Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003749

Physical Location & Seq

Genomic Coordinates Forward (+)

520171 .. 521021

Gene Structure 851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG004600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGACTTGAGTGGCCTTGGTCCGGATGATGTCATCATAAAAAGGGCACTTCATGGTACTTGTCTTTTCGAAGTGGTAAGATTTCTTCCAGAGTATGGGGGTGCACTACCAAATAGATCAGCAGGGGACACATTTCAGGTTGGATCAAAAGTAGTCTCCCGAGCTCCTAGTTCGTCAAGATATCGGTTACATACTGATGATGAATCTGATATCTCATCTTCACCAATCCAATGTCATGATCAGTCACATAATAATGTTGGTTCTACATCAAGAAACTCACCAGTTGGTCATGATCACCCACATCCACATAGAGAAACACATGAACATGGTAATCAGAGCACGCCCTTGAGTGGGAAAAAAATTTTGGTTGCCGAGGATGATGAGCTTTTGAGCTATTTGGCTATGAGAATTCTGTTAAAGGAGGGAGCAACTGTGAAGCTTTGTAAAAATGGAAGAGAAGCTCTAGATGTAATTCGCATAGATCTAGACAACCAAGGGAAACATGAATATGATTTTGTACTAATGGACTGTCAGATGCCAGAAATGGATGGATTTGAAGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTTTGCATTCCGATCATTGCATTAACAGCTCATACACCAGGCGAGGAAACAAGACGGATGTTGGAGGCCGGCATGGATGACTATTTGAGCAAACCCTTGGAAAAGGATCGTCTACTTGAAACAATGGGTAGACTGGTAGGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

247

Amino Acids

27.54

Weight (kDa)

5.85

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	121 - 240	1.5e-24	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003749)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47820 AT1G47820
fragaria_vesca	FvH4_3g25600
rosa_chinensis	RchiOBHm_Chr6g0250611 RchiOBHm_Chr6g0250631 RchiOBHm_Chr6g0250921
rosa_laevigata	RLG00000015515
rosa_multiflora	Rmu_co8191434.1_g000001 Rmu_co8320535.1_g000001 Rmu_sc0003835.1_g000011 Rmu_sc0003953.1_g000001 Rmu_sc0028124.1_g000001
rosa_roxburghii	Rroxscaffold_3G00236710
rosa_rugosa	Rorug01G0235800 Rorug01G0235900 Rorug02G0221600
rosa_samantha	Rh2AG097000 Rh2AG330200 Rh3AG071000 Rh3AG316400 Rh3BG073300 Rh3CG071900 Rh6AG006400 Rh6AG006500 Rh6AG007400 Rh6AG007500 Rh6BG003600 Rh6BG004000 Rh6CG004600 Rh6CG004800 Rh6CG005100 Rh6DG004600 Rh6DG005400 Rh7CG471800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	95
AccI	GTMKAC	2 cut(s)	709, 727
AccIII	TCCGGA	1 cut(s)	22
AclWI	GGATC	2 cut(s)	151, 711
AcsI	RAATTY	2 cut(s)	360, 408
AfaI	GTAC	2 cut(s)	58, 519
AfiI	CCNNNNNNNGG	4 cut(s)	22, 95, 350, 351
AgsI	TTSAA	2 cut(s)	557, 716
AjnI	CCWGG	1 cut(s)	634
AjuI	GAANNNNNNNTTGG	2 cut(s)	347, 379
AluBI	AGCT	6 cut(s)	164, 385, 393, 439, 461, 626
AluI	AGCT	6 cut(s)	164, 385, 393, 439, 461, 626
Alw21I	GWGCWC	3 cut(s)	106, 166, 341
Alw26I	GTCTC	1 cut(s)	160
Alw44I	GTGCAC	1 cut(s)	102
AlwI	GGATC	2 cut(s)	151, 711
Ama87I	CYCGRG	1 cut(s)	159
Aor13HI	TCCGGA	1 cut(s)	22
AoxI	GGCC	2 cut(s)	13, 663
ApaLI	GTGCAC	1 cut(s)	102
ApoI	RAATTY	2 cut(s)	360, 408
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	4 cut(s)	213, 270, 287, 584
AsuII	TTCGAA	1 cut(s)	69
AvaI	CYCGRG	1 cut(s)	159
AvaII	GGWCC	1 cut(s)	20
BaeGI	GKGCMC	2 cut(s)	49, 106
BanII	GRGCYC	1 cut(s)	166
BarI	GAAGNNNNNNTAC	2 cut(s)	69, 101
Bbv12I	GWGCWC	3 cut(s)	106, 166, 341
BccI	CCATC	1 cut(s)	542
BciT130I	CCWGG	1 cut(s)	636
BclI	TGATCA	2 cut(s)	238, 292
BcoDI	GTCTC	1 cut(s)	160
BfaI	CTAG	3 cut(s)	168, 464, 485
BglII	AGATCT	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	636
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	1 cut(s)	20
BmrFI	CCNGG	1 cut(s)	636
BmsI	GCATC	1 cut(s)	525
Bpu14I	TTCGAA	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	28, 367
BsaJI	CCNNGG	4 cut(s)	16, 372, 493, 693
BsaWI	WCCGGW	1 cut(s)	22
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	4 cut(s)	22, 95, 350, 351
Bse118I	RCCGGY	1 cut(s)	665
Bse1I	ACTGG	2 cut(s)	281, 735
Bse3DI	GCAATG	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	22
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	4 cut(s)	16, 372, 493, 693
BseGI	GGATG	6 cut(s)	31, 301, 382, 553, 660, 679
BseLI	CCNNNNNNNGG	4 cut(s)	22, 95, 350, 351
BseMI	GCAATG	1 cut(s)	612
BseNI	ACTGG	2 cut(s)	281, 735
BseSI	GKGCMC	2 cut(s)	49, 106
BshFI	GGCC	2 cut(s)	15, 665
BsiHKAI	GWGCWC	3 cut(s)	106, 166, 341
BsiHKCI	CYCGRG	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	23, 666
BslFI	GGGAC	1 cut(s)	140
BslI	CCNNNNNNNGG	4 cut(s)	22, 95, 350, 351
BsmAI	GTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	140
BsmI	GAATGC	1 cut(s)	603
BsnI	GGCC	2 cut(s)	15, 665
BsoBI	CYCGRG	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	69
Bsp1286I	GDGCHC	4 cut(s)	49, 106, 166, 341
Bsp13I	TCCGGA	1 cut(s)	22
Bsp143I	GATC	7 cut(s)	116, 143, 238, 292, 481, 609, 703
BspANI	GGCC	2 cut(s)	15, 665
BspEI	TCCGGA	1 cut(s)	22
BspHI	TCATGA	2 cut(s)	235, 289
BspPI	GGATC	2 cut(s)	151, 711
BspT104I	TTCGAA	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	612
BsrFI	RCCGGY	1 cut(s)	665
BsrI	ACTGG	2 cut(s)	281, 735
BssAI	RCCGGY	1 cut(s)	665
BssECI	CCNNGG	4 cut(s)	16, 372, 493, 693
BssMI	GATC	7 cut(s)	116, 143, 238, 292, 481, 609, 703
BssT1I	CCWWGG	3 cut(s)	16, 493, 693
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	433, 530
Bst6I	CTCTTC	1 cut(s)	448
BstBI	TTCGAA	1 cut(s)	69
BstC8I	GCNNGC	2 cut(s)	341, 667
BstF5I	GGATG	6 cut(s)	31, 301, 382, 553, 660, 679
BstKTI	GATC	7 cut(s)	119, 146, 241, 295, 484, 612, 706
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	7 cut(s)	116, 143, 238, 292, 481, 609, 703
BstMWI	GCNNNNNNNGC	1 cut(s)	623
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	634
BstSLI	GKGCMC	2 cut(s)	49, 106
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BsuRI	GGCC	2 cut(s)	15, 665
BtsCI	GGATG	6 cut(s)	31, 301, 382, 553, 660, 679
Cac8I	GCNNGC	2 cut(s)	341, 667
CciI	TCATGA	2 cut(s)	235, 289
Cfr10I	RCCGGY	1 cut(s)	665
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	57, 518
CviAII	CATG	8 cut(s)	53, 236, 290, 320, 326, 503, 596, 670
CviJI	RGCY	9 cut(s)	15, 164, 385, 393, 401, 439, 461, 626, 665
CviKI_1	RGCY	9 cut(s)	15, 164, 385, 393, 401, 439, 461, 626, 665
CviQI	GTAC	2 cut(s)	57, 518
DpnI	GATC	7 cut(s)	118, 145, 240, 294, 483, 611, 705
DpnII	GATC	7 cut(s)	116, 143, 238, 292, 481, 609, 703
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
Ecl136II	GAGCTC	1 cut(s)	164
Eco130I	CCWWGG	3 cut(s)	16, 493, 693
Eco24I	GRGCYC	1 cut(s)	166
Eco32I	GATATC	2 cut(s)	182, 211
Eco47I	GGWCC	1 cut(s)	20
Eco53kI	GAGCTC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	164
EcoRI	GAATTC	1 cut(s)	408
EcoRII	CCWGG	1 cut(s)	634
EcoRV	GATATC	2 cut(s)	182, 211
EcoT14I	CCWWGG	3 cut(s)	16, 493, 693
EcoT38I	GRGCYC	1 cut(s)	166
ErhI	CCWWGG	3 cut(s)	16, 493, 693
FaeI	CATG	8 cut(s)	56, 239, 293, 323, 329, 506, 599, 673
FaqI	GGGAC	1 cut(s)	140
FatI	CATG	8 cut(s)	52, 235, 289, 319, 325, 502, 595, 669
FbaI	TGATCA	2 cut(s)	238, 292
FblI	GTMKAC	2 cut(s)	709, 727
FokI	GGATG	6 cut(s)	38, 288, 389, 560, 667, 686
FriOI	GRGCYC	1 cut(s)	166
FspBI	CTAG	3 cut(s)	168, 464, 485
HaeIII	GGCC	2 cut(s)	15, 665
HapII	CCGG	2 cut(s)	23, 666
Hin1II	CATG	8 cut(s)	56, 239, 293, 323, 329, 506, 599, 673
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	1 cut(s)	203
HpaII	CCGG	2 cut(s)	23, 666
HphI	GGTGA	4 cut(s)	213, 270, 287, 584
Hpy166II	GTNNAC	3 cut(s)	104, 710, 728
Hpy188I	TCNGA	4 cut(s)	208, 336, 534, 609
Hpy188III	TCNNGA	9 cut(s)	23, 89, 159, 177, 236, 270, 290, 464, 485
Hpy8I	GTNNAC	3 cut(s)	104, 710, 728
HpyCH4III	ACNGT	2 cut(s)	433, 530
HpyCH4V	TGCA	3 cut(s)	104, 603, 617
HpyF10VI	GCNNNNNNNGC	1 cut(s)	623
Hsp92II	CATG	8 cut(s)	56, 239, 293, 323, 329, 506, 599, 673
Kpn2I	TCCGGA	1 cut(s)	22
KroI	GCCGGC	1 cut(s)	665
KroNI	GCCGGC	1 cut(s)	667
Ksp22I	TGATCA	2 cut(s)	238, 292
Kzo9I	GATC	7 cut(s)	116, 143, 238, 292, 481, 609, 703
LmnI	GCTCC	2 cut(s)	169, 425
LweI	GCATC	1 cut(s)	525
MaeI	CTAG	3 cut(s)	168, 464, 485
MaeIII	GTNAC	2 cut(s)	186, 243
MalI	GATC	7 cut(s)	118, 145, 240, 294, 483, 611, 705
MboI	GATC	7 cut(s)	116, 143, 238, 292, 481, 609, 703
MboII	GAAGA	3 cut(s)	77, 210, 465
MflI	RGATCY	1 cut(s)	481
MhlI	GDGCHC	4 cut(s)	49, 106, 166, 341
MluCI	AATT	3 cut(s)	360, 408, 471
MmeI	TCCRAC	2 cut(s)	121, 639
MnlI	CCTC	4 cut(s)	367, 415, 634, 655
MroI	TCCGGA	1 cut(s)	22
MroNI	GCCGGC	1 cut(s)	665
MseI	TTAA	2 cut(s)	416, 620
MslI	CAYNNNNRTG	4 cut(s)	195, 252, 324, 507
MspI	CCGG	2 cut(s)	23, 666
MspR9I	CCNGG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	1 cut(s)	623
NaeI	GCCGGC	1 cut(s)	667
NdeII	GATC	7 cut(s)	116, 143, 238, 292, 481, 609, 703
NgoMIV	GCCGGC	1 cut(s)	665
NlaIII	CATG	8 cut(s)	56, 239, 293, 323, 329, 506, 599, 673
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	243
NspV	TTCGAA	1 cut(s)	69
PagI	TCATGA	2 cut(s)	235, 289
PctI	GAATGC	1 cut(s)	603
PdiI	GCCGGC	1 cut(s)	667
PfeI	GAWTC	1 cut(s)	203
PflMI	CCANNNNNTGG	1 cut(s)	95
Psp124BI	GAGCTC	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	2 cut(s)	58, 519
RsaNI	GTAC	2 cut(s)	57, 518
RseI	CAYNNNNRTG	4 cut(s)	195, 252, 324, 507
SacI	GAGCTC	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	416, 620
Sau3AI	GATC	7 cut(s)	116, 143, 238, 292, 481, 609, 703
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	4 cut(s)	49, 106, 166, 341
SetI	ASST	7 cut(s)	141, 166, 387, 395, 441, 463, 628
SfaNI	GCATC	1 cut(s)	525
SfuI	TTCGAA	1 cut(s)	69
SinI	GGWCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	4 cut(s)	195, 252, 324, 507
SmlI	CTYRAG	2 cut(s)	7, 346
SmoI	CTYRAG	2 cut(s)	7, 346
Sse9I	AATT	3 cut(s)	360, 408, 471
SspMI	CTAG	3 cut(s)	168, 464, 485
SstI	GAGCTC	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	3 cut(s)	16, 493, 693
TaaI	ACNGT	2 cut(s)	433, 530
TaqI	TCGA	1 cut(s)	69
TasI	AATT	3 cut(s)	360, 408, 471
TatI	WGTACW	1 cut(s)	517
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	416, 620
Tru9I	TTAA	2 cut(s)	416, 620
TseFI	GTSAC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	4 cut(s)	41, 216, 336, 519
TspGWI	ACGGA	1 cut(s)	667
Van91I	CCANNNNNTGG	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	102
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	2 cut(s)	360, 408
XbaI	TCTAGA	2 cut(s)	463, 484
XmiI	GTMKAC	2 cut(s)	709, 727
XspI	CTAG	3 cut(s)	168, 464, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.