 420, 680, 730, 810, 896
BlsI	GCNGC	9 cut(s)	156, 331, 334, 370, 421, 681, 731, 811, 897
Bme1390I	CCNGG	5 cut(s)	10, 235, 253, 254, 858
Bme18I	GGWCC	2 cut(s)	163, 181
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	163, 181
BmiI	GGNNCC	5 cut(s)	164, 718, 855, 894, 1015
BmrFI	CCNGG	5 cut(s)	10, 235, 253, 254, 858
BmrI	ACTGGG	2 cut(s)	28, 222
BmsI	GCATC	3 cut(s)	491, 697, 1014
BmuI	ACTGGG	2 cut(s)	28, 222
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	862
Bpu10I	CCTNAGC	2 cut(s)	336, 753
BpuEI	CTTGAG	1 cut(s)	322
BpuMI	CCSGG	4 cut(s)	235, 253, 254, 858
Bsa29I	ATCGAT	1 cut(s)	485
BsaBI	GATNNNNATC	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	6 cut(s)	9, 174, 234, 252, 820, 1009
BsaWI	WCCGGW	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 234, 320
Bse1I	ACTGG	3 cut(s)	23, 228, 582
Bse3DI	GCAATG	2 cut(s)	97, 831
Bse8I	GATNNNNATC	1 cut(s)	536
BseBI	CCWGG	1 cut(s)	10
BseCI	ATCGAT	1 cut(s)	485
BseDI	CCNNGG	6 cut(s)	9, 174, 234, 252, 820, 1009
BseGI	GGATG	4 cut(s)	222, 310, 640, 1005
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	3 cut(s)	233, 234, 320
BseMI	GCAATG	2 cut(s)	97, 831
BseMII	CTCAG	2 cut(s)	229, 744
BseNI	ACTGG	3 cut(s)	23, 228, 582
BseRI	GAGGAG	2 cut(s)	50, 254
BseXI	GCAGC	7 cut(s)	166, 316, 319, 380, 406, 691, 796
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	1 cut(s)	380
BshNI	GGYRCC	1 cut(s)	892
BshVI	ATCGAT	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	4 cut(s)	64, 234, 253, 857
BslFI	GGGAC	2 cut(s)	26, 176
BslI	CCNNNNNNNGG	3 cut(s)	233, 234, 320
BsmAI	GTCTC	2 cut(s)	72, 633
BsmFI	GGGAC	2 cut(s)	26, 176
BsnI	GGCC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp19I	CCATGG	2 cut(s)	820, 1009
BspACI	CCGC	4 cut(s)	88, 595, 729, 896
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	2 cut(s)	228, 745
BspDI	ATCGAT	1 cut(s)	485
BspLI	GGNNCC	5 cut(s)	164, 718, 855, 894, 1015
BspMAI	CTGCAG	1 cut(s)	814
BspMI	ACCTGC	1 cut(s)	803
BspT107I	GGYRCC	1 cut(s)	892
BspTI	CTTAAG	1 cut(s)	566
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	2 cut(s)	97, 831
BsrI	ACTGG	3 cut(s)	23, 228, 582
BssECI	CCNNGG	6 cut(s)	9, 174, 234, 252, 820, 1009
BssT1I	CCWWGG	2 cut(s)	820, 1009
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	3 cut(s)	118, 167, 892
BstAFI	CTTAAG	1 cut(s)	566
BstC8I	GCNNGC	4 cut(s)	53, 677, 838, 911
BstDEI	CTNAG	3 cut(s)	215, 336, 753
BstDSI	CCRYGG	3 cut(s)	174, 820, 1009
BstF5I	GGATG	4 cut(s)	222, 310, 640, 1005
BstHHI	GCGC	1 cut(s)	649
BstMAI	GTCTC	2 cut(s)	72, 633
BstMWI	GCNNNNNNNGC	4 cut(s)	377, 667, 676, 1011
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	840
BstSCI	CCNGG	5 cut(s)	8, 233, 251, 252, 856
BstSFI	CTRYAG	3 cut(s)	525, 541, 810
BstV1I	GCAGC	7 cut(s)	166, 316, 319, 380, 406, 691, 796
BstV2I	GAAGAC	1 cut(s)	133
Bsu15I	ATCGAT	1 cut(s)	485
BsuRI	GGCC	1 cut(s)	380
BsuTUI	ATCGAT	1 cut(s)	485
BtgI	CCRYGG	3 cut(s)	174, 820, 1009
BtsCI	GGATG	4 cut(s)	222, 310, 640, 1005
BtsIMutI	CAGTG	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	803
Cac8I	GCNNGC	4 cut(s)	53, 677, 838, 911
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	2 cut(s)	163, 181
Cfr9I	CCCGGG	1 cut(s)	252
ClaI	ATCGAT	1 cut(s)	485
CspCI	CAANNNNNGTGG	2 cut(s)	721, 756
CviAII	CATG	8 cut(s)	479, 556, 683, 821, 837, 866, 906, 1010
DdeI	CTNAG	3 cut(s)	215, 336, 753
DrdI	GACNNNNNNGTC	2 cut(s)	20, 137
DseDI	GACNNNNNNGTC	2 cut(s)	20, 137
Ecl136II	GAGCTC	1 cut(s)	6
Eco130I	CCWWGG	2 cut(s)	820, 1009
Eco24I	GRGCYC	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	72
Eco47I	GGWCC	2 cut(s)	163, 181
Eco53kI	GAGCTC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	6
EcoRI	GAATTC	2 cut(s)	257, 758
EcoRII	CCWGG	1 cut(s)	8
EcoT14I	CCWWGG	2 cut(s)	820, 1009
EcoT22I	ATGCAT	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	2 cut(s)	820, 1009
FaeI	CATG	8 cut(s)	482, 559, 686, 824, 840, 869, 909, 1013
FaqI	GGGAC	2 cut(s)	26, 176
FatI	CATG	8 cut(s)	478, 555, 682, 820, 836, 865, 905, 1009
FauNDI	CATATG	1 cut(s)	785
Fnu4HI	GCNGC	9 cut(s)	155, 330, 333, 369, 420, 680, 730, 810, 896
FokI	GGATG	4 cut(s)	209, 297, 647, 992
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	9 cut(s)	155, 330, 333, 369, 420, 680, 730, 810, 896
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	9 cut(s)	155, 330, 333, 369, 420, 680, 730, 810, 896
GsuI	CTGGAG	1 cut(s)	862
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	4 cut(s)	64, 234, 253, 857
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	8 cut(s)	482, 559, 686, 824, 840, 869, 909, 1013
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HincII	GTYRAC	1 cut(s)	781
HindII	GTYRAC	1 cut(s)	781
HinfI	GANTC	2 cut(s)	194, 559
HpaII	CCGG	4 cut(s)	64, 234, 253, 857
HphI	GGTGA	2 cut(s)	554, 676
Hpy166II	GTNNAC	4 cut(s)	184, 308, 781, 963
Hpy188I	TCNGA	4 cut(s)	74, 263, 466, 881
Hpy188III	TCNNGA	2 cut(s)	191, 282
Hpy8I	GTNNAC	4 cut(s)	184, 308, 781, 963
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	3 cut(s)	118, 167, 892
HpyCH4IV	ACGT	1 cut(s)	200
HpyF10VI	GCNNNNNNNGC	4 cut(s)	377, 667, 676, 1011
HpyF3I	CTNAG	3 cut(s)	215, 336, 753
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	8 cut(s)	482, 559, 686, 824, 840, 869, 909, 1013
HspAI	GCGC	1 cut(s)	647
LmnI	GCTCC	2 cut(s)	11, 1019
Lsp1109I	GCAGC	7 cut(s)	166, 316, 319, 380, 406, 691, 796
LweI	GCATC	3 cut(s)	491, 697, 1014
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	5 cut(s)	218, 551, 610, 868, 919
MboII	GAAGA	4 cut(s)	133, 134, 257, 610
MfeI	CAATTG	1 cut(s)	979
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	257, 489, 758, 979, 988
MmeI	TCCRAC	2 cut(s)	97, 831
MnlI	CCTC	9 cut(s)	71, 95, 143, 172, 181, 232, 235, 748, 951
Mph1103I	ATGCAT	1 cut(s)	484
MseI	TTAA	2 cut(s)	437, 567
MspCI	CTTAAG	1 cut(s)	566
MspI	CCGG	4 cut(s)	64, 234, 253, 857
MspR9I	CCNGG	5 cut(s)	10, 235, 253, 254, 858
MunI	CAATTG	1 cut(s)	979
MvaI	CCWGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	4 cut(s)	377, 667, 676, 1011
NciI	CCSGG	4 cut(s)	235, 253, 254, 858
NcoI	CCATGG	2 cut(s)	820, 1009
NdeI	CATATG	1 cut(s)	785
NlaIII	CATG	8 cut(s)	482, 559, 686, 824, 840, 869, 909, 1013
NlaIV	GGNNCC	5 cut(s)	164, 718, 855, 894, 1015
NmuCI	GTSAC	5 cut(s)	218, 551, 610, 868, 919
NsiI	ATGCAT	1 cut(s)	484
NspI	RCATGY	1 cut(s)	840
PaeI	GCATGC	1 cut(s)	840
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	194, 559
PkrI	GCNGC	9 cut(s)	156, 331, 334, 370, 421, 681, 731, 811, 897
Psp124BI	GAGCTC	1 cut(s)	8
Psp1406I	AACGTT	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	5 cut(s)	164, 718, 855, 894, 1015
PspPI	GGNCC	2 cut(s)	163, 181
PstI	CTGCAG	1 cut(s)	814
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	2 cut(s)	437, 567
SatI	GCNGC	9 cut(s)	155, 330, 333, 369, 420, 680, 730, 810, 896
Sau96I	GGNCC	2 cut(s)	163, 181
ScrFI	CCNGG	5 cut(s)	10, 235, 253, 254, 858
SduI	GDGCHC	1 cut(s)	8
SfaNI	GCATC	3 cut(s)	491, 697, 1014
SfcI	CTRYAG	3 cut(s)	525, 541, 810
SinI	GGWCC	2 cut(s)	163, 181
SmaI	CCCGGG	1 cut(s)	254
SmlI	CTYRAG	2 cut(s)	301, 566
SmoI	CTYRAG	2 cut(s)	301, 566
SphI	GCATGC	1 cut(s)	840
Sse9I	AATT	5 cut(s)	257, 489, 758, 979, 988
SsiI	CCGC	4 cut(s)	88, 595, 729, 896
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	5 cut(s)	8, 233, 251, 252, 856
StyI	CCWWGG	2 cut(s)	820, 1009
TaaI	ACNGT	3 cut(s)	118, 167, 892
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	3 cut(s)	24, 120, 485
TaqII	GACCGA	1 cut(s)	671
TasI	AATT	5 cut(s)	257, 489, 758, 979, 988
TauI	GCSGC	2 cut(s)	732, 898
TfiI	GAWTC	2 cut(s)	194, 559
Tru1I	TTAA	2 cut(s)	437, 567
Tru9I	TTAA	2 cut(s)	437, 567
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	5 cut(s)	218, 551, 610, 868, 919
TseI	GCWGC	7 cut(s)	154, 329, 332, 368, 419, 679, 809
Tsp45I	GTSAC	5 cut(s)	218, 551, 610, 868, 919
TspDTI	ATGAA	5 cut(s)	108, 459, 483, 526, 820
TspGWI	ACGGA	2 cut(s)	163, 729
TspMI	CCCGGG	1 cut(s)	252
TspRI	CASTG	1 cut(s)	223
Vha464I	CTTAAG	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	163, 181
XapI	RAATTY	3 cut(s)	257, 758, 988
XceI	RCATGY	1 cut(s)	840
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1016
XmaI	CCCGGG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.