Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

868396 .. 868785

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG006400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGACTTGAGGGGCCTTGATCCGGATGATGTCATCATTCTTCATGGTACTTGTCTTTTCGAAGTGGTAAGATTTCTTCCAGAGTATGGGGGTGCACTACCAAATAGATCAGGAGGGGACACATTTCAGGTTGGGTCAATAGTCTCCCGAGCTCCTAGTTCGTCAAGATGTCGGTTACATACTGATGTTGAATCTGATATCTCATCTTCACCAATCCAATGTCATGATCAGTCTCATGATAATAATGTTGGCTCTACATCAAGAAACTCGCCAGTTGGTCATGACCACCCACTTCCACATGGAGAAACACATGAACATGGTAATCCGAGCACACCCTTGAGTGGGAAAAAAATTTTGGTTGCCGAGGATGATGAGCTTCTGAGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

129

Amino Acids

13.94

Weight (kDa)

5.29

Isoelectric Point (pI)

47.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	22
AclWI	GGATC	1 cut(s)	14
AcsI	RAATTY	1 cut(s)	351
AfaI	GTAC	1 cut(s)	49
AfiI	CCNNNNNNNGG	4 cut(s)	22, 86, 341, 342
AgsI	TTSAA	1 cut(s)	191
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	2 cut(s)	152, 376
AluI	AGCT	2 cut(s)	152, 376
Alw21I	GWGCWC	3 cut(s)	97, 154, 332
Alw26I	GTCTC	2 cut(s)	148, 237
Alw44I	GTGCAC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	14
Ama87I	CYCGRG	1 cut(s)	147
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	1 cut(s)	13
ApaLI	GTGCAC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	201
AsuII	TTCGAA	1 cut(s)	60
AvaI	CYCGRG	1 cut(s)	147
BaeGI	GKGCMC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	154
BarI	GAAGNNNNNNTAC	2 cut(s)	60, 92
Bbv12I	GWGCWC	3 cut(s)	97, 154, 332
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	148, 237
BfaI	CTAG	1 cut(s)	156
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	14
Bpu14I	TTCGAA	1 cut(s)	60
BpuEI	CTTGAG	2 cut(s)	28, 358
BsaJI	CCNNGG	1 cut(s)	363
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 86, 341, 342
Bse1I	ACTGG	1 cut(s)	272
BseAI	TCCGGA	1 cut(s)	22
BseDI	CCNNGG	1 cut(s)	363
BseGI	GGATG	2 cut(s)	31, 373
BseLI	CCNNNNNNNGG	4 cut(s)	22, 86, 341, 342
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	272
BseSI	GKGCMC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	3 cut(s)	97, 154, 332
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	131
BslI	CCNNNNNNNGG	4 cut(s)	22, 86, 341, 342
BsmAI	GTCTC	2 cut(s)	148, 237
BsmFI	GGGAC	1 cut(s)	131
BsnI	GGCC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	147
Bsp119I	TTCGAA	1 cut(s)	60
Bsp1286I	GDGCHC	3 cut(s)	97, 154, 332
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	3 cut(s)	19, 107, 226
BspANI	GGCC	1 cut(s)	15
BspCNI	CTCAG	1 cut(s)	372
BspEI	TCCGGA	1 cut(s)	22
BspHI	TCATGA	3 cut(s)	223, 235, 280
BspLI	GGNNCC	1 cut(s)	14
BspPI	GGATC	1 cut(s)	14
BspT104I	TTCGAA	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	272
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	3 cut(s)	19, 107, 226
BstBI	TTCGAA	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	380
BstF5I	GGATG	2 cut(s)	31, 373
BstKTI	GATC	3 cut(s)	22, 110, 229
BstMAI	GTCTC	2 cut(s)	148, 237
BstMBI	GATC	3 cut(s)	19, 107, 226
BstSLI	GKGCMC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	15
BtsCI	GGATG	2 cut(s)	31, 373
CciI	TCATGA	3 cut(s)	223, 235, 280
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	48
CviAII	CATG	7 cut(s)	44, 224, 236, 281, 299, 311, 317
CviJI	RGCY	4 cut(s)	15, 152, 252, 376
CviKI_1	RGCY	4 cut(s)	15, 152, 252, 376
CviQI	GTAC	1 cut(s)	48
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	3 cut(s)	21, 109, 228
DpnII	GATC	3 cut(s)	19, 107, 226
Ecl136II	GAGCTC	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	154
Eco32I	GATATC	1 cut(s)	199
Eco53kI	GAGCTC	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	152
EcoO109I	RGGNCCY	1 cut(s)	13
EcoRV	GATATC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	154
FaeI	CATG	7 cut(s)	47, 227, 239, 284, 302, 314, 320
FaiI	YATR	9 cut(s)	45, 87, 180, 225, 237, 282, 300, 312, 318
FaqI	GGGAC	1 cut(s)	131
FatI	CATG	7 cut(s)	43, 223, 235, 280, 298, 310, 316
FbaI	TGATCA	1 cut(s)	226
FokI	GGATG	2 cut(s)	38, 380
FriOI	GRGCYC	1 cut(s)	154
FspBI	CTAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	7 cut(s)	47, 227, 239, 284, 302, 314, 320
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	201
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	4 cut(s)	196, 327, 381, 389
Hpy188III	TCNNGA	9 cut(s)	23, 80, 111, 147, 165, 224, 236, 261, 281
Hpy8I	GTNNAC	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	7 cut(s)	47, 227, 239, 284, 302, 314, 320
Kpn2I	TCCGGA	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	19, 107, 226
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	5 cut(s)	36, 93, 96, 113, 285
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	21, 109, 228
MboI	GATC	3 cut(s)	19, 107, 226
MboII	GAAGA	3 cut(s)	32, 68, 198
MhlI	GDGCHC	3 cut(s)	97, 154, 332
MluCI	AATT	1 cut(s)	351
MnlI	CCTC	4 cut(s)	3, 107, 358, 375
MroI	TCCGGA	1 cut(s)	22
MslI	CAYNNNNRTG	2 cut(s)	183, 315
MspI	CCGG	1 cut(s)	23
NdeII	GATC	3 cut(s)	19, 107, 226
NlaIII	CATG	7 cut(s)	47, 227, 239, 284, 302, 314, 320
NlaIV	GGNNCC	1 cut(s)	14
NmeAIII	GCCGAG	1 cut(s)	388
NspV	TTCGAA	1 cut(s)	60
PagI	TCATGA	3 cut(s)	223, 235, 280
PfeI	GAWTC	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	13
RsaI	GTAC	1 cut(s)	49
RsaNI	GTAC	1 cut(s)	48
RseI	CAYNNNNRTG	2 cut(s)	183, 315
SacI	GAGCTC	1 cut(s)	154
Sau3AI	GATC	3 cut(s)	19, 107, 226
Sau96I	GGNCC	1 cut(s)	13
SduI	GDGCHC	3 cut(s)	97, 154, 332
SetI	ASST	3 cut(s)	132, 154, 378
SfuI	TTCGAA	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	183, 315
SmlI	CTYRAG	2 cut(s)	7, 337
SmoI	CTYRAG	2 cut(s)	7, 337
Sse9I	AATT	1 cut(s)	351
SspMI	CTAG	1 cut(s)	156
SstI	GAGCTC	1 cut(s)	154
TaqI	TCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	191
TspDTI	ATGAA	2 cut(s)	32, 327
Van91I	CCANNNNNTGG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	93
XapI	RAATTY	1 cut(s)	351
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.