Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

948796 .. 949113

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG007400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGACTTGAGTGGCCTTGATCCGGATGATGTCATCATAAAATTGGCACTTCATGTTACTCATCTTTTCGAAGTGGTAAGATTTCTTCCAGAGTATGGGGGTGCACTACCAAATAGATCAGCAGGGGTCACATTTCAGGTTGGATCAAAAGTAGTCTCTCGAGCTCCTAGTTCATCAAGATATCAGTTACATACTGATGATGAATCTGATATCTCATCTTCACCAATCCAATGTCATGATCAGTCTGATAATGTTGGCTCTACGCCAAGAAGCTCACCAGTTGGTCATGACCACCCACTTCCGCATAGAGATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

105

Amino Acids

11.4

Weight (kDa)

5.47

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AccIII	TCCGGA	1 cut(s)	22
AciI	CCGC	1 cut(s)	302
AclWI	GGATC	2 cut(s)	14, 151
AfiI	CCNNNNNNNGG	2 cut(s)	22, 95
AluBI	AGCT	2 cut(s)	164, 273
AluI	AGCT	2 cut(s)	164, 273
Alw21I	GWGCWC	2 cut(s)	106, 166
Alw26I	GTCTC	1 cut(s)	160
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	14, 151
Ama87I	CYCGRG	1 cut(s)	159
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	1 cut(s)	13
ApaLI	GTGCAC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	213, 267
AsuII	TTCGAA	1 cut(s)	69
AvaI	CYCGRG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	69, 101
Bbv12I	GWGCWC	2 cut(s)	106, 166
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	168
BmeT110I	CYCGRG	1 cut(s)	159
Bpu14I	TTCGAA	1 cut(s)	69
BpuEI	CTTGAG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	22
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 95
Bse1I	ACTGG	1 cut(s)	278
BseAI	TCCGGA	1 cut(s)	22
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	2 cut(s)	22, 95
BseNI	ACTGG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	106
BshFI	GGCC	1 cut(s)	15
BsiHKAI	GWGCWC	2 cut(s)	106, 166
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	2 cut(s)	22, 95
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	2 cut(s)	106, 166
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	4 cut(s)	19, 116, 143, 238
BspACI	CCGC	1 cut(s)	302
BspANI	GGCC	1 cut(s)	15
BspEI	TCCGGA	1 cut(s)	22
BspHI	TCATGA	2 cut(s)	235, 286
BspPI	GGATC	2 cut(s)	14, 151
BspT104I	TTCGAA	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	278
BssMI	GATC	4 cut(s)	19, 116, 143, 238
BstBI	TTCGAA	1 cut(s)	69
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	4 cut(s)	22, 119, 146, 241
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	4 cut(s)	19, 116, 143, 238
BstSLI	GKGCMC	1 cut(s)	106
BsuRI	GGCC	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	31
CciI	TCATGA	2 cut(s)	235, 286
CviAII	CATG	4 cut(s)	53, 236, 287, 315
CviJI	RGCY	4 cut(s)	15, 164, 258, 273
CviKI_1	RGCY	4 cut(s)	15, 164, 258, 273
DpnI	GATC	4 cut(s)	21, 118, 145, 240
DpnII	GATC	4 cut(s)	19, 116, 143, 238
Ecl136II	GAGCTC	1 cut(s)	164
Eco24I	GRGCYC	1 cut(s)	166
Eco32I	GATATC	2 cut(s)	182, 211
Eco53kI	GAGCTC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	164
EcoRV	GATATC	2 cut(s)	182, 211
EcoT38I	GRGCYC	1 cut(s)	166
FaeI	CATG	4 cut(s)	56, 239, 290, 318
FaiI	YATR	8 cut(s)	38, 54, 96, 192, 237, 288, 306, 316
FatI	CATG	4 cut(s)	52, 235, 286, 314
FbaI	TGATCA	1 cut(s)	238
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	1 cut(s)	166
FspBI	CTAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	4 cut(s)	56, 239, 290, 318
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	213, 267
Hpy166II	GTNNAC	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	208, 247
Hpy188III	TCNNGA	6 cut(s)	23, 89, 159, 177, 236, 287
Hpy8I	GTNNAC	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	104
Hsp92II	CATG	4 cut(s)	56, 239, 290, 318
Kpn2I	TCCGGA	1 cut(s)	22
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	4 cut(s)	19, 116, 143, 238
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	5 cut(s)	36, 102, 108, 122, 291
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	3 cut(s)	55, 127, 186
MalI	GATC	4 cut(s)	21, 118, 145, 240
MboI	GATC	4 cut(s)	19, 116, 143, 238
MboII	GAAGA	2 cut(s)	77, 210
MhlI	GDGCHC	2 cut(s)	106, 166
MluCI	AATT	1 cut(s)	41
MmeI	TCCRAC	1 cut(s)	121
MroI	TCCGGA	1 cut(s)	22
MslI	CAYNNNNRTG	1 cut(s)	195
MspI	CCGG	1 cut(s)	23
NdeII	GATC	4 cut(s)	19, 116, 143, 238
NlaIII	CATG	4 cut(s)	56, 239, 290, 318
NmuCI	GTSAC	1 cut(s)	127
NspV	TTCGAA	1 cut(s)	69
PaeR7I	CTCGAG	1 cut(s)	159
PagI	TCATGA	2 cut(s)	235, 286
PfeI	GAWTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	195
SacI	GAGCTC	1 cut(s)	166
Sau3AI	GATC	4 cut(s)	19, 116, 143, 238
SduI	GDGCHC	2 cut(s)	106, 166
SetI	ASST	3 cut(s)	141, 166, 275
Sfr274I	CTCGAG	1 cut(s)	159
SfuI	TTCGAA	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	159
SmiMI	CAYNNNNRTG	1 cut(s)	195
SmlI	CTYRAG	2 cut(s)	7, 159
SmoI	CTYRAG	2 cut(s)	7, 159
Sse9I	AATT	1 cut(s)	41
SsiI	CCGC	1 cut(s)	302
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	1 cut(s)	166
TaqI	TCGA	2 cut(s)	69, 160
TasI	AATT	1 cut(s)	41
TfiI	GAWTC	1 cut(s)	203
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	3 cut(s)	41, 162, 216
Van91I	CCANNNNNTGG	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	102
XhoI	CTCGAG	1 cut(s)	159
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.