Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Reverse (-)

24068508 .. 24069781

Gene Structure 1274 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00236710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGTTGGTTCTACGCCAAGAAATTCACCGGTTGGTCATGACCATACACTTCTGCATAGACAAATACATGAACATGGTAAGCCAAGCATGCGCACTCTTGAGTGGGAAAAAAATTTGGTTGCCGAGGATGATGACCTTCGAGCTATTTGGCTATGAGGATTCGTTAAAGGTGGGAGCAACTGTGAAGCTTTGTGAAAATGGAGGAGAAGCTCCGGATGTAATTCGCATAGATCTACTCAACCAAGGGAAACATGAATATACTAATGGACATCGGTGGGAGAGGAGAAGCAACTACATGTATAGCCAAGAGGACATTGATGTAATCCGGAATGAGTGGGCAAAATTTGTCTTCAAGTCATATATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

121

Amino Acids

14.34

Weight (kDa)

7.73

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	91
AccIII	TCCGGA	2 cut(s)	211, 324
AcsI	RAATTY	3 cut(s)	21, 111, 341
AflIII	ACRYGT	1 cut(s)	294
AgeI	ACCGGT	1 cut(s)	27
AgsI	TTSAA	1 cut(s)	352
AluBI	AGCT	3 cut(s)	142, 187, 209
AluI	AGCT	3 cut(s)	142, 187, 209
Aor13HI	TCCGGA	2 cut(s)	211, 324
ApoI	RAATTY	3 cut(s)	21, 111, 341
AsiGI	ACCGGT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	1 cut(s)	17
BbsI	GAAGAC	1 cut(s)	340
BglII	AGATCT	1 cut(s)	229
BpiI	GAAGAC	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	2 cut(s)	122, 241
BsaWI	WCCGGW	3 cut(s)	27, 211, 324
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse118I	RCCGGY	1 cut(s)	27
BseAI	TCCGGA	2 cut(s)	211, 324
BseDI	CCNNGG	2 cut(s)	122, 241
BseGI	GGATG	2 cut(s)	132, 220
BseRI	GAGGAG	2 cut(s)	216, 295
BshTI	ACCGGT	1 cut(s)	27
BsiSI	CCGG	3 cut(s)	28, 212, 325
Bsp13I	TCCGGA	2 cut(s)	211, 324
Bsp143I	GATC	1 cut(s)	229
BspEI	TCCGGA	2 cut(s)	211, 324
BspHI	TCATGA	1 cut(s)	36
BsrFI	RCCGGY	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	122, 241
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	88
BstF5I	GGATG	2 cut(s)	132, 220
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	1 cut(s)	87
BstNSI	RCATGY	2 cut(s)	90, 298
BstV2I	GAAGAC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	132, 220
Cac8I	GCNNGC	1 cut(s)	88
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	27
CspAI	ACCGGT	1 cut(s)	27
CviAII	CATG	6 cut(s)	37, 67, 73, 87, 251, 295
CviJI	RGCY	6 cut(s)	81, 142, 150, 187, 209, 303
CviKI_1	RGCY	6 cut(s)	81, 142, 150, 187, 209, 303
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	241
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	6 cut(s)	40, 70, 76, 90, 254, 298
FatI	CATG	6 cut(s)	36, 66, 72, 86, 250, 294
FokI	GGATG	2 cut(s)	139, 227
FspAI	RTGCGCAY	1 cut(s)	91
FspI	TGCGCA	1 cut(s)	91
GlaI	GCGC	1 cut(s)	91
HapII	CCGG	3 cut(s)	28, 212, 325
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	6 cut(s)	40, 70, 76, 90, 254, 298
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	185
HinfI	GANTC	1 cut(s)	158
HpaII	CCGG	3 cut(s)	28, 212, 325
HphI	GGTGA	1 cut(s)	17
Hpy188III	TCNNGA	4 cut(s)	37, 97, 212, 325
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4V	TGCA	1 cut(s)	54
HpyF10VI	GCNNNNNNNGC	1 cut(s)	87
Hsp92II	CATG	6 cut(s)	40, 70, 76, 90, 254, 298
HspAI	GCGC	1 cut(s)	90
Kpn2I	TCCGGA	2 cut(s)	211, 324
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	2 cut(s)	173, 214
LpnPI	CCDG	3 cut(s)	41, 225, 338
MalI	GATC	1 cut(s)	231
MboI	GATC	1 cut(s)	229
MboII	GAAGA	1 cut(s)	340
MflI	RGATCY	1 cut(s)	229
MluCI	AATT	4 cut(s)	21, 111, 219, 341
MnlI	CCTC	5 cut(s)	117, 148, 194, 273, 301
MroI	TCCGGA	2 cut(s)	211, 324
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	1 cut(s)	71
MspI	CCGG	3 cut(s)	28, 212, 325
MwoI	GCNNNNNNNGC	1 cut(s)	87
NdeII	GATC	1 cut(s)	229
NlaIII	CATG	6 cut(s)	40, 70, 76, 90, 254, 298
NmeAIII	GCCGAG	1 cut(s)	147
NsbI	TGCGCA	1 cut(s)	91
NspI	RCATGY	2 cut(s)	90, 298
PaeI	GCATGC	1 cut(s)	90
PagI	TCATGA	1 cut(s)	36
PciI	ACATGT	1 cut(s)	294
PfeI	GAWTC	1 cut(s)	158
PinAI	ACCGGT	1 cut(s)	27
PscI	ACATGT	1 cut(s)	294
PsuI	RGATCY	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	164
Sau3AI	GATC	1 cut(s)	229
SetI	ASST	5 cut(s)	137, 144, 171, 189, 211
SmiMI	CAYNNNNRTG	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	4 cut(s)	21, 111, 219, 341
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	138
TasI	AATT	4 cut(s)	21, 111, 219, 341
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	83, 267
XapI	RAATTY	3 cut(s)	21, 111, 341
XceI	RCATGY	2 cut(s)	90, 298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.