Rmu_sc0007408.1_g000001

Serine threonine-protein kinase ATM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007408.1
OG0001132
Physical Location & Seq
Reverse (-)
2 .. 631
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007408.1_g000001.1.cds

Sequence Viewer

Length: 630 bp
atggttgaagaatttagagttgagaagatggttgaggatgttagagttgagaagatgatggttgaagatgttggagttaaggagaaggtggatgaggccaaagcattcgaatcgagtatgatgggtgaagatgatcaagattatgatttttgtgtgggtgatattgtgtgggttaaaaccaaaataaacacatggtggcctgctagaattcatgatcctgcagatgcatcaaagtacggaggaattggaagtgaccaggaaggctgtctactagttggctactttgggatgggtcatgtttcctggtgccgtcgataccaactgcagcctttccccaagtatttcgagcagatttctgggcagagcaaggctagaattttcattaaagctgtagagaaagctcttgaagagtttggtcgccgtgtcgaattgaatatgacttgtgcctgcgttttgaaagaaaaccgactttcagttgatgatgctgcatctaaggaaggaattttggctcctgaccgcagctccagtgaactcggtgaattttcagttgcgcattttgattctgcaaagttccttgcacatctgaaaaatcttgcacaggttgtttccaaagttggcgtacttgattat
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

210

Amino Acids

23.74

Weight (kDa)

5.06

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 552
AccB1I GGYRCC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 268
AciI CCGC 1 cut(s) 517
AclWI GGATC 1 cut(s) 209
AcsI RAATTY 5 cut(s) 11, 207, 375, 501, 539
AdeI CACNNNGTG 1 cut(s) 195
AfaI GTAC 2 cut(s) 236, 621
AgsI TTSAA 5 cut(s) 8, 65, 407, 433, 457
AhlI ACTAGT 1 cut(s) 271
AjnI CCWGG 2 cut(s) 255, 302
AluBI AGCT 3 cut(s) 389, 401, 522
AluI AGCT 3 cut(s) 389, 401, 522
AlwI GGATC 1 cut(s) 209
AoxI GGCC 2 cut(s) 96, 197
ApeKI GCWGC 3 cut(s) 325, 485, 519
ApoI RAATTY 5 cut(s) 11, 207, 375, 501, 539
AspLEI GCGC 1 cut(s) 553
AsuHPI GGTGA 3 cut(s) 137, 170, 548
AsuII TTCGAA 1 cut(s) 108
BanI GGYRCC 1 cut(s) 306
BarI GAAGNNNNNNTAC 2 cut(s) 252, 284
BbvI GCAGC 3 cut(s) 337, 472, 531
BccI CCATC 4 cut(s) 22, 52, 115, 283
BceAI ACGGC 2 cut(s) 294, 405
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BciT130I CCWGG 2 cut(s) 257, 304
BclI TGATCA 1 cut(s) 133
BcuI ACTAGT 1 cut(s) 271
BfaI CTAG 3 cut(s) 204, 272, 372
BfmI CTRYAG 3 cut(s) 219, 323, 390
BisI GCNGC 3 cut(s) 326, 486, 520
BlsI GCNGC 3 cut(s) 327, 487, 521
Bme1390I CCNGG 2 cut(s) 257, 304
BmiI GGNNCC 2 cut(s) 308, 510
BmrFI CCNGG 2 cut(s) 257, 304
BmsI GCATC 4 cut(s) 214, 236, 472, 497
BpmI CTGGAG 1 cut(s) 508
Bpu14I TTCGAA 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bse1I ACTGG 1 cut(s) 525
BseBI CCWGG 2 cut(s) 257, 304
BseGI GGATG 3 cut(s) 43, 97, 294
BseNI ACTGG 1 cut(s) 525
BseXI GCAGC 3 cut(s) 337, 472, 531
BshFI GGCC 2 cut(s) 98, 199
BshNI GGYRCC 1 cut(s) 306
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 2 cut(s) 98, 199
Bsp119I TTCGAA 1 cut(s) 108
Bsp143I GATC 2 cut(s) 133, 214
BspACI CCGC 1 cut(s) 517
BspANI GGCC 2 cut(s) 98, 199
BspHI TCATGA 1 cut(s) 211
BspLI GGNNCC 2 cut(s) 308, 510
BspMAI CTGCAG 2 cut(s) 223, 327
BspPI GGATC 1 cut(s) 209
BspT104I TTCGAA 1 cut(s) 108
BspT107I GGYRCC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 525
BssMI GATC 2 cut(s) 133, 214
Bst2UI CCWGG 2 cut(s) 257, 304
Bst6I CTCTTC 1 cut(s) 402
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 201, 448
BstDEI CTNAG 1 cut(s) 492
BstF5I GGATG 3 cut(s) 43, 97, 294
BstHHI GCGC 1 cut(s) 553
BstKTI GATC 2 cut(s) 136, 217
BstMBI GATC 2 cut(s) 133, 214
BstNI CCWGG 2 cut(s) 257, 304
BstSCI CCNGG 2 cut(s) 255, 302
BstSFI CTRYAG 3 cut(s) 219, 323, 390
BstV1I GCAGC 3 cut(s) 337, 472, 531
BsuRI GGCC 2 cut(s) 98, 199
BtsCI GGATG 3 cut(s) 43, 97, 294
BtsIMutI CAGTG 1 cut(s) 532
Cac8I GCNNGC 2 cut(s) 201, 448
CciI TCATGA 1 cut(s) 211
CfoI GCGC 1 cut(s) 553
Csp6I GTAC 2 cut(s) 235, 620
CviAII CATG 3 cut(s) 192, 212, 296
CviQI GTAC 2 cut(s) 235, 620
DdeI CTNAG 1 cut(s) 492
DpnI GATC 2 cut(s) 135, 216
DpnII GATC 2 cut(s) 133, 214
DraIII CACNNNGTG 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 402
EarI CTCTTC 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 207
EcoRII CCWGG 2 cut(s) 255, 302
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 3 cut(s) 195, 215, 299
FaiI YATR 6 cut(s) 119, 144, 193, 213, 297, 437
FatI CATG 3 cut(s) 191, 211, 295
FbaI TGATCA 1 cut(s) 133
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 3 cut(s) 326, 486, 520
FokI GGATG 3 cut(s) 50, 104, 301
Fsp4HI GCNGC 3 cut(s) 326, 486, 520
FspBI CTAG 3 cut(s) 204, 272, 372
FspI TGCGCA 1 cut(s) 552
GlaI GCGC 1 cut(s) 552
GluI GCNGC 3 cut(s) 326, 486, 520
GsuI CTGGAG 1 cut(s) 508
HaeIII GGCC 2 cut(s) 98, 199
HhaI GCGC 1 cut(s) 553
Hin1II CATG 3 cut(s) 195, 215, 299
Hin6I GCGC 1 cut(s) 551
HinP1I GCGC 1 cut(s) 551
HinfI GANTC 2 cut(s) 110, 560
HphI GGTGA 3 cut(s) 137, 170, 548
Hpy166II GTNNAC 2 cut(s) 269, 530
Hpy188I TCNGA 1 cut(s) 585
Hpy188III TCNNGA 4 cut(s) 137, 212, 404, 512
Hpy8I GTNNAC 2 cut(s) 269, 530
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 3 cut(s) 79, 254, 491
HpyCH4V TGCA 7 cut(s) 221, 227, 325, 488, 566, 578, 596
HpyF3I CTNAG 1 cut(s) 492
Hsp92II CATG 3 cut(s) 195, 215, 299
HspAI GCGC 1 cut(s) 551
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 2 cut(s) 133, 214
LmnI GCTCC 2 cut(s) 514, 527
Lsp1109I GCAGC 3 cut(s) 337, 472, 531
LweI GCATC 4 cut(s) 214, 236, 472, 497
MaeI CTAG 3 cut(s) 204, 272, 372
MaeIII GTNAC 1 cut(s) 251
MalI GATC 2 cut(s) 135, 216
MboI GATC 2 cut(s) 133, 214
MboII GAAGA 6 cut(s) 20, 37, 64, 77, 140, 419
MluCI AATT 7 cut(s) 11, 207, 243, 375, 428, 501, 539
MmeI TCCRAC 1 cut(s) 52
MnlI CCTC 3 cut(s) 28, 88, 233
Mph1103I ATGCAT 1 cut(s) 229
MseI TTAA 3 cut(s) 78, 174, 384
MspR9I CCNGG 2 cut(s) 257, 304
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 2 cut(s) 257, 304
NdeII GATC 2 cut(s) 133, 214
NlaIII CATG 3 cut(s) 195, 215, 299
NlaIV GGNNCC 2 cut(s) 308, 510
NmuCI GTSAC 1 cut(s) 251
NsbI TGCGCA 1 cut(s) 552
NsiI ATGCAT 1 cut(s) 229
NspV TTCGAA 1 cut(s) 108
PagI TCATGA 1 cut(s) 211
PctI GAATGC 1 cut(s) 104
PfeI GAWTC 2 cut(s) 110, 560
PkrI GCNGC 3 cut(s) 327, 487, 521
Psp6I CCWGG 2 cut(s) 255, 302
PspGI CCWGG 2 cut(s) 255, 302
PspN4I GGNNCC 2 cut(s) 308, 510
PstI CTGCAG 2 cut(s) 223, 327
RsaI GTAC 2 cut(s) 236, 621
RsaNI GTAC 2 cut(s) 235, 620
SaqAI TTAA 3 cut(s) 78, 174, 384
SatI GCNGC 3 cut(s) 326, 486, 520
Sau3AI GATC 2 cut(s) 133, 214
ScrFI CCNGG 2 cut(s) 257, 304
SetI ASST 5 cut(s) 90, 391, 403, 524, 603
SfaNI GCATC 4 cut(s) 214, 236, 472, 497
SfcI CTRYAG 3 cut(s) 219, 323, 390
SfuI TTCGAA 1 cut(s) 108
SpeI ACTAGT 1 cut(s) 271
Sse9I AATT 7 cut(s) 11, 207, 243, 375, 428, 501, 539
SsiI CCGC 1 cut(s) 517
SspMI CTAG 3 cut(s) 204, 272, 372
StyD4I CCNGG 2 cut(s) 255, 302
TaqI TCGA 5 cut(s) 108, 113, 313, 345, 426
TasI AATT 7 cut(s) 11, 207, 243, 375, 428, 501, 539
TfiI GAWTC 2 cut(s) 110, 560
Tru1I TTAA 3 cut(s) 78, 174, 384
Tru9I TTAA 3 cut(s) 78, 174, 384
TscAI CASTG 1 cut(s) 532
TseFI GTSAC 1 cut(s) 251
TseI GCWGC 3 cut(s) 325, 485, 519
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 200, 370
TspGWI ACGGA 1 cut(s) 252
TspRI CASTG 1 cut(s) 532
XapI RAATTY 5 cut(s) 11, 207, 375, 501, 539
XmiI GTMKAC 1 cut(s) 268
XspI CTAG 3 cut(s) 204, 272, 372
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.