Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

949167 .. 949503

Gene Structure 337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG007500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAGAATTCTTTCAACGGAGGGAGCAACTGTGAAGCTTTGTAAAAATGGAGGAGAAGCTCTAGATGTAATTCGCATAGATCTACTCAACCAAGGGAAACATGAATATGATTTTGTACTAATGGACTGTCAGATGCCTGGAGTGGATAGATTTGAAGCAACAAGGGAGATAATTAGGAAAGTGGAGAAAACTCACCATGTTTGCATTATAAGAGAAGTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

74

Amino Acids

8.47

Weight (kDa)

6.27

Isoelectric Point (pI)

13.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	2 - 69	5.4e-07	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	15, 155
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	2 cut(s)	37, 59
AluI	AGCT	2 cut(s)	37, 59
ApoI	RAATTY	1 cut(s)	6
Asp700I	GAANNNNTTC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	138
BfaI	CTAG	1 cut(s)	62
BglII	AGATCT	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	15, 45
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	79
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	31, 128
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	2 cut(s)	101, 197
CviJI	RGCY	2 cut(s)	37, 59
CviKI_1	RGCY	2 cut(s)	37, 59
CviQI	GTAC	1 cut(s)	116
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	91
EcoRI	GAATTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	2 cut(s)	104, 200
FaiI	YATR	5 cut(s)	77, 102, 108, 198, 209
FatI	CATG	2 cut(s)	100, 196
FspBI	CTAG	1 cut(s)	62
GsuI	CTGGAG	1 cut(s)	159
Hin1II	CATG	2 cut(s)	104, 200
HindIII	AAGCTT	1 cut(s)	35
HphI	GGTGA	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	31, 128
HpyCH4V	TGCA	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	104, 200
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	2 cut(s)	123, 150
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	62
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	3 cut(s)	6, 69, 171
MnlI	CCTC	2 cut(s)	13, 44
MroXI	GAANNNNTTC	1 cut(s)	10
MslI	CAYNNNNRTG	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	138
MvaI	CCWGG	1 cut(s)	138
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	2 cut(s)	104, 200
PdmI	GAANNNNTTC	1 cut(s)	10
PsiI	TTATAA	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	79
ScrFI	CCNGG	1 cut(s)	138
SetI	ASST	2 cut(s)	39, 61
SfaNI	GCATC	1 cut(s)	123
SgeI	CNNG	7 cut(s)	74, 104, 113, 149, 150, 174, 209
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	3 cut(s)	6, 69, 171
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	1 cut(s)	91
TaaI	ACNGT	2 cut(s)	31, 128
TasI	AATT	3 cut(s)	6, 69, 171
TatI	WGTACW	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	32
XapI	RAATTY	1 cut(s)	6
XbaI	TCTAGA	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.