Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

47525918 .. 47526379

Gene Structure 462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG330200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTAAGCAAAGCATGCACACCCTTGAGTGGGAAAAAAAATTTGGTTGCCGAGGATGATGACCTTCTGAGCTATTTGGCTATGAGGATTCTATTAAAGGTGGGAGCAACTGTGAAGCTTTGTGAAAATGGAGGAGAAGCTCTAGATGTAATTCGCATAGATCTACTCAACCAAGGGAAACATGAATATGCTAATGGACTGTCAGTAAGTGACTTTGGTGTTGAAATTAACATGCAGATGCCAGAAATGGATGGATTTGAGGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTCCGCATTCTGATCATTGCATTAACAGCTCATACACAGGCGAGGAAACAAGAAGGATGTTGGAGGCTGGCATGGATGACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

128

Amino Acids

14.32

Weight (kDa)

6.41

Isoelectric Point (pI)

25.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	15 - 115	7.8e-07	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	29, 30
AgsI	TTSAA	1 cut(s)	224
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	4 cut(s)	72, 118, 140, 329
AluI	AGCT	4 cut(s)	72, 118, 140, 329
ApoI	RAATTY	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	287
BccI	CCATC	1 cut(s)	245
BclI	TGATCA	1 cut(s)	312
BfaI	CTAG	1 cut(s)	143
BglII	AGATCT	1 cut(s)	160
BmsI	GCATC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	51, 172
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 30
Bse3DI	GCAATG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	51, 172
BseGI	GGATG	4 cut(s)	61, 256, 362, 381
BseLI	CCNNNNNNNGG	2 cut(s)	29, 30
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	29, 30
BsmI	GAATGC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	160, 312
BspACI	CCGC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	315
BssECI	CCNNGG	2 cut(s)	51, 172
BssMI	GATC	2 cut(s)	160, 312
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	2 cut(s)	112, 201
BstAPI	GCANNNNNTGC	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	16, 369
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	4 cut(s)	61, 256, 362, 381
BstKTI	GATC	2 cut(s)	163, 315
BstMBI	GATC	2 cut(s)	160, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	15, 326
BstNSI	RCATGY	2 cut(s)	18, 235
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BtsCI	GGATG	4 cut(s)	61, 256, 362, 381
Cac8I	GCNNGC	2 cut(s)	16, 369
CviAII	CATG	5 cut(s)	15, 182, 232, 299, 372
CviJI	RGCY	6 cut(s)	72, 80, 118, 140, 329, 367
CviKI_1	RGCY	6 cut(s)	72, 80, 118, 140, 329, 367
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	162, 314
DpnII	GATC	2 cut(s)	160, 312
Eco130I	CCWWGG	1 cut(s)	172
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	5 cut(s)	18, 185, 235, 302, 375
FaiI	YATR	9 cut(s)	16, 83, 158, 183, 189, 233, 300, 333, 373
FatI	CATG	5 cut(s)	14, 181, 231, 298, 371
FbaI	TGATCA	1 cut(s)	312
FokI	GGATG	3 cut(s)	68, 263, 369
FspBI	CTAG	1 cut(s)	143
Hin1II	CATG	5 cut(s)	18, 185, 235, 302, 375
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	69, 312
Hpy188III	TCNNGA	1 cut(s)	143
HpyAV	CCTTC	2 cut(s)	74, 347
HpyCH4III	ACNGT	2 cut(s)	112, 201
HpyCH4V	TGCA	3 cut(s)	18, 235, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	15, 326
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	5 cut(s)	18, 185, 235, 302, 375
Ksp22I	TGATCA	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	160, 312
LmnI	GCTCC	1 cut(s)	104
LpnPI	CCDG	3 cut(s)	255, 323, 353
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	2 cut(s)	162, 314
MboI	GATC	2 cut(s)	160, 312
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	3 cut(s)	40, 150, 225
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	6 cut(s)	46, 78, 125, 253, 336, 357
MseI	TTAA	3 cut(s)	95, 228, 323
MslI	CAYNNNNRTG	2 cut(s)	186, 236
Mva1269I	GAATGC	1 cut(s)	306
MwoI	GCNNNNNNNGC	2 cut(s)	15, 326
NdeII	GATC	2 cut(s)	160, 312
NlaIII	CATG	5 cut(s)	18, 185, 235, 302, 375
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	209
NspI	RCATGY	2 cut(s)	18, 235
PaeI	GCATGC	1 cut(s)	18
PctI	GAATGC	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	88
PsuI	RGATCY	1 cut(s)	160
RseI	CAYNNNNRTG	2 cut(s)	186, 236
SaqAI	TTAA	3 cut(s)	95, 228, 323
Sau3AI	GATC	2 cut(s)	160, 312
SetI	ASST	6 cut(s)	66, 74, 102, 120, 142, 331
SfaNI	GCATC	1 cut(s)	228
SmiMI	CAYNNNNRTG	2 cut(s)	186, 236
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	3 cut(s)	40, 150, 225
SsiI	CCGC	1 cut(s)	304
SspMI	CTAG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	2 cut(s)	112, 201
TasI	AATT	3 cut(s)	40, 150, 225
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	3 cut(s)	95, 228, 323
Tru9I	TTAA	3 cut(s)	95, 228, 323
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	198
XapI	RAATTY	1 cut(s)	40
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	2 cut(s)	18, 235
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.