Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

693957 .. 694486

Gene Structure 530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG005100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGATGAATCTGATATCTCATCTTCACCAATCCAATGTCATGATCAGTCTGATAATGTTGGCTCTACGCCAAGAAACTCACCAGTTGGTCATGACCACCCACTTCCGCATAGAGATACATGAACATGGTAATCCAAGCACACCCTTGAGTGGGAAAAAAATTTTGGTTGCCGAGGATGATGAGCTTCTGAGCTATTTGGCTATGAGAATTCTTTCAACGGAGGGAGCAACTGTGAAGCTTTGTAAAAATGGAGGAGAAGCTCTAGATGTAATTCGCATAGATCTACTCAACCAAGGGAAACATGAATATGATTTTGTACTAATGGACTGTCAGATGCCTGGAGTGGATGGATTTGAAGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTTTGCATTGTAAGAGAAGTCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

140

Amino Acids

15.87

Weight (kDa)

5.95

Isoelectric Point (pI)

24.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	54 - 136	2.7e-13	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	159, 207
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	2 cut(s)	149, 150
AgsI	TTSAA	2 cut(s)	216, 356
AjnI	CCWGG	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	4 cut(s)	184, 192, 238, 260
AluI	AGCT	4 cut(s)	184, 192, 238, 260
ApoI	RAATTY	2 cut(s)	159, 207
Asp700I	GAANNNNTTC	1 cut(s)	211
AsuHPI	GGTGA	3 cut(s)	17, 71, 383
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	339
BclI	TGATCA	1 cut(s)	42
BfaI	CTAG	1 cut(s)	263
BglII	AGATCT	1 cut(s)	280
Bme1390I	CCNGG	1 cut(s)	339
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	324
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	166
BsaJI	CCNNGG	2 cut(s)	171, 292
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 150
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	2 cut(s)	171, 292
BseGI	GGATG	2 cut(s)	181, 352
BseLI	CCNNNNNNNGG	2 cut(s)	149, 150
BseMII	CTCAG	1 cut(s)	179
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	267
BslI	CCNNNNNNNGG	2 cut(s)	149, 150
Bsp143I	GATC	2 cut(s)	42, 280
BspACI	CCGC	1 cut(s)	106
BspCNI	CTCAG	1 cut(s)	180
BspHI	TCATGA	2 cut(s)	39, 90
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	171, 292
BssMI	GATC	2 cut(s)	42, 280
BssT1I	CCWWGG	1 cut(s)	292
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	232, 329
BstDEI	CTNAG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	181, 352
BstKTI	GATC	2 cut(s)	45, 283
BstMBI	GATC	2 cut(s)	42, 280
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BtsCI	GGATG	2 cut(s)	181, 352
CciI	TCATGA	2 cut(s)	39, 90
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	6 cut(s)	40, 91, 119, 125, 302, 395
CviJI	RGCY	6 cut(s)	62, 184, 192, 200, 238, 260
CviKI_1	RGCY	6 cut(s)	62, 184, 192, 200, 238, 260
CviQI	GTAC	1 cut(s)	317
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	2 cut(s)	44, 282
DpnII	GATC	2 cut(s)	42, 280
Eco130I	CCWWGG	1 cut(s)	292
Eco32I	GATATC	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	337
EcoRV	GATATC	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	292
ErhI	CCWWGG	1 cut(s)	292
FaeI	CATG	6 cut(s)	43, 94, 122, 128, 305, 398
FatI	CATG	6 cut(s)	39, 90, 118, 124, 301, 394
FbaI	TGATCA	1 cut(s)	42
FokI	GGATG	2 cut(s)	188, 359
FspBI	CTAG	1 cut(s)	263
GsuI	CTGGAG	1 cut(s)	360
Hin1II	CATG	6 cut(s)	43, 94, 122, 128, 305, 398
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	3 cut(s)	17, 71, 383
Hpy188I	TCNGA	4 cut(s)	12, 51, 189, 333
Hpy188III	TCNNGA	3 cut(s)	40, 91, 263
HpyCH4III	ACNGT	2 cut(s)	232, 329
HpyCH4V	TGCA	1 cut(s)	402
HpyF3I	CTNAG	1 cut(s)	188
Hsp92II	CATG	6 cut(s)	43, 94, 122, 128, 305, 398
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	2 cut(s)	42, 280
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	3 cut(s)	95, 324, 351
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	1 cut(s)	263
MalI	GATC	2 cut(s)	44, 282
MboI	GATC	2 cut(s)	42, 280
MboII	GAAGA	1 cut(s)	14
MflI	RGATCY	1 cut(s)	280
MluCI	AATT	3 cut(s)	159, 207, 270
MnlI	CCTC	3 cut(s)	166, 214, 245
MroXI	GAANNNNTTC	1 cut(s)	211
MslI	CAYNNNNRTG	2 cut(s)	123, 306
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
NdeII	GATC	2 cut(s)	42, 280
NlaIII	CATG	6 cut(s)	43, 94, 122, 128, 305, 398
NmeAIII	GCCGAG	1 cut(s)	196
PagI	TCATGA	2 cut(s)	39, 90
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	280
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
RseI	CAYNNNNRTG	2 cut(s)	123, 306
Sau3AI	GATC	2 cut(s)	42, 280
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	4 cut(s)	186, 194, 240, 262
SfaNI	GCATC	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	123, 306
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	3 cut(s)	159, 207, 270
SsiI	CCGC	1 cut(s)	106
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	232, 329
TasI	AATT	3 cut(s)	159, 207, 270
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	7
TspDTI	ATGAA	3 cut(s)	20, 135, 318
TspGWI	ACGGA	1 cut(s)	233
XapI	RAATTY	2 cut(s)	159, 207
XbaI	TCTAGA	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.