Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

876005 .. 876347

Gene Structure 343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG006500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGGTCATGCTGGTGTGTCAGATGCCAGAAATGGATGGATTTGAAGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATATTCGCATTCCGATCATTGCATTAACAGCTCATACACCAGGCGAGGAAACAAGACGGATGCTAGAGGCCGGCATGGATGACTATTTGAGCAAACCCTTGGAAAAGGATCGTCTACTTGAAACAATGGGTAGACTGGTAGGGAAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

77

Amino Acids

8.89

Weight (kDa)

6.28

Isoelectric Point (pI)

31.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	2 - 69	4.4e-15	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	196, 214
AclWI	GGATC	1 cut(s)	198
AgsI	TTSAA	2 cut(s)	44, 203
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	113
AluI	AGCT	1 cut(s)	113
AlwI	GGATC	1 cut(s)	198
AoxI	GGCC	1 cut(s)	150
AsuHPI	GGTGA	1 cut(s)	71
BccI	CCATC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	123
BfaI	CTAG	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	123
BmsI	GCATC	2 cut(s)	12, 132
BsaJI	CCNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	222
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	180
BseGI	GGATG	3 cut(s)	40, 147, 166
BseMI	GCAATG	1 cut(s)	99
BseNI	ACTGG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	90
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	96, 190
BspANI	GGCC	1 cut(s)	152
BspPI	GGATC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	222
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	180
BssMI	GATC	2 cut(s)	96, 190
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	154
BstF5I	GGATG	3 cut(s)	40, 147, 166
BstKTI	GATC	2 cut(s)	99, 193
BstMBI	GATC	2 cut(s)	96, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	3 cut(s)	40, 147, 166
Cac8I	GCNNGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	152
CviAII	CATG	2 cut(s)	7, 157
CviJI	RGCY	2 cut(s)	113, 152
CviKI_1	RGCY	2 cut(s)	113, 152
DpnI	GATC	2 cut(s)	98, 192
DpnII	GATC	2 cut(s)	96, 190
Eco130I	CCWWGG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	10, 160
FaiI	YATR	4 cut(s)	8, 84, 117, 158
FatI	CATG	2 cut(s)	6, 156
FblI	GTMKAC	2 cut(s)	196, 214
FokI	GGATG	3 cut(s)	47, 154, 173
FspBI	CTAG	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	2 cut(s)	10, 160
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	197, 215
Hpy188I	TCNGA	2 cut(s)	21, 96
Hpy8I	GTNNAC	2 cut(s)	197, 215
HpyCH4V	TGCA	1 cut(s)	104
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
Hsp92II	CATG	2 cut(s)	10, 160
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	96, 190
LpnPI	CCDG	5 cut(s)	39, 108, 135, 166, 203
LweI	GCATC	2 cut(s)	12, 132
MaeI	CTAG	1 cut(s)	146
MalI	GATC	2 cut(s)	98, 192
MboI	GATC	2 cut(s)	96, 190
MnlI	CCTC	2 cut(s)	121, 142
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	1 cut(s)	107
MslI	CAYNNNNRTG	1 cut(s)	11
MspI	CCGG	1 cut(s)	153
MspR9I	CCNGG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	110
NaeI	GCCGGC	1 cut(s)	154
NdeII	GATC	2 cut(s)	96, 190
NgoMIV	GCCGGC	1 cut(s)	152
NlaIII	CATG	2 cut(s)	10, 160
PctI	GAATGC	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	96, 190
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	1 cut(s)	115
SfaNI	GCATC	2 cut(s)	12, 132
SmiMI	CAYNNNNRTG	1 cut(s)	11
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	180
Tru1I	TTAA	1 cut(s)	107
Tru9I	TTAA	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	154
XmiI	GTMKAC	2 cut(s)	196, 214
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.