pycom06g15450

Serine threonine-protein kinase ATM-like isoform X1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
19972346 .. 19972836
491 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g15450.2

Sequence Viewer

Length: 441 bp
ATGACAATGGAGAGGCCAAAGACCCCAGAAACCCTAGAAGCTCAAAACCCTAGTGGTAAAACCCTAGAAGGGGCATCTGGGTTGTTAGGGTGGAGTGAGAACTGTACTGGGTTGGAGTCTTTTCCCGGAATTTTGGGAGGTAATGGAGAAGGAGTTGGTGTTACTGGTAATGACGTTGGACTTGGCTATGTGGAAGGGGTGACTCAAGCAGTGGAAGCCGAGAAGGGAGTTCTGGATGGTAACAACGGAGAGGATTTGGGATTGTTGGGTGTGGATGCAATTTCTGGTGTGTTTAATAGTTGCAAGAATGGTGTGGGGGTTGAGGAGGTTTGTTGGCTTAATGGTAAGGTTGGTGGGGGAAATGAGGCTCAGATGGGCTCTCAAAGGTTGCCATCAGATATGGGAGCTGACGTTCAGATGGATTTTGTGGAGCTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

147

Amino Acids

14.91

Weight (kDa)

4.05

Isoelectric Point (pI)

19.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 129
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 69, 70
AloI GAACNNNNNNTCC 2 cut(s) 396, 428
AluBI AGCT 3 cut(s) 41, 407, 433
AluI AGCT 3 cut(s) 41, 407, 433
AoxI GGCC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 129
AsuC2I CCSGG 1 cut(s) 126
AsuHPI GGTGA 1 cut(s) 211
BanII GRGCYC 1 cut(s) 380
BccI CCATC 4 cut(s) 230, 367, 400, 412
BcnI CCSGG 1 cut(s) 126
BfaI CTAG 3 cut(s) 35, 51, 65
BfmI CTRYAG 1 cut(s) 434
Bme1390I CCNGG 1 cut(s) 126
BmrFI CCNGG 1 cut(s) 126
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 83, 265
BmuI ACTGGG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 189
BpuMI CCSGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 7 cut(s) 138, 144, 168, 174, 396, 422, 426
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 70
Bse1I ACTGG 2 cut(s) 112, 169
BseGI GGATG 2 cut(s) 241, 280
BseLI CCNNNNNNNGG 2 cut(s) 69, 70
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 2 cut(s) 112, 169
BseRI GAGGAG 1 cut(s) 338
BshFI GGCC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 69, 70
BsnI GGCC 1 cut(s) 16
Bsp1286I GDGCHC 1 cut(s) 380
BspANI GGCC 1 cut(s) 16
BspCNI CTCAG 1 cut(s) 382
BsrI ACTGG 2 cut(s) 112, 169
Bst4CI ACNGT 2 cut(s) 104, 438
BstDEI CTNAG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 241, 280
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 124
BstSFI CTRYAG 1 cut(s) 434
BsuRI GGCC 1 cut(s) 16
BtsCI GGATG 2 cut(s) 241, 280
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Csp6I GTAC 1 cut(s) 105
CviJI RGCY 9 cut(s) 16, 41, 186, 218, 337, 368, 378, 407, 433
CviKI_1 RGCY 9 cut(s) 16, 41, 186, 218, 337, 368, 378, 407, 433
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 380
FaiI YATR 2 cut(s) 189, 401
FokI GGATG 2 cut(s) 248, 287
FriOI GRGCYC 1 cut(s) 380
FspBI CTAG 3 cut(s) 35, 51, 65
HaeIII GGCC 1 cut(s) 16
HapII CCGG 1 cut(s) 126
HinfI GANTC 2 cut(s) 116, 202
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 3 cut(s) 372, 397, 417
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 4 cut(s) 62, 143, 188, 217
HpyCH4III ACNGT 2 cut(s) 104, 438
HpyCH4IV ACGT 2 cut(s) 174, 411
HpyCH4V TGCA 2 cut(s) 278, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 2 cut(s) 174, 411
LmnI GCTCC 2 cut(s) 404, 430
LpnPI CCDG 7 cut(s) 39, 63, 93, 139, 150, 218, 270
LweI GCATC 2 cut(s) 83, 265
MaeI CTAG 3 cut(s) 35, 51, 65
MaeII ACGT 2 cut(s) 174, 411
MaeIII GTNAC 3 cut(s) 160, 199, 239
MhlI GDGCHC 1 cut(s) 380
MluCI AATT 2 cut(s) 129, 279
MlyI GAGTC 2 cut(s) 125, 196
MmeI TCCRAC 2 cut(s) 93, 157
MnlI CCTC 6 cut(s) 6, 131, 244, 316, 319, 358
MseI TTAA 2 cut(s) 294, 339
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 215
NciI CCSGG 1 cut(s) 126
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 199
PfoI TCCNGGA 1 cut(s) 124
PleI GAGTC 2 cut(s) 124, 196
PpsI GAGTC 2 cut(s) 124, 196
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 294, 339
SchI GAGTC 2 cut(s) 125, 196
ScrFI CCNGG 1 cut(s) 126
SduI GDGCHC 1 cut(s) 380
SetI ASST 9 cut(s) 43, 142, 177, 330, 351, 389, 409, 414, 435
SfaNI GCATC 2 cut(s) 83, 265
SfcI CTRYAG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
Sse9I AATT 2 cut(s) 129, 279
SspMI CTAG 3 cut(s) 35, 51, 65
StyD4I CCNGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 104, 438
TaiI ACGT 2 cut(s) 177, 414
TasI AATT 2 cut(s) 129, 279
TatI WGTACW 1 cut(s) 104
Tru1I TTAA 2 cut(s) 294, 339
Tru9I TTAA 2 cut(s) 294, 339
TscAI CASTG 1 cut(s) 216
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 1 cut(s) 216
XapI RAATTY 1 cut(s) 129
XspI CTAG 3 cut(s) 35, 51, 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.