FvH4_3g28680

Serine threonine-protein kinase ATM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001132
Physical Location & Seq
Forward (+)
21645550 .. 21652095
6546 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28680.t1

Sequence Viewer

Length: 2772 bp
ATGGCTGAAGATGAGAAAATGGTTGAAGAGTTTAGGAACGAATGTAAAGCTTCGGAATTGGGTGCTCAGAGAGAAGATGAGGGAATGTTGGAAGATGGTGGGGTTGAGAGGAAGGTTGAAGATGGTATGAATGAGGCTGAACCATTCGAATCAAGTCGGAGAGAAGATGGAGTTGGAAATGATGAGCTGGAGAAGGGCGAAGATGGTCGACATTATGAGTTCTGTGTGGGTGATATTGTATGGGTTGAGACGAGACTGAAGACATGGTGGCCTGGCAGAATTCATGATCCTGTAGATGCATCCAAGCTGGGGATGGTTAGTGATCAAGAAGGCTATTTACTAGTTGGCTACTTTGGGATGGGACATGTTGCTTGGTGCGGTCGACACCAACTGAAGCCTTTCGTGCAGTTCTTTGAGCAGATTTCAGGGAAAAGCATGGCTAGGATTTTCGTTAGAGCTGTAGAGAAAGCCCTTGAAGAGTTTGGTGGCCGTGTTAGATTGAATATGACTTGTGCCTGTGTATTGAAACAAAATCGACTGTCGGTTGATGATGCAGCGTTTGAGGAAGGAGTTACAGTTCCTGACCGCAACTGTGGTGAACTTGGTGAATTATCAGTTACTCATTTTGATTCTGTAGTGTTCTTGTCACATCTGAAAAGTCTTGCACTGGTTGTTTCCAAAGTTGGCATACTTGATTTTATTGTTATGCAGAATCGATTATCTGTCTTCTATAGCTCCACAGGGCACTATCAGCTTCCTATGCATCTACTTCAGGAAGGAAATGATGCTGGAAGTGGTGCAGATGGAACAATGCTGAACCAAACAGAGGAAATTGTTTTTCATCAAGAACAGAATGATGATAATGAAGGTTTTGCAAAGGTTTTTGGTGGGGGTAGTGCTGATAGAACTTCCATCTCAAGTTCAAAGGTCAGGAAGAGAAAGATGAAGTGGGGTTCTGAAATTGAAGAGACTGGCCTCCTAATATCACCAACAGTGAAAGAGAGAAATGCTTCCGGTATAGGATATGGTGATAGCAGAAATGAAGGAGTGACTGAAACTGGCGCAGAGTCTAGAGAGCGGAAAAGGAGTAGGTACTTGTCTTACCCATACATAAACTTGGGGCAGATAGGACCATCTGCAGGTATTGATGATGGACAACCTTCAAATTTTAAAAGCCCTGGCGATAAGTTCTGGAGGAAATGGTATAAGAGGTTTACCAGTGTGAGTAACATATCTTGTAATTCATATTTGAAAAATTCATCTTCTGCTGAGTTGCTTTCTGAATTCTGCTCTGCTGCCATCAACTGCCAGTATCCATTTGAAAATAAAGCATTTGATTCAGTTGCTTGGTTTATATCTAACTTCAGGATATCTGTATTTCATGACGAGCCTATTTGTGAAACCTACAGTAAGAACATGGCTGGTCAGGATGAGGATAAATATGCTGAATCTTGCCTGTTGGAAAATGTTGACCAGATTGAGGGTAAATCTGAGCCAAAGAAAAGAAGTAAAAAGGCTGTTTCGAAGAATGCAGAGGGTGAAGACGCTGCCAACACCTCAAGTTTAGTTCAAAGCCCTGCAACTGCTGTACAGGGTATGAATGTAAACATTGGCAAGAAAAGGGGACGACCAAAGTTAGGGAAATCCAAGACTAAATCTCTTTCTGGGATGCCAGATATCAATACCAGCATTGCCCCTGATGGGCAAAAGGTACAAGATTATTTAGCTGTTGGACCTCTGGTGCCCTGTGATAAGCTTGAACAAAAGAAAAGAGAGAAGGCAGAACGCGCAAGTCAAGCTAGTTTGCAGACTAAACAAACAATTGGTATACCTGATTTGAATGGTAACACTGTTATACCTACCGTTCTGGTTAATTATCAACAGAGCATTGGTCATGCTGCTATTGTAGGTAACGTTAAGCGTGAAAAGAGATTGGGGAATGAAGCTGCTTCAGAGCATTCAAAATCCAATGTGGCTCCTGGCTTAGTAGATGCCAATGGAAACAATTTGAAACCTGGTACATTGGTTGTTGATCTGGGGATTCCTGCTCCAGCTTTTCCATGCCGGGACTCTAACCAGGTTACCGGCTTGCTCTCAGCTGTAAGTAAACCTGCCCCAAAGAAGAGAAAGAGAAAGGAGAAAGTAAATCTCGGGATTCCTGTACAAGCCGACAGTGTTCCAGATTTGAATGGAAATGGTACTGAATGCCTTGCACCTCCAAGTAAACCAGAGCGGAAGAGGAGGAGGAGAAAAGGAGAAGCTCTAGCAACTGCTCTCCTCTTGAGCTTCGCCCCAGGAGTTCCAATGCCTTCAAAAGATGATCTGATTTCAACATTTTGTAGGTTTGGACCCTTGAAAGAATCGGAGACACAGTTCTTAAAAGATCCTAGTAGTGCACAGGTTGTGTTCATGGAAAGTGCTGATGCTGGAGAAGCATTTCAGAGTTTAGAGAAGAACAACCCTTTTGGCACAAACCTTGTTGGTTACAAGCGCTTTAATCTTCCATCAGTTTCCAAGGTGTTGGCCACAAGCCTAGCTTCTCCGCCTACAAAGAGATTGCTGATTCCTGTACAATCACCTGCTAAAGGACCTTGCCTTGACGTCATAAGGCAGAATCTTCAGATGATGACCTCAATGCTGGAAAAGTCGGGTGATACTCTTTCTCCAGAGATGAGAGCCAAGCTGGAGTGTGAAATAAAAGGCCTCCTACAGAAGGATCACGAAGATAAAGATTGCCGAGTGAATAACCAAAGACTAGAGCAGAATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

924

Amino Acids

101.56

Weight (kDa)

6.34

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 77 - 161 1.5e-10 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2587
AatII GACGTC 1 cut(s) 2604
Acc36I ACCTGC 3 cut(s) 1130, 2119, 2587
AccB1I GGYRCC 1 cut(s) 1741
AccBSI CCGCTC 2 cut(s) 1078, 2233
AccI GTMKAC 3 cut(s) 208, 382, 1828
AccII CGCG 1 cut(s) 1788
AciI CCGC 5 cut(s) 378, 586, 1078, 2233, 2543
AclI AACGTT 1 cut(s) 1914
AclWI GGATC 3 cut(s) 281, 2378, 2724
AcoI YGGCCR 2 cut(s) 487, 2523
AcsI RAATTY 4 cut(s) 279, 1165, 1255, 1283
AcuI CTGAAG 7 cut(s) 27, 278, 413, 755, 1348, 1935, 2603
AcyI GRCGYC 1 cut(s) 2601
AfaI GTAC 7 cut(s) 1094, 1590, 1713, 2020, 2163, 2200, 2571
AfeI AGCGCT 1 cut(s) 2492
AfiI CCNNNNNNNGG 8 cut(s) 309, 826, 1139, 1480, 1637, 1701, 2585, 2713
AflIII ACRYGT 1 cut(s) 364
AhlI ACTAGT 1 cut(s) 340
AjnI CCWGG 6 cut(s) 271, 1177, 1978, 2014, 2076, 2293
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AloI GAACNNNNNNTCC 4 cut(s) 561, 593, 2357, 2389
Alw21I GWGCWC 2 cut(s) 67, 2398
Alw26I GTCTC 4 cut(s) 242, 247, 962, 2360
Alw44I GTGCAC 1 cut(s) 2394
AlwI GGATC 3 cut(s) 281, 2378, 2724
AlwNI CAGNNNCTG 1 cut(s) 581
Ama87I CYCGRG 1 cut(s) 2150
Aor51HI AGCGCT 1 cut(s) 2492
AoxI GGCC 5 cut(s) 269, 487, 973, 2523, 2701
ApaLI GTGCAC 1 cut(s) 2394
ApeKI GCWGC 5 cut(s) 554, 1295, 1547, 1898, 1946
ApoI RAATTY 4 cut(s) 279, 1165, 1255, 1283
Asp700I GAANNNNTTC 3 cut(s) 398, 1009, 2436
AspLEI GCGC 3 cut(s) 1064, 1790, 2493
AspS9I GGNCC 4 cut(s) 1130, 1733, 2348, 2588
AsuC2I CCSGG 1 cut(s) 2066
AsuHPI GGTGA 8 cut(s) 242, 608, 617, 978, 1040, 1550, 2568, 2663
AsuII TTCGAA 2 cut(s) 147, 1523
AvaI CYCGRG 1 cut(s) 2150
AvaII GGWCC 4 cut(s) 1130, 1733, 2348, 2588
BaeGI GKGCMC 3 cut(s) 747, 1746, 2398
BaeI ACNNNNGTAYC 2 cut(s) 2010, 2043
BalI TGGCCA 1 cut(s) 2525
BanI GGYRCC 1 cut(s) 1741
BarI GAAGNNNNNNTAC 2 cut(s) 321, 353
BbsI GAAGAC 3 cut(s) 266, 718, 1548
Bbv12I GWGCWC 2 cut(s) 67, 2398
BbvI GCAGC 5 cut(s) 566, 1282, 1534, 1885, 1933
BceAI ACGGC 1 cut(s) 474
BciT130I CCWGG 6 cut(s) 273, 1179, 1980, 2016, 2078, 2295
BciVI GTATCC 1 cut(s) 1323
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 1 cut(s) 2066
BcoDI GTCTC 4 cut(s) 242, 247, 962, 2360
BcuI ACTAGT 1 cut(s) 340
BfaI CTAG 8 cut(s) 341, 441, 1071, 1800, 2264, 2388, 2534, 2756
BfmI CTRYAG 7 cut(s) 291, 459, 633, 730, 1137, 1405, 2708
BfoI RGCGCY 1 cut(s) 2494
BfuAI ACCTGC 3 cut(s) 1130, 2119, 2587
BfuI GTATCC 1 cut(s) 1323
BisI GCNGC 5 cut(s) 555, 1296, 1548, 1899, 1947
BlsI GCNGC 5 cut(s) 556, 1297, 1549, 1900, 1948
Bme1390I CCNGG 7 cut(s) 273, 1179, 1980, 2016, 2066, 2078, 2295
Bme18I GGWCC 4 cut(s) 1130, 1733, 2348, 2588
BmeT110I CYCGRG 1 cut(s) 2150
BmgT120I GGNCC 4 cut(s) 1130, 1733, 2348, 2588
BmiI GGNNCC 3 cut(s) 1743, 1977, 2350
BmrFI CCNGG 7 cut(s) 273, 1179, 1980, 2016, 2066, 2078, 2295
BmsI GCATC 8 cut(s) 286, 308, 541, 772, 775, 1659, 1981, 2413
BpiI GAAGAC 3 cut(s) 266, 718, 1548
BpmI CTGGAG 6 cut(s) 209, 1213, 2034, 2448, 2649, 2705
Bpu14I TTCGAA 2 cut(s) 147, 1523
BpuEI CTTGAG 3 cut(s) 901, 1543, 2302
BpuMI CCSGG 1 cut(s) 2066
Bsa29I ATCGAT 1 cut(s) 715
BsaHI GRCGYC 1 cut(s) 2601
BsaJI CCNNGG 3 cut(s) 1177, 2293, 2514
BsaWI WCCGGW 1 cut(s) 1013
BsaXI ACNNNNNCTCC 6 cut(s) 561, 591, 2357, 2387, 2647, 2677
Bsc4I CCNNNNNNNGG 8 cut(s) 309, 826, 1139, 1480, 1637, 1701, 2585, 2713
Bse118I RCCGGY 1 cut(s) 2084
Bse1I ACTGG 5 cut(s) 672, 976, 1063, 1218, 1309
Bse3DI GCAATG 1 cut(s) 1689
BseBI CCWGG 6 cut(s) 273, 1179, 1980, 2016, 2078, 2295
BseCI ATCGAT 1 cut(s) 715
BseDI CCNNGG 3 cut(s) 1177, 2293, 2514
BseGI GGATG 5 cut(s) 299, 318, 363, 1435, 1674
BseLI CCNNNNNNNGG 8 cut(s) 309, 826, 1139, 1480, 1637, 1701, 2585, 2713
BseMI GCAATG 1 cut(s) 1689
BseMII CTCAG 4 cut(s) 80, 1260, 1482, 2109
BseNI ACTGG 5 cut(s) 672, 976, 1063, 1218, 1309
BseRI GAGGAG 4 cut(s) 2254, 2257, 2260, 2267
BseSI GKGCMC 3 cut(s) 747, 1746, 2398
BseXI GCAGC 5 cut(s) 566, 1282, 1534, 1885, 1933
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 2 cut(s) 425, 819
Bsh1236I CGCG 1 cut(s) 1788
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 5 cut(s) 271, 489, 975, 2525, 2703
BshNI GGYRCC 1 cut(s) 1741
BshVI ATCGAT 1 cut(s) 715
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 2 cut(s) 67, 2398
BsiHKCI CYCGRG 1 cut(s) 2150
BsiSI CCGG 3 cut(s) 1014, 2065, 2085
BslFI GGGAC 3 cut(s) 375, 1638, 2081
BslI CCNNNNNNNGG 8 cut(s) 309, 826, 1139, 1480, 1637, 1701, 2585, 2713
BsmAI GTCTC 4 cut(s) 242, 247, 962, 2360
BsmBI CGTCTC 1 cut(s) 242
BsmFI GGGAC 3 cut(s) 375, 1638, 2081
BsmI GAATGC 3 cut(s) 1534, 1957, 2210
BsnI GGCC 5 cut(s) 271, 489, 975, 2525, 2703
BsoBI CYCGRG 1 cut(s) 2150
Bsp119I TTCGAA 2 cut(s) 147, 1523
Bsp1286I GDGCHC 4 cut(s) 67, 747, 1746, 2398
Bsp1407I TGTACA 3 cut(s) 1588, 2161, 2569
Bsp143I GATC 6 cut(s) 286, 322, 2032, 2320, 2383, 2716
BspACI CCGC 5 cut(s) 378, 586, 1078, 2233, 2543
BspANI GGCC 5 cut(s) 271, 489, 975, 2525, 2703
BspCNI CTCAG 4 cut(s) 79, 1261, 1483, 2108
BspDI ATCGAT 1 cut(s) 715
BspFNI CGCG 1 cut(s) 1788
BspHI TCATGA 2 cut(s) 283, 1381
BspLI GGNNCC 3 cut(s) 1743, 1977, 2350
BspMAI CTGCAG 1 cut(s) 1141
BspMI ACCTGC 3 cut(s) 1130, 2119, 2587
BspPI GGATC 3 cut(s) 281, 2378, 2724
BspT104I TTCGAA 2 cut(s) 147, 1523
BspT107I GGYRCC 1 cut(s) 1741
BsrBI CCGCTC 2 cut(s) 1078, 2233
BsrDI GCAATG 1 cut(s) 1689
BsrFI RCCGGY 1 cut(s) 2084
BsrGI TGTACA 3 cut(s) 1588, 2161, 2569
BsrI ACTGG 5 cut(s) 672, 976, 1063, 1218, 1309
BssAI RCCGGY 1 cut(s) 2084
BssECI CCNNGG 3 cut(s) 1177, 2293, 2514
BssMI GATC 6 cut(s) 286, 322, 2032, 2320, 2383, 2716
BssNAI GTATAC 1 cut(s) 1829
BssNI GRCGYC 1 cut(s) 2601
BssT1I CCWWGG 1 cut(s) 2514
Bst1107I GTATAC 1 cut(s) 1829
Bst2UI CCWGG 6 cut(s) 273, 1179, 1980, 2016, 2078, 2295
Bst4CI ACNGT 9 cut(s) 540, 577, 593, 994, 1409, 1852, 1864, 2174, 2373
Bst6I CTCTTC 6 cut(s) 21, 471, 929, 960, 2117, 2231
BstACI GRCGYC 1 cut(s) 2601
BstAUI TGTACA 3 cut(s) 1588, 2161, 2569
BstBI TTCGAA 2 cut(s) 147, 1523
BstC8I GCNNGC 1 cut(s) 2090
BstDEI CTNAG 5 cut(s) 66, 1269, 1491, 1984, 2095
BstEII GGTNACC 1 cut(s) 2080
BstENI CCTNNNNNAGG 2 cut(s) 2583, 2711
BstF5I GGATG 5 cut(s) 299, 318, 363, 1435, 1674
BstFNI CGCG 1 cut(s) 1788
BstH2I RGCGCY 1 cut(s) 2494
BstHHI GCGC 3 cut(s) 1064, 1790, 2493
BstKTI GATC 6 cut(s) 289, 325, 2035, 2323, 2386, 2719
BstMAI GTCTC 4 cut(s) 242, 247, 962, 2360
BstMBI GATC 6 cut(s) 286, 322, 2032, 2320, 2383, 2716
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 6 cut(s) 403, 751, 760, 1787, 1796, 2432
BstNI CCWGG 6 cut(s) 273, 1179, 1980, 2016, 2078, 2295
BstNSI RCATGY 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 2080
BstSCI CCNGG 7 cut(s) 271, 1177, 1978, 2014, 2064, 2076, 2293
BstSFI CTRYAG 7 cut(s) 291, 459, 633, 730, 1137, 1405, 2708
BstSLI GKGCMC 3 cut(s) 747, 1746, 2398
BstUI CGCG 1 cut(s) 1788
BstV1I GCAGC 5 cut(s) 566, 1282, 1534, 1885, 1933
BstV2I GAAGAC 3 cut(s) 266, 718, 1548
BstX2I RGATCY 1 cut(s) 2383
BstXI CCANNNNNNTGG 1 cut(s) 2521
BstYI RGATCY 1 cut(s) 2383
BstZ17I GTATAC 1 cut(s) 1829
Bsu15I ATCGAT 1 cut(s) 715
BsuI GTATCC 1 cut(s) 1323
BsuRI GGCC 5 cut(s) 271, 489, 975, 2525, 2703
BsuTUI ATCGAT 1 cut(s) 715
BtsCI GGATG 5 cut(s) 299, 318, 363, 1435, 1674
BtsIMutI CAGTG 5 cut(s) 665, 999, 1225, 1848, 2179
BveI ACCTGC 3 cut(s) 1130, 2119, 2587
Cac8I GCNNGC 1 cut(s) 2090
CaiI CAGNNNCTG 1 cut(s) 581
CciI TCATGA 2 cut(s) 283, 1381
CfoI GCGC 3 cut(s) 1064, 1790, 2493
Cfr10I RCCGGY 1 cut(s) 2084
Cfr13I GGNCC 4 cut(s) 1130, 1733, 2348, 2588
ClaI ATCGAT 1 cut(s) 715
CseI GACGC 1 cut(s) 1553
CsiI ACCWGGT 2 cut(s) 2014, 2076
Csp6I GTAC 7 cut(s) 1093, 1589, 1712, 2019, 2162, 2199, 2570
CviAII CATG 9 cut(s) 264, 284, 365, 436, 1382, 1417, 1895, 2061, 2410
CviQI GTAC 7 cut(s) 1093, 1589, 1712, 2019, 2162, 2199, 2570
DdeI CTNAG 5 cut(s) 66, 1269, 1491, 1984, 2095
DpnI GATC 6 cut(s) 288, 324, 2034, 2322, 2385, 2718
DpnII GATC 6 cut(s) 286, 322, 2032, 2320, 2383, 2716
DraI TTTAAA 1 cut(s) 1171
EaeI YGGCCR 2 cut(s) 487, 2523
Eam1104I CTCTTC 6 cut(s) 21, 471, 929, 960, 2117, 2231
EarI CTCTTC 6 cut(s) 21, 471, 929, 960, 2117, 2231
EciI GGCGGA 1 cut(s) 2532
Eco130I CCWWGG 1 cut(s) 2514
Eco147I AGGCCT 1 cut(s) 2703
Eco32I GATATC 2 cut(s) 1371, 1678
Eco47I GGWCC 4 cut(s) 1130, 1733, 2348, 2588
Eco47III AGCGCT 1 cut(s) 2492
Eco57I CTGAAG 7 cut(s) 27, 278, 413, 755, 1348, 1935, 2603
Eco88I CYCGRG 1 cut(s) 2150
Eco91I GGTNACC 1 cut(s) 2080
EcoNI CCTNNNNNAGG 2 cut(s) 2583, 2711
EcoO109I RGGNCCY 1 cut(s) 2588
EcoO65I GGTNACC 1 cut(s) 2080
EcoRI GAATTC 2 cut(s) 279, 1283
EcoRII CCWGG 6 cut(s) 271, 1177, 1978, 2014, 2076, 2293
EcoRV GATATC 2 cut(s) 1371, 1678
EcoT14I CCWWGG 1 cut(s) 2514
EcoT22I ATGCAT 2 cut(s) 301, 765
ErhI CCWWGG 1 cut(s) 2514
Esp3I CGTCTC 1 cut(s) 242
FaeI CATG 9 cut(s) 267, 287, 368, 439, 1385, 1420, 1898, 2064, 2413
FalI AAGNNNNNCTT 2 cut(s) 2521, 2553
FaqI GGGAC 3 cut(s) 375, 1638, 2081
FatI CATG 9 cut(s) 263, 283, 364, 435, 1381, 1416, 1894, 2060, 2409
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 3 cut(s) 208, 382, 1828
Fnu4HI GCNGC 5 cut(s) 555, 1296, 1548, 1899, 1947
FokI GGATG 5 cut(s) 286, 325, 370, 1442, 1681
Fsp4HI GCNGC 5 cut(s) 555, 1296, 1548, 1899, 1947
FspBI CTAG 8 cut(s) 341, 441, 1071, 1800, 2264, 2388, 2534, 2756
GlaI GCGC 3 cut(s) 1063, 1789, 2492
GluI GCNGC 5 cut(s) 555, 1296, 1548, 1899, 1947
GsaI CCCAGC 1 cut(s) 311
GsuI CTGGAG 6 cut(s) 209, 1213, 2034, 2448, 2649, 2705
HaeII RGCGCY 1 cut(s) 2494
HaeIII GGCC 5 cut(s) 271, 489, 975, 2525, 2703
HapII CCGG 3 cut(s) 1014, 2065, 2085
HgaI GACGC 1 cut(s) 1553
HhaI GCGC 3 cut(s) 1064, 1790, 2493
Hin1I GRCGYC 1 cut(s) 2601
Hin1II CATG 9 cut(s) 267, 287, 368, 439, 1385, 1420, 1898, 2064, 2413
Hin6I GCGC 3 cut(s) 1062, 1788, 2491
HinP1I GCGC 3 cut(s) 1062, 1788, 2491
HincII GTYRAC 3 cut(s) 209, 383, 1471
HindII GTYRAC 3 cut(s) 209, 383, 1471
HindIII AAGCTT 2 cut(s) 48, 1754
HpaII CCGG 3 cut(s) 1014, 2065, 2085
HphI GGTGA 8 cut(s) 242, 608, 617, 978, 1040, 1550, 2568, 2663
HpyCH4III ACNGT 9 cut(s) 540, 577, 593, 994, 1409, 1852, 1864, 2174, 2373
HpyCH4IV ACGT 2 cut(s) 1914, 2601
HpyF10VI GCNNNNNNNGC 6 cut(s) 403, 751, 760, 1787, 1796, 2432
HpyF3I CTNAG 5 cut(s) 66, 1269, 1491, 1984, 2095
HpySE526I ACGT 2 cut(s) 1914, 2601
Hsp92I GRCGYC 1 cut(s) 2601
Hsp92II CATG 9 cut(s) 267, 287, 368, 439, 1385, 1420, 1898, 2064, 2413
HspAI GCGC 3 cut(s) 1062, 1788, 2491
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 6 cut(s) 286, 322, 2032, 2320, 2383, 2716
LmnI GCTCC 3 cut(s) 740, 1981, 2053
Lsp1109I GCAGC 5 cut(s) 566, 1282, 1534, 1885, 1933
LweI GCATC 8 cut(s) 286, 308, 541, 772, 775, 1659, 1981, 2413
MabI ACCWGGT 2 cut(s) 2014, 2076
MaeI CTAG 8 cut(s) 341, 441, 1071, 1800, 2264, 2388, 2534, 2756
MaeII ACGT 2 cut(s) 1914, 2601
MaeIII GTNAC 9 cut(s) 571, 616, 645, 1048, 1226, 1844, 1910, 2080, 2483
MalI GATC 6 cut(s) 288, 324, 2034, 2322, 2385, 2718
MbiI CCGCTC 2 cut(s) 1078, 2233
MboI GATC 6 cut(s) 286, 322, 2032, 2320, 2383, 2716
MfeI CAATTG 1 cut(s) 1821
MflI RGATCY 1 cut(s) 2383
MhlI GDGCHC 4 cut(s) 67, 747, 1746, 2398
MlsI TGGCCA 1 cut(s) 2525
MluNI TGGCCA 1 cut(s) 2525
MlyI GAGTC 2 cut(s) 1076, 2063
MmeI TCCRAC 5 cut(s) 69, 137, 154, 1440, 1711
Mox20I TGGCCA 1 cut(s) 2525
Mph1103I ATGCAT 2 cut(s) 301, 765
MroXI GAANNNNTTC 3 cut(s) 398, 1009, 2436
MscI TGGCCA 1 cut(s) 2525
MseI TTAA 5 cut(s) 1170, 1872, 1917, 2378, 2496
Msp20I TGGCCA 1 cut(s) 2525
MspA1I CMGCKG 1 cut(s) 2099
MspI CCGG 3 cut(s) 1014, 2065, 2085
MspR9I CCNGG 7 cut(s) 273, 1179, 1980, 2016, 2066, 2078, 2295
MunI CAATTG 1 cut(s) 1821
Mva1269I GAATGC 3 cut(s) 1534, 1957, 2210
MvaI CCWGG 6 cut(s) 273, 1179, 1980, 2016, 2078, 2295
MvnI CGCG 1 cut(s) 1788
MwoI GCNNNNNNNGC 6 cut(s) 403, 751, 760, 1787, 1796, 2432
NciI CCSGG 1 cut(s) 2066
NdeII GATC 6 cut(s) 286, 322, 2032, 2320, 2383, 2716
NlaIII CATG 9 cut(s) 267, 287, 368, 439, 1385, 1420, 1898, 2064, 2413
NlaIV GGNNCC 3 cut(s) 1743, 1977, 2350
NmeAIII GCCGAG 1 cut(s) 2762
NmuCI GTSAC 2 cut(s) 645, 1048
NsiI ATGCAT 2 cut(s) 301, 765
NspI RCATGY 1 cut(s) 368
NspV TTCGAA 2 cut(s) 147, 1523
PagI TCATGA 2 cut(s) 283, 1381
PaqCI CACCTGC 1 cut(s) 2587
PceI AGGCCT 1 cut(s) 2703
PciI ACATGT 1 cut(s) 364
PctI GAATGC 3 cut(s) 1534, 1957, 2210
PdmI GAANNNNTTC 3 cut(s) 398, 1009, 2436
PkrI GCNGC 5 cut(s) 556, 1297, 1549, 1900, 1948
PleI GAGTC 2 cut(s) 1075, 2063
PpsI GAGTC 2 cut(s) 1075, 2063
PpuMI RGGWCCY 1 cut(s) 2588
PscI ACATGT 1 cut(s) 364
Psp1406I AACGTT 1 cut(s) 1914
Psp5II RGGWCCY 1 cut(s) 2588
Psp6I CCWGG 6 cut(s) 271, 1177, 1978, 2014, 2076, 2293
PspEI GGTNACC 1 cut(s) 2080
PspFI CCCAGC 1 cut(s) 307
PspGI CCWGG 6 cut(s) 271, 1177, 1978, 2014, 2076, 2293
PspN4I GGNNCC 3 cut(s) 1743, 1977, 2350
PspPI GGNCC 4 cut(s) 1130, 1733, 2348, 2588
PspPPI RGGWCCY 1 cut(s) 2588
PstI CTGCAG 1 cut(s) 1141
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 1 cut(s) 2383
PvuII CAGCTG 1 cut(s) 2099
RsaI GTAC 7 cut(s) 1094, 1590, 1713, 2020, 2163, 2200, 2571
RsaNI GTAC 7 cut(s) 1093, 1589, 1712, 2019, 2162, 2199, 2570
SalI GTCGAC 2 cut(s) 207, 381
SaqAI TTAA 5 cut(s) 1170, 1872, 1917, 2378, 2496
SatI GCNGC 5 cut(s) 555, 1296, 1548, 1899, 1947
Sau3AI GATC 6 cut(s) 286, 322, 2032, 2320, 2383, 2716
Sau96I GGNCC 4 cut(s) 1130, 1733, 2348, 2588
SchI GAGTC 2 cut(s) 1076, 2063
ScrFI CCNGG 7 cut(s) 273, 1179, 1980, 2016, 2066, 2078, 2295
SduI GDGCHC 4 cut(s) 67, 747, 1746, 2398
SexAI ACCWGGT 2 cut(s) 2014, 2076
SfaNI GCATC 8 cut(s) 286, 308, 541, 772, 775, 1659, 1981, 2413
SfcI CTRYAG 7 cut(s) 291, 459, 633, 730, 1137, 1405, 2708
SfuI TTCGAA 2 cut(s) 147, 1523
SinI GGWCC 4 cut(s) 1130, 1733, 2348, 2588
SmlI CTYRAG 3 cut(s) 916, 1558, 2281
SmoI CTYRAG 3 cut(s) 916, 1558, 2281
SpeI ACTAGT 1 cut(s) 340
SseBI AGGCCT 1 cut(s) 2703
SsiI CCGC 5 cut(s) 378, 586, 1078, 2233, 2543
SspMI CTAG 8 cut(s) 341, 441, 1071, 1800, 2264, 2388, 2534, 2756
StuI AGGCCT 1 cut(s) 2703
StyD4I CCNGG 7 cut(s) 271, 1177, 1978, 2014, 2064, 2076, 2293
StyI CCWWGG 1 cut(s) 2514
TaaI ACNGT 9 cut(s) 540, 577, 593, 994, 1409, 1852, 1864, 2174, 2373
TaiI ACGT 2 cut(s) 1917, 2604
TaqI TCGA 6 cut(s) 147, 208, 382, 535, 715, 1523
TatI WGTACW 3 cut(s) 1588, 2161, 2569
Tru1I TTAA 5 cut(s) 1170, 1872, 1917, 2378, 2496
Tru9I TTAA 5 cut(s) 1170, 1872, 1917, 2378, 2496
TscAI CASTG 5 cut(s) 672, 999, 1225, 1855, 2179
TseFI GTSAC 2 cut(s) 645, 1048
TseI GCWGC 5 cut(s) 554, 1295, 1547, 1898, 1946
Tsp45I GTSAC 2 cut(s) 645, 1048
TspRI CASTG 5 cut(s) 672, 999, 1225, 1855, 2179
VneI GTGCAC 1 cut(s) 2394
VpaK11BI GGWCC 4 cut(s) 1130, 1733, 2348, 2588
XagI CCTNNNNNAGG 2 cut(s) 2583, 2711
XapI RAATTY 4 cut(s) 279, 1165, 1255, 1283
XbaI TCTAGA 1 cut(s) 1070
XceI RCATGY 1 cut(s) 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
XmiI GTMKAC 3 cut(s) 208, 382, 1828
XmnI GAANNNNTTC 3 cut(s) 398, 1009, 2436
XspI CTAG 8 cut(s) 341, 441, 1071, 1800, 2264, 2388, 2534, 2756
ZraI GACGTC 1 cut(s) 2602
Zsp2I ATGCAT 2 cut(s) 301, 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.