Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

6044234 .. 6045476

Gene Structure 1243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22467

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGATGGATTTGAAGCAACTAGGCAGATGAGGAAAGTGGAGAAATCTTACCATCTTCGCATTCCAATCGTTGCATTAACAGCTTATACACCAGGCGAGGAAACAAGAAGGATGTTGGAGGCCGGCATGGATGAATATTTAAGCAAACCCTTGGGAAAGGATCGTCTACTTGAAACAATGGGTAAACAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

64

Amino Acids

7.39

Weight (kDa)

7.88

Isoelectric Point (pI)

22.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	1 - 59	1.1e-09	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	14, 173
AjnI	CCWGG	1 cut(s)	91
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	1 cut(s)	120
BccI	CCATC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	1 cut(s)	93
BfaI	CTAG	1 cut(s)	21
Bme1390I	CCNGG	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	150
Bse118I	RCCGGY	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	3 cut(s)	10, 117, 136
BshFI	GGCC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	122
Bsp143I	GATC	1 cut(s)	160
BspANI	GGCC	1 cut(s)	122
BspPI	GGATC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	1 cut(s)	160
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	124
BstF5I	GGATG	3 cut(s)	10, 117, 136
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	3 cut(s)	10, 117, 136
Cac8I	GCNNGC	1 cut(s)	124
Cfr10I	RCCGGY	1 cut(s)	122
CviAII	CATG	1 cut(s)	127
CviJI	RGCY	2 cut(s)	83, 122
CviKI_1	RGCY	2 cut(s)	83, 122
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	1 cut(s)	130
FaiI	YATR	2 cut(s)	87, 128
FatI	CATG	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	166
FokI	GGATG	3 cut(s)	17, 124, 143
FspBI	CTAG	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	1 cut(s)	130
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	2 cut(s)	167, 185
Hpy8I	GTNNAC	2 cut(s)	167, 185
HpyAV	CCTTC	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
Hsp92II	CATG	1 cut(s)	130
KroI	GCCGGC	1 cut(s)	122
KroNI	GCCGGC	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	160
LpnPI	CCDG	3 cut(s)	78, 105, 136
MaeI	CTAG	1 cut(s)	21
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	24, 91, 112
MroNI	GCCGGC	1 cut(s)	122
MseI	TTAA	3 cut(s)	77, 140, 193
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	93
MwoI	GCNNNNNNNGC	1 cut(s)	80
NaeI	GCCGGC	1 cut(s)	124
NdeII	GATC	1 cut(s)	160
NgoMIV	GCCGGC	1 cut(s)	122
NlaIII	CATG	1 cut(s)	130
PctI	GAATGC	1 cut(s)	60
PdiI	GCCGGC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	77, 140, 193
Sau3AI	GATC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	1 cut(s)	85
SgeI	CNNG	9 cut(s)	33, 104, 105, 109, 117, 135, 139, 163, 182
SspI	AATATT	1 cut(s)	137
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	150
Tru1I	TTAA	3 cut(s)	77, 140, 193
Tru9I	TTAA	3 cut(s)	77, 140, 193
TspDTI	ATGAA	1 cut(s)	147
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.