Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

6038126 .. 6038574

Gene Structure 449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22465

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGAATTCTGTTAAAGGAGGGAGCAAATGTGAAGCTTTGTAAAAATGGAAGAGAAGCTCTAGACGTAATTCAAATGGATCTAGACAACCAAGGGAAACATGAATATGATTTTGTACTAATGGACTGTCAGATGCCTGAAATGGATGGATTTGAAGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTTTGCATTCCGATCATTGCATTAACAGTTCATACACCAGGCGAGGAAACAAGAAGGATGTTGGAGGCCGGCATGGATGACTATTTGAGCAAACCCTTGGGGAAGGATCGTCTACTTGAAGCAATGGGTAGACTGGTAGGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

113

Amino Acids

12.9

Weight (kDa)

5.79

Isoelectric Point (pI)

15.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	3 - 106	5.8e-22	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	307, 325
AclWI	GGATC	2 cut(s)	87, 309
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	1 cut(s)	117
AgsI	TTSAA	3 cut(s)	74, 155, 314
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	2 cut(s)	37, 59
AluI	AGCT	2 cut(s)	37, 59
AlwI	GGATC	2 cut(s)	87, 309
AoxI	GGCC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	182
BccI	CCATC	1 cut(s)	140
BciT130I	CCWGG	1 cut(s)	234
BfaI	CTAG	2 cut(s)	62, 83
Bme1390I	CCNGG	1 cut(s)	234
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	91, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	333
Bse3DI	GCAATG	2 cut(s)	210, 324
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	2 cut(s)	91, 291
BseGI	GGATG	3 cut(s)	151, 258, 277
BseMI	GCAATG	2 cut(s)	210, 324
BseNI	ACTGG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	264
BsmI	GAATGC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	79, 207, 301
BspANI	GGCC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	87, 309
BsrDI	GCAATG	2 cut(s)	210, 324
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	91, 291
BssMI	GATC	3 cut(s)	79, 207, 301
BssT1I	CCWWGG	2 cut(s)	91, 291
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	128, 223
Bst6I	CTCTTC	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	265
BstF5I	GGATG	3 cut(s)	151, 258, 277
BstKTI	GATC	3 cut(s)	82, 210, 304
BstMBI	GATC	3 cut(s)	79, 207, 301
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	3 cut(s)	151, 258, 277
Cac8I	GCNNGC	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	3 cut(s)	101, 194, 268
CviJI	RGCY	3 cut(s)	37, 59, 263
CviKI_1	RGCY	3 cut(s)	37, 59, 263
CviQI	GTAC	1 cut(s)	116
DpnI	GATC	3 cut(s)	81, 209, 303
DpnII	GATC	3 cut(s)	79, 207, 301
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	91, 291
EcoRI	GAATTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	91, 291
ErhI	CCWWGG	2 cut(s)	91, 291
FaeI	CATG	3 cut(s)	104, 197, 271
FaiI	YATR	5 cut(s)	102, 108, 195, 228, 269
FatI	CATG	3 cut(s)	100, 193, 267
FblI	GTMKAC	2 cut(s)	307, 325
FokI	GGATG	3 cut(s)	158, 265, 284
FspBI	CTAG	2 cut(s)	62, 83
HaeIII	GGCC	1 cut(s)	263
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	3 cut(s)	104, 197, 271
HindIII	AAGCTT	1 cut(s)	35
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	308, 326
Hpy188I	TCNGA	2 cut(s)	132, 207
Hpy188III	TCNNGA	2 cut(s)	62, 83
Hpy8I	GTNNAC	2 cut(s)	308, 326
HpyAV	CCTTC	2 cut(s)	243, 292
HpyCH4III	ACNGT	2 cut(s)	128, 223
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	201, 215
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	104, 197, 271
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	79, 207, 301
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	5 cut(s)	150, 219, 246, 277, 314
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	62, 83
MaeII	ACGT	1 cut(s)	66
MalI	GATC	3 cut(s)	81, 209, 303
MboI	GATC	3 cut(s)	79, 207, 301
MboII	GAAGA	1 cut(s)	63
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	2 cut(s)	6, 69
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	3 cut(s)	13, 232, 253
MroNI	GCCGGC	1 cut(s)	263
MseI	TTAA	2 cut(s)	14, 218
MslI	CAYNNNNRTG	1 cut(s)	105
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	234
NaeI	GCCGGC	1 cut(s)	265
NdeII	GATC	3 cut(s)	79, 207, 301
NgoMIV	GCCGGC	1 cut(s)	263
NlaIII	CATG	3 cut(s)	104, 197, 271
PctI	GAATGC	1 cut(s)	201
PdiI	GCCGGC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	14, 218
Sau3AI	GATC	3 cut(s)	79, 207, 301
ScrFI	CCNGG	1 cut(s)	234
SetI	ASST	3 cut(s)	39, 61, 69
SfaNI	GCATC	1 cut(s)	123
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	2 cut(s)	6, 69
SspMI	CTAG	2 cut(s)	62, 83
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	2 cut(s)	91, 291
TaaI	ACNGT	2 cut(s)	128, 223
TaiI	ACGT	1 cut(s)	69
TasI	AATT	2 cut(s)	6, 69
TatI	WGTACW	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	14, 218
Tru9I	TTAA	2 cut(s)	14, 218
TspDTI	ATGAA	2 cut(s)	117, 215
XapI	RAATTY	1 cut(s)	6
XbaI	TCTAGA	2 cut(s)	61, 82
XmiI	GTMKAC	2 cut(s)	307, 325
XspI	CTAG	2 cut(s)	62, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.