RLG00000001963

Serine threonine-protein kinase ATM-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Reverse (-)
23605129 .. 23610066
4938 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001963

Sequence Viewer

Length: 2979 bp
ATGTTGCTTTGCTTACTAATTTTGGTCCTGATGGTTGAAGAATTTAGAGTTGAGAAGATGGTTGAAGATGTTGGAGTTAAGGAGAAGGTGGATGAGGCCAAAGCATTCGAATCGAGTATGATCGGTGAAGATGATCGAGATTATGATTTTTGTGTGGGTGATATTGTGTGGGTTAAAACCAAAATAAACACATGGTGGCCTGCTAGAATTCATGATCCTGCAGATGTGTCAAAGTACGGAGGAATTGAAAGTGACCAAGAAGACTGTCTACTAGTTGGGTACTTTGGGATGGGTCATGTTGCTTGGTGCCGTCGATACCAACTGAAGCCTTTCCCCAAGTATTTCGAGCAGATTTCAGGGCAGAGCAAGGCTAGAATTTTCGTCAAAGCTGTAGAGAAAGCTCTTGAAGAGTTTGGTCGTCGTGTCAAATTGAATATGACTTGTGCCTGTGTTTTGAAAGAAAACCGACTTTCAGTTGATGATGCTGCATCTAAGGAAGGAGTTTTGGTTCCTGACCGCAGCTCCAGTGAACTCGGTGAATTTTCAGTTACGCATTTTGATTCTGCAGAGTTCCTTGCACATCTGAAAAATCTTGCACAGGTTGTTTCCAAAGTTGCCGTACTTGATTATACTGTTACACGTAGTCGATTATCAGCCTTCTGTACCTCCACAGGGCACAGGCAGCTGCCTATGCATCTACTTCAGGAAGGAAATGATGCTGAAAGTGGTGCTGACGGAACCTTGCTGAAGCAAACAGAGGAAAATGTCCTGCATCAAGAAAAGAATGATGAGAATGAAGCTTTTGCAAAGGTTTTTGGTGGGGGCAGTGCTGACAAAACTTCCATCTCAAGTTCAAAGTCCAGGAAGAGAAAGATGAAGAGGGATTCTGAAATTGAAGAGACTAGTCTCATGATATCCCCAACAGTGAAAGAGAGCAAGGCTTCTAGTGTAGTAGATGGTGATGGCGGAAATGAAGCAATGATTGAAATAGGCGCCGAGTCTAGAGAGAGAAAGAAGAGTAGGTACTTGTCTTACCCATACATAAATGTGGGGCAGAAAGGATTGTCTGCAGAAGGAATGGCGGCAACAATTGATGGTGGACCCCCTTCAAATTTTAAAAGCACCGGTGAGAAGTTCTGGAGGAAATGGTATAGGAGGTTTACTGGTGTGAGTAACATATCTGGTGATTCATATTTGAAAAATGCATCTTCTGCTGAGTTGCTTTCTGAATTCTGCTCTGCAGCCGTCGACTGCCAGTATCCGATTGAAAATAAAGCATTTCATTCAGTTGCTTGGCTCATCTCTAACTTTAGGATATCAGTATTTCATGACGAGCCTTTTTGTGAAACCTACAGTAAGAACATGGCTGGTCAGGATGAGGATAGAGATGCTGAGACTTGCCTGTTGGAAAATGGTGGCCAGAATGAGGCTAAATCCGAGCCAAAGAAAAGAAATAAAAAGGCAGTTTCGAAGCATCTAGAGGGTGAAGATGCTGCCAACACGTCAAGCTTAGTTCAAAGCCCTGCAACTGCTGTAGAGGTAGAGGGTATGAATGGAAACCTTGGCAAGAAAAGGGGACGACCAAAGTTAGGGAGATCCAAGACTAAATCCCTTTCTGGGATGTCAGATGTCAATATAAGCATTGCCCCTGATGGCCAAATGGTACAAGATTCTTCAGCTGTCGGCCCTCTCATGCCCTGTGATAAGCCTAAGCAAAAGAAAAGAGAGAAGGTGGAAGGAGCAAGTCAAGTAAGTTTGCAGACTAAACAAACAATTGGTATACCTGATTTGAATGGTAATAGTGTTCTACCTACCATTCTGGTTAATAAACAACAGACTATTGGCCATGCTGTTTCTGATGGTAACATCCAGCTAGAAAAGAGATTGGGGACGGAAACTGCTTCAGAGCACTCAATATCCAATATGGCTCCTGGCTTAGTAGATACCAATGGAAACAATTTGAAACCTGGTACATTGGTTGTAGATCTGGGGATTCGTGCTCAGGCTTTGGCATGCCTGGACTCTAAACAGGTGACCAGCCGGCTCACAGCTGAGAGTAAACCTGCCCCGAAAAAGAGAAAGAGAAAGGATAAAGTAGATCCGGGGGTTCCTGTTCAAGCTGACAGTATTCCAGATTTGAATGGAAATGGTGCTGAATGCCTTACACCTTCAAGAAAACCTGAGCGGAAGAAGAGGAGGAGAAAAGGAGAAGGTCTAGCAACCGCTCTCCTCTTGACATTTGCGTCCGGAATTCCACTGCCTTCAAAAGATGATTTAATCTCAACATTTTGTAGGTTTGGACCCTTGAAAGAATCGGAGACGCAGTTATTAAAAGATTCTAGTAGTGCACAGGTTGTATTCATGGAAAGTGCTGATGCTGGAGAGGCATTTCAGAGTTTAGAGAAGAACAACCCTTTTGGCACAAACCTTGTTGCTTACAAGCGCTTTAATCTTCCATCAGTGTCCAAGGTTTTAGCCACAAGCCTATCCTCTCCGCCTACTAAGAGATTGGTGACTCCTGTACAATCGCCTGGCAAGGGACCTTGCCTTGACGCCATAAGGCAGAATCTTCAGGTGATGACATCAATGCTGGAGACTTCAGGTGATACTCTTTCTCCAGAGATGAGAGCCAAACTGGAGTGTGAAATAAAAGGCCTCCTACAGAAGGACCTTTTAGGGCAGGTTCTTTTGGTGATGTTGATATTAAAAGACCTCTGGGATAGTTTGACGAGAGGCCATGAGCAGCGACTCATTTGCATTGGAGGACCTATGTTGATGGAAGAGCCAACAACTTACAACTGGCTTTGTAGGTTGATGGAAGAGCCTGCTGCATATGGAAAGTTAGGGTTGGCCAATCTATTGGAACTGAGGGAAGAATGCTTGAGGGAGTTCCAACTTGTTGATGCATATAGAAGTATAAAACAAAGGGAAAACAAGGCATCACTTGCTGTTTTACCCGATCCTGCTCCTGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

993

Amino Acids

109.02

Weight (kDa)

6.92

Isoelectric Point (pI)

46.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 53 - 138 1.8e-13 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2242
Acc36I ACCTGC 2 cut(s) 2071, 2671
AccB1I GGYRCC 2 cut(s) 306, 992
AccBSI CCGCTC 2 cut(s) 2185, 2225
AccI GTMKAC 3 cut(s) 268, 1248, 1780
AccIII TCCGGA 1 cut(s) 2246
AciI CCGC 6 cut(s) 517, 966, 1082, 2185, 2223, 2495
AclWI GGATC 4 cut(s) 209, 1590, 2093, 2954
AcoI YGGCCR 4 cut(s) 1417, 1654, 1843, 2850
AcsI RAATTY 7 cut(s) 41, 207, 375, 539, 1111, 1229, 2250
AcuI CTGAAG 7 cut(s) 344, 686, 767, 1659, 1887, 2555, 2583
AcyI GRCGYC 2 cut(s) 993, 2553
AdeI CACNNNGTG 1 cut(s) 195
AfaI GTAC 8 cut(s) 236, 281, 621, 664, 1025, 1665, 1972, 2523
AfeI AGCGCT 1 cut(s) 2444
AfiI CCNNNNNNNGG 6 cut(s) 672, 1426, 1589, 1617, 2537, 2665
AflIII ACRYGT 2 cut(s) 638, 1500
AgeI ACCGGT 1 cut(s) 1124
AhlI ACTAGT 2 cut(s) 271, 902
AjiI CACGTC 1 cut(s) 1503
AjnI CCWGG 5 cut(s) 860, 1930, 1966, 2016, 2530
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
Alw21I GWGCWC 3 cut(s) 1911, 2002, 2350
Alw26I GTCTC 5 cut(s) 893, 911, 1388, 2312, 2588
Alw44I GTGCAC 1 cut(s) 2346
AlwI GGATC 4 cut(s) 209, 1590, 2093, 2954
Aor13HI TCCGGA 1 cut(s) 2246
Aor51HI AGCGCT 1 cut(s) 2444
AoxI GGCC 9 cut(s) 96, 197, 1417, 1654, 1684, 1843, 2653, 2734, 2850
ApaLI GTGCAC 1 cut(s) 2346
ApeKI GCWGC 8 cut(s) 485, 519, 682, 685, 1241, 1493, 2743, 2828
ApoI RAATTY 7 cut(s) 41, 207, 375, 539, 1111, 1229, 2250
AsiGI ACCGGT 1 cut(s) 1124
Asp700I GAANNNNTTC 1 cut(s) 329
AspLEI GCGC 2 cut(s) 995, 2445
AspS9I GGNCC 7 cut(s) 25, 1100, 1685, 2300, 2540, 2668, 2765
AsuC2I CCSGG 1 cut(s) 2103
AsuII TTCGAA 2 cut(s) 108, 1469
AvaII GGWCC 6 cut(s) 25, 1100, 2300, 2540, 2668, 2765
BaeGI GKGCMC 2 cut(s) 678, 2350
BaeI ACNNNNGTAYC 2 cut(s) 1962, 1995
BalI TGGCCA 4 cut(s) 1419, 1656, 1845, 2852
BanI GGYRCC 2 cut(s) 306, 992
BarI GAAGNNNNNNTAC 4 cut(s) 252, 284, 1007, 1039
BbsI GAAGAC 1 cut(s) 267
Bbv12I GWGCWC 3 cut(s) 1911, 2002, 2350
BbvI GCAGC 8 cut(s) 472, 531, 672, 694, 1253, 1480, 2755, 2815
BceAI ACGGC 3 cut(s) 294, 602, 1229
BcgI CGANNNNNNTGC 4 cut(s) 93, 127, 2736, 2770
BciT130I CCWGG 5 cut(s) 862, 1932, 1968, 2018, 2532
BciVI GTATCC 1 cut(s) 1269
BcnI CCSGG 1 cut(s) 2103
BcoDI GTCTC 5 cut(s) 893, 911, 1388, 2312, 2588
BcuI ACTAGT 2 cut(s) 271, 902
BfmI CTRYAG 8 cut(s) 219, 390, 564, 1068, 1239, 1351, 1533, 2660
BfoI RGCGCY 2 cut(s) 996, 2446
BfuAI ACCTGC 2 cut(s) 2071, 2671
BfuI GTATCC 1 cut(s) 1269
BglII AGATCT 1 cut(s) 1984
BisI GCNGC 9 cut(s) 486, 520, 683, 686, 1083, 1242, 1494, 2744, 2829
BlsI GCNGC 9 cut(s) 487, 521, 684, 687, 1084, 1243, 1495, 2745, 2830
Bme1390I CCNGG 6 cut(s) 862, 1932, 1968, 2018, 2103, 2532
Bme18I GGWCC 6 cut(s) 25, 1100, 2300, 2540, 2668, 2765
BmgBI CACGTC 1 cut(s) 1503
BmgT120I GGNCC 7 cut(s) 25, 1100, 1685, 2300, 2540, 2668, 2765
BmiI GGNNCC 9 cut(s) 308, 510, 739, 994, 1102, 1929, 2109, 2302, 2541
BmrFI CCNGG 6 cut(s) 862, 1932, 1968, 2018, 2103, 2532
BpiI GAAGAC 1 cut(s) 267
BpmI CTGGAG 6 cut(s) 508, 1159, 2400, 2601, 2612, 2657
Bpu10I CCTNAGC 3 cut(s) 1710, 2001, 2181
Bpu14I TTCGAA 2 cut(s) 108, 1469
BpuEI CTTGAG 2 cut(s) 832, 2902
BpuMI CCSGG 1 cut(s) 2103
BsaAI YACGTR 1 cut(s) 641
BsaHI GRCGYC 2 cut(s) 993, 2553
BsaJI CCNNGG 3 cut(s) 1561, 2102, 2466
BsaWI WCCGGW 2 cut(s) 1124, 2246
BsaXI ACNNNNNCTCC 8 cut(s) 492, 506, 522, 536, 2309, 2339, 2599, 2629
Bsc4I CCNNNNNNNGG 6 cut(s) 672, 1426, 1589, 1617, 2537, 2665
Bse118I RCCGGY 2 cut(s) 1124, 2040
Bse1I ACTGG 5 cut(s) 525, 1168, 1255, 2640, 2804
Bse3DI GCAATG 2 cut(s) 984, 1641
BseAI TCCGGA 1 cut(s) 2246
BseBI CCWGG 5 cut(s) 862, 1932, 1968, 2018, 2532
BseDI CCNNGG 3 cut(s) 1561, 2102, 2466
BseGI GGATG 5 cut(s) 97, 294, 1381, 1626, 1866
BseLI CCNNNNNNNGG 6 cut(s) 672, 1426, 1589, 1617, 2537, 2665
BseMI GCAATG 2 cut(s) 984, 1641
BseMII CTCAG 6 cut(s) 1206, 1383, 2015, 2043, 2172, 2858
BseNI ACTGG 5 cut(s) 525, 1168, 1255, 2640, 2804
BseRI GAGGAG 3 cut(s) 2209, 2212, 2219
BseSI GKGCMC 2 cut(s) 678, 2350
BseXI GCAGC 8 cut(s) 472, 531, 672, 694, 1253, 1480, 2755, 2815
BshFI GGCC 9 cut(s) 98, 199, 1419, 1656, 1686, 1845, 2655, 2736, 2852
BshNI GGYRCC 2 cut(s) 306, 992
BshTI ACCGGT 1 cut(s) 1124
BsiHKAI GWGCWC 3 cut(s) 1911, 2002, 2350
BsiSI CCGG 4 cut(s) 1125, 2041, 2102, 2247
BslFI GGGAC 3 cut(s) 1590, 1903, 2553
BslI CCNNNNNNNGG 6 cut(s) 672, 1426, 1589, 1617, 2537, 2665
BsmAI GTCTC 5 cut(s) 893, 911, 1388, 2312, 2588
BsmBI CGTCTC 1 cut(s) 2312
BsmFI GGGAC 3 cut(s) 1590, 1903, 2553
BsmI GAATGC 3 cut(s) 104, 2162, 2882
BsnI GGCC 9 cut(s) 98, 199, 1419, 1656, 1686, 1845, 2655, 2736, 2852
Bsp119I TTCGAA 2 cut(s) 108, 1469
Bsp1286I GDGCHC 4 cut(s) 678, 1911, 2002, 2350
Bsp13I TCCGGA 1 cut(s) 2246
Bsp1407I TGTACA 1 cut(s) 2521
Bsp143I GATC 7 cut(s) 120, 133, 214, 1595, 1984, 2098, 2959
BspACI CCGC 6 cut(s) 517, 966, 1082, 2185, 2223, 2495
BspANI GGCC 9 cut(s) 98, 199, 1419, 1656, 1686, 1845, 2655, 2736, 2852
BspCNI CTCAG 6 cut(s) 1207, 1384, 2014, 2044, 2173, 2859
BspEI TCCGGA 1 cut(s) 2246
BspHI TCATGA 3 cut(s) 211, 909, 1327
BspLI GGNNCC 9 cut(s) 308, 510, 739, 994, 1102, 1929, 2109, 2302, 2541
BspMAI CTGCAG 4 cut(s) 223, 568, 1072, 1243
BspMI ACCTGC 2 cut(s) 2071, 2671
BspPI GGATC 4 cut(s) 209, 1590, 2093, 2954
BspQI GCTCTTC 2 cut(s) 2775, 2814
BspT104I TTCGAA 2 cut(s) 108, 1469
BspT107I GGYRCC 2 cut(s) 306, 992
BsrBI CCGCTC 2 cut(s) 2185, 2225
BsrDI GCAATG 2 cut(s) 984, 1641
BsrFI RCCGGY 2 cut(s) 1124, 2040
BsrGI TGTACA 1 cut(s) 2521
BsrI ACTGG 5 cut(s) 525, 1168, 1255, 2640, 2804
BssAI RCCGGY 2 cut(s) 1124, 2040
BssECI CCNNGG 3 cut(s) 1561, 2102, 2466
BssMI GATC 7 cut(s) 120, 133, 214, 1595, 1984, 2098, 2959
BssNAI GTATAC 1 cut(s) 1781
BssNI GRCGYC 2 cut(s) 993, 2553
BssT1I CCWWGG 2 cut(s) 1561, 2466
Bst1107I GTATAC 1 cut(s) 1781
Bst2UI CCWGG 5 cut(s) 862, 1932, 1968, 2018, 2532
Bst4CI ACNGT 5 cut(s) 266, 634, 925, 1355, 2126
Bst6I CTCTTC 8 cut(s) 402, 860, 872, 891, 1010, 2186, 2775, 2814
BstACI GRCGYC 2 cut(s) 993, 2553
BstAPI GCANNNNNTGC 2 cut(s) 1211, 2945
BstAUI TGTACA 1 cut(s) 2521
BstBAI YACGTR 1 cut(s) 641
BstBI TTCGAA 2 cut(s) 108, 1469
BstC8I GCNNGC 4 cut(s) 201, 2014, 2042, 2826
BstEII GGTNACC 1 cut(s) 2032
BstENI CCTNNNNNAGG 1 cut(s) 2663
BstF5I GGATG 5 cut(s) 97, 294, 1381, 1626, 1866
BstH2I RGCGCY 2 cut(s) 996, 2446
BstHHI GCGC 2 cut(s) 995, 2445
BstKTI GATC 7 cut(s) 123, 136, 217, 1598, 1987, 2101, 2962
BstMAI GTCTC 5 cut(s) 893, 911, 1388, 2312, 2588
BstMBI GATC 7 cut(s) 120, 133, 214, 1595, 1984, 2098, 2959
BstMWI GCNNNNNNNGC 5 cut(s) 682, 691, 1211, 2384, 2945
BstNI CCWGG 5 cut(s) 862, 1932, 1968, 2018, 2532
BstNSI RCATGY 1 cut(s) 2016
BstPI GGTNACC 1 cut(s) 2032
BstSCI CCNGG 6 cut(s) 860, 1930, 1966, 2016, 2101, 2530
BstSFI CTRYAG 8 cut(s) 219, 390, 564, 1068, 1239, 1351, 1533, 2660
BstSLI GKGCMC 2 cut(s) 678, 2350
BstV1I GCAGC 8 cut(s) 472, 531, 672, 694, 1253, 1480, 2755, 2815
BstV2I GAAGAC 1 cut(s) 267
BstX2I RGATCY 3 cut(s) 1595, 1984, 2098
BstXI CCANNNNNNTGG 1 cut(s) 2860
BstYI RGATCY 3 cut(s) 1595, 1984, 2098
BstZ17I GTATAC 1 cut(s) 1781
BsuI GTATCC 1 cut(s) 1269
BsuRI GGCC 9 cut(s) 98, 199, 1419, 1656, 1686, 1845, 2655, 2736, 2852
BtrI CACGTC 1 cut(s) 1503
BtsCI GGATG 5 cut(s) 97, 294, 1381, 1626, 1866
BtsI GCAGTG 2 cut(s) 832, 2255
BtsIMutI CAGTG 5 cut(s) 532, 832, 930, 2255, 2466
BveI ACCTGC 2 cut(s) 2071, 2671
Cac8I GCNNGC 4 cut(s) 201, 2014, 2042, 2826
CciI TCATGA 3 cut(s) 211, 909, 1327
CfoI GCGC 2 cut(s) 995, 2445
Cfr10I RCCGGY 2 cut(s) 1124, 2040
Cfr13I GGNCC 7 cut(s) 25, 1100, 1685, 2300, 2540, 2668, 2765
CseI GACGC 3 cut(s) 2232, 2329, 2561
CsiI ACCWGGT 1 cut(s) 1966
Csp6I GTAC 8 cut(s) 235, 280, 620, 663, 1024, 1664, 1971, 2522
CspAI ACCGGT 1 cut(s) 1124
CviQI GTAC 8 cut(s) 235, 280, 620, 663, 1024, 1664, 1971, 2522
DinI GGCGCC 1 cut(s) 994
DpnI GATC 7 cut(s) 122, 135, 216, 1597, 1986, 2100, 2961
DpnII GATC 7 cut(s) 120, 133, 214, 1595, 1984, 2098, 2959
DraI TTTAAA 1 cut(s) 1117
DraIII CACNNNGTG 1 cut(s) 195
DrdI GACNNNNNNGTC 1 cut(s) 2242
DseDI GACNNNNNNGTC 1 cut(s) 2242
EaeI YGGCCR 4 cut(s) 1417, 1654, 1843, 2850
Eam1104I CTCTTC 8 cut(s) 402, 860, 872, 891, 1010, 2186, 2775, 2814
EarI CTCTTC 8 cut(s) 402, 860, 872, 891, 1010, 2186, 2775, 2814
EciI GGCGGA 2 cut(s) 981, 2484
Eco130I CCWWGG 2 cut(s) 1561, 2466
Eco147I AGGCCT 1 cut(s) 2655
Eco32I GATATC 2 cut(s) 915, 1317
Eco47I GGWCC 6 cut(s) 25, 1100, 2300, 2540, 2668, 2765
Eco47III AGCGCT 1 cut(s) 2444
Eco57I CTGAAG 7 cut(s) 344, 686, 767, 1659, 1887, 2555, 2583
Eco91I GGTNACC 1 cut(s) 2032
EcoNI CCTNNNNNAGG 1 cut(s) 2663
EcoO109I RGGNCCY 3 cut(s) 2540, 2668, 2765
EcoO65I GGTNACC 1 cut(s) 2032
EcoRI GAATTC 3 cut(s) 207, 1229, 2250
EcoRII CCWGG 5 cut(s) 860, 1930, 1966, 2016, 2530
EcoRV GATATC 2 cut(s) 915, 1317
EcoT14I CCWWGG 2 cut(s) 1561, 2466
EcoT22I ATGCAT 3 cut(s) 696, 1207, 2908
EgeI GGCGCC 1 cut(s) 994
EheI GGCGCC 1 cut(s) 994
ErhI CCWWGG 2 cut(s) 1561, 2466
Esp3I CGTCTC 1 cut(s) 2312
FaqI GGGAC 3 cut(s) 1590, 1903, 2553
FauNDI CATATG 1 cut(s) 2833
FblI GTMKAC 3 cut(s) 268, 1248, 1780
Fnu4HI GCNGC 9 cut(s) 486, 520, 683, 686, 1083, 1242, 1494, 2744, 2829
FokI GGATG 5 cut(s) 104, 301, 1388, 1633, 1853
Fsp4HI GCNGC 9 cut(s) 486, 520, 683, 686, 1083, 1242, 1494, 2744, 2829
GlaI GCGC 2 cut(s) 994, 2444
GluI GCNGC 9 cut(s) 486, 520, 683, 686, 1083, 1242, 1494, 2744, 2829
GsuI CTGGAG 6 cut(s) 508, 1159, 2400, 2601, 2612, 2657
HaeII RGCGCY 2 cut(s) 996, 2446
HaeIII GGCC 9 cut(s) 98, 199, 1419, 1656, 1686, 1845, 2655, 2736, 2852
HapII CCGG 4 cut(s) 1125, 2041, 2102, 2247
HgaI GACGC 3 cut(s) 2232, 2329, 2561
HhaI GCGC 2 cut(s) 995, 2445
Hin1I GRCGYC 2 cut(s) 993, 2553
Hin6I GCGC 2 cut(s) 993, 2443
HinP1I GCGC 2 cut(s) 993, 2443
HincII GTYRAC 1 cut(s) 1249
HindII GTYRAC 1 cut(s) 1249
HindIII AAGCTT 2 cut(s) 798, 1507
HpaII CCGG 4 cut(s) 1125, 2041, 2102, 2247
Hpy166II GTNNAC 8 cut(s) 269, 530, 1100, 1161, 1249, 1781, 2060, 2348
Hpy8I GTNNAC 8 cut(s) 269, 530, 1100, 1161, 1249, 1781, 2060, 2348
Hpy99I CGWCG 3 cut(s) 315, 423, 1250
HpyCH4III ACNGT 5 cut(s) 266, 634, 925, 1355, 2126
HpyCH4IV ACGT 2 cut(s) 640, 1502
HpyF10VI GCNNNNNNNGC 5 cut(s) 682, 691, 1211, 2384, 2945
HpySE526I ACGT 2 cut(s) 640, 1502
Hsp92I GRCGYC 2 cut(s) 993, 2553
HspAI GCGC 2 cut(s) 993, 2443
KasI GGCGCC 1 cut(s) 992
Kpn2I TCCGGA 1 cut(s) 2246
KroI GCCGGC 1 cut(s) 2040
KroNI GCCGGC 1 cut(s) 2042
Kzo9I GATC 7 cut(s) 120, 133, 214, 1595, 1984, 2098, 2959
LguI GCTCTTC 2 cut(s) 2775, 2814
LmnI GCTCC 4 cut(s) 527, 1739, 1933, 2971
Lsp1109I GCAGC 8 cut(s) 472, 531, 672, 694, 1253, 1480, 2755, 2815
MabI ACCWGGT 1 cut(s) 1966
MaeII ACGT 2 cut(s) 640, 1502
MaeIII GTNAC 7 cut(s) 251, 547, 634, 1172, 1862, 2032, 2512
MalI GATC 7 cut(s) 122, 135, 216, 1597, 1986, 2100, 2961
MbiI CCGCTC 2 cut(s) 2185, 2225
MboI GATC 7 cut(s) 120, 133, 214, 1595, 1984, 2098, 2959
MfeI CAATTG 2 cut(s) 1089, 1773
MflI RGATCY 3 cut(s) 1595, 1984, 2098
MhlI GDGCHC 4 cut(s) 678, 1911, 2002, 2350
MlsI TGGCCA 4 cut(s) 1419, 1656, 1845, 2852
MluNI TGGCCA 4 cut(s) 1419, 1656, 1845, 2852
Mly113I GGCGCC 1 cut(s) 993
MlyI GAGTC 4 cut(s) 1007, 2015, 2509, 2742
MmeI TCCRAC 3 cut(s) 52, 1386, 2917
Mox20I TGGCCA 4 cut(s) 1419, 1656, 1845, 2852
Mph1103I ATGCAT 3 cut(s) 696, 1207, 2908
MroI TCCGGA 1 cut(s) 2246
MroNI GCCGGC 1 cut(s) 2040
MroXI GAANNNNTTC 1 cut(s) 329
MscI TGGCCA 4 cut(s) 1419, 1656, 1845, 2852
MseI TTAA 8 cut(s) 78, 174, 1116, 1824, 2276, 2330, 2448, 2705
MslI CAYNNNNRTG 1 cut(s) 1046
Msp20I TGGCCA 4 cut(s) 1419, 1656, 1845, 2852
MspA1I CMGCKG 3 cut(s) 685, 1679, 2051
MspI CCGG 4 cut(s) 1125, 2041, 2102, 2247
MspR9I CCNGG 6 cut(s) 862, 1932, 1968, 2018, 2103, 2532
MunI CAATTG 2 cut(s) 1089, 1773
Mva1269I GAATGC 3 cut(s) 104, 2162, 2882
MvaI CCWGG 5 cut(s) 862, 1932, 1968, 2018, 2532
MwoI GCNNNNNNNGC 5 cut(s) 682, 691, 1211, 2384, 2945
NaeI GCCGGC 1 cut(s) 2042
NarI GGCGCC 1 cut(s) 993
NciI CCSGG 1 cut(s) 2103
NdeI CATATG 1 cut(s) 2833
NdeII GATC 7 cut(s) 120, 133, 214, 1595, 1984, 2098, 2959
NgoMIV GCCGGC 1 cut(s) 2040
NlaIV GGNNCC 9 cut(s) 308, 510, 739, 994, 1102, 1929, 2109, 2302, 2541
NmeAIII GCCGAG 1 cut(s) 1021
NmuCI GTSAC 3 cut(s) 251, 2032, 2512
NsiI ATGCAT 3 cut(s) 696, 1207, 2908
NspI RCATGY 1 cut(s) 2016
NspV TTCGAA 2 cut(s) 108, 1469
PaeI GCATGC 1 cut(s) 2016
PagI TCATGA 3 cut(s) 211, 909, 1327
PceI AGGCCT 1 cut(s) 2655
PciSI GCTCTTC 2 cut(s) 2775, 2814
PctI GAATGC 3 cut(s) 104, 2162, 2882
PdiI GCCGGC 1 cut(s) 2042
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 9 cut(s) 110, 560, 884, 1187, 1670, 1993, 2312, 2336, 2566
PfoI TCCNGGA 1 cut(s) 860
PinAI ACCGGT 1 cut(s) 1124
PkrI GCNGC 9 cut(s) 487, 521, 684, 687, 1084, 1243, 1495, 2745, 2830
PleI GAGTC 4 cut(s) 1006, 2015, 2509, 2742
PluTI GGCGCC 1 cut(s) 996
PpsI GAGTC 4 cut(s) 1006, 2015, 2509, 2742
Ppu21I YACGTR 1 cut(s) 641
PpuMI RGGWCCY 3 cut(s) 2540, 2668, 2765
Psp5II RGGWCCY 3 cut(s) 2540, 2668, 2765
Psp6I CCWGG 5 cut(s) 860, 1930, 1966, 2016, 2530
PspEI GGTNACC 1 cut(s) 2032
PspGI CCWGG 5 cut(s) 860, 1930, 1966, 2016, 2530
PspN4I GGNNCC 9 cut(s) 308, 510, 739, 994, 1102, 1929, 2109, 2302, 2541
PspPI GGNCC 7 cut(s) 25, 1100, 1685, 2300, 2540, 2668, 2765
PspPPI RGGWCCY 3 cut(s) 2540, 2668, 2765
PstI CTGCAG 4 cut(s) 223, 568, 1072, 1243
PsuI RGATCY 3 cut(s) 1595, 1984, 2098
PvuII CAGCTG 3 cut(s) 685, 1679, 2051
RsaI GTAC 8 cut(s) 236, 281, 621, 664, 1025, 1665, 1972, 2523
RsaNI GTAC 8 cut(s) 235, 280, 620, 663, 1024, 1664, 1971, 2522
RseI CAYNNNNRTG 1 cut(s) 1046
SalI GTCGAC 1 cut(s) 1247
SapI GCTCTTC 2 cut(s) 2775, 2814
SaqAI TTAA 8 cut(s) 78, 174, 1116, 1824, 2276, 2330, 2448, 2705
SatI GCNGC 9 cut(s) 486, 520, 683, 686, 1083, 1242, 1494, 2744, 2829
Sau3AI GATC 7 cut(s) 120, 133, 214, 1595, 1984, 2098, 2959
Sau96I GGNCC 7 cut(s) 25, 1100, 1685, 2300, 2540, 2668, 2765
SchI GAGTC 4 cut(s) 1007, 2015, 2509, 2742
ScrFI CCNGG 6 cut(s) 862, 1932, 1968, 2018, 2103, 2532
SduI GDGCHC 4 cut(s) 678, 1911, 2002, 2350
SexAI ACCWGGT 1 cut(s) 1966
SfcI CTRYAG 8 cut(s) 219, 390, 564, 1068, 1239, 1351, 1533, 2660
SfoI GGCGCC 1 cut(s) 994
SfuI TTCGAA 2 cut(s) 108, 1469
SgrAI CRCCGGYG 1 cut(s) 1124
SinI GGWCC 6 cut(s) 25, 1100, 2300, 2540, 2668, 2765
SmiMI CAYNNNNRTG 1 cut(s) 1046
SmlI CTYRAG 2 cut(s) 847, 2881
SmoI CTYRAG 2 cut(s) 847, 2881
SpeI ACTAGT 2 cut(s) 271, 902
SphI GCATGC 1 cut(s) 2016
SseBI AGGCCT 1 cut(s) 2655
SsiI CCGC 6 cut(s) 517, 966, 1082, 2185, 2223, 2495
SspDI GGCGCC 1 cut(s) 992
StuI AGGCCT 1 cut(s) 2655
StyD4I CCNGG 6 cut(s) 860, 1930, 1966, 2016, 2101, 2530
StyI CCWWGG 2 cut(s) 1561, 2466
TaaI ACNGT 5 cut(s) 266, 634, 925, 1355, 2126
TaiI ACGT 2 cut(s) 643, 1505
TaqI TCGA 8 cut(s) 108, 113, 136, 313, 345, 646, 1248, 1469
TatI WGTACW 1 cut(s) 2521
TauI GCSGC 1 cut(s) 1085
TfiI GAWTC 9 cut(s) 110, 560, 884, 1187, 1670, 1993, 2312, 2336, 2566
Tru1I TTAA 8 cut(s) 78, 174, 1116, 1824, 2276, 2330, 2448, 2705
Tru9I TTAA 8 cut(s) 78, 174, 1116, 1824, 2276, 2330, 2448, 2705
TscAI CASTG 5 cut(s) 532, 832, 930, 2262, 2466
TseFI GTSAC 3 cut(s) 251, 2032, 2512
TseI GCWGC 8 cut(s) 485, 519, 682, 685, 1241, 1493, 2743, 2828
Tsp45I GTSAC 3 cut(s) 251, 2032, 2512
TspDTI ATGAA 9 cut(s) 200, 810, 890, 987, 1179, 1271, 1316, 1565, 2350
TspGWI ACGGA 3 cut(s) 252, 750, 1907
TspRI CASTG 5 cut(s) 532, 832, 930, 2262, 2466
VneI GTGCAC 1 cut(s) 2346
VpaK11BI GGWCC 6 cut(s) 25, 1100, 2300, 2540, 2668, 2765
XagI CCTNNNNNAGG 1 cut(s) 2663
XapI RAATTY 7 cut(s) 41, 207, 375, 539, 1111, 1229, 2250
XbaI TCTAGA 2 cut(s) 1001, 1477
XceI RCATGY 1 cut(s) 2016
XmiI GTMKAC 3 cut(s) 268, 1248, 1780
XmnI GAANNNNTTC 1 cut(s) 329
Zsp2I ATGCAT 3 cut(s) 696, 1207, 2908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.