Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001132

Physical Location & Seq

Genomic Coordinates Forward (+)

2279906 .. 2281801

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGTGTCGCAATCGACGAGAGTCTTGCTCTTTGCTGCTTGCTCGTCGTTGTTCGCTCGCCGCCCTCTGGGCCTCGGCGTATTAGGTCCAGTATTTCGCGACGGTGGGGAACGGCGTCAGGAGCTGCTGGTAGATCGGCAAACGGCGGGCCTGATTGGCGTGGTGGCTGGCCATTGTATTTGGGATTATGGTTGGTTCAGAAATTTCTACTTTGTTATTTGAGAAAAGAAGACATGAATTCGGAGCATGCTAGTTCCGGAGGCGGAAGATTGAACATGCTAGGGTGCACGTTTATAATGCAGCAACAACAATCTTTTGCACGAAGTGATGGTGTATTTTCTTGGGATGCAACTTCTGATCTTAAGTTTATAATGCAGCAACAACAATCTTTTGCACGAAGATTTGGTGTATTTTCAGTGAGCCTGTACTGGGTTTGTGATCGAAGAATGGCTATATCTTCTTATGTTAATGTTCATTATTTTGAGAAGTTTTGTTCTTCTAATTTATCTCTGAAGATCAATAGCCCATTTGTGAGGACTGAGGACCAACTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.86

Weight (kDa)

9.35

Isoelectric Point (pI)

72.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48187
fragaria_vesca	FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880
malus_domestica	MD06G1173400.v1.1 MD14G1179900.v1.1
prunus_persica	Prupe.5G172900_v2.0.a1
pyrus_communis	pycom06g15450 pycom06g15460 pycom14g14970
rosa_chinensis	RchiOBHm_Chr3g0469511 RchiOBHm_Chr7g0223481 RchiOBHm_Chr7g0223491 RchiOBHm_Chr7g0232001
rosa_laevigata	RLG00000001961 RLG00000001963
rosa_multiflora	Rmu_co8352987.1_g000001 Rmu_sc0001825.1_g000011 Rmu_sc0002224.1_g000002 Rmu_sc0007408.1_g000001 Rmu_sc0015894.1_g000001 Rmu_sc0023342.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023900 Rroxscaffold_3G00235670 Rroxscaffold_3G00235680 Rroxscaffold_4G00279490
rosa_rugosa	Rorug07G0217400 Rorug07G0217500 Rorug07G0217500 Rorug07G0217600
rosa_samantha	Rh1AG475500 Rh2BG423300 Rh3AG151300 Rh3BG174900 Rh3CG166000 Rh4DG075500 Rh6BG142500 Rh6DG126600 Rh7AG360800 Rh7AG361000 Rh7BG351300 Rh7BG351500 Rh7CG379200 Rh7CG379500 Rh7DG356100 Rh7DG356300
rosa_wichuraiana	Rw7G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	296, 371
AccII	CGCG	1 cut(s)	100
AccIII	TCCGGA	1 cut(s)	257
AciI	CCGC	3 cut(s)	62, 147, 264
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	203, 238
AcuI	CTGAAG	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	116
AdeI	CACNNNGTG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	68, 430
AflII	CTTAAG	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw21I	GWGCWC	1 cut(s)	290
Alw44I	GTGCAC	1 cut(s)	286
AlwNI	CAGNNNCTG	1 cut(s)	125
Aor13HI	TCCGGA	1 cut(s)	257
AoxI	GGCC	3 cut(s)	71, 149, 170
ApaLI	GTGCAC	1 cut(s)	286
ApeKI	GCWGC	4 cut(s)	36, 125, 301, 376
ApoI	RAATTY	2 cut(s)	203, 238
AspS9I	GGNCC	4 cut(s)	71, 87, 149, 544
AvaII	GGWCC	2 cut(s)	87, 544
BaeGI	GKGCMC	1 cut(s)	290
BalI	TGGCCA	1 cut(s)	172
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	290
BbvI	GCAGC	4 cut(s)	23, 112, 313, 388
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	2 cut(s)	129, 160
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BfaI	CTAG	2 cut(s)	252, 281
BfrI	CTTAAG	1 cut(s)	362
BglI	GCCNNNNNGGC	2 cut(s)	70, 157
BisI	GCNGC	5 cut(s)	37, 62, 126, 302, 377
BlsI	GCNGC	5 cut(s)	38, 63, 127, 303, 378
Bme18I	GGWCC	2 cut(s)	87, 544
BmgT120I	GGNCC	4 cut(s)	71, 87, 149, 544
BmrI	ACTGGG	1 cut(s)	439
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	439
BoxI	GACNNNNGTC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 430
Bse1I	ACTGG	2 cut(s)	90, 434
BseAI	TCCGGA	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	2 cut(s)	68, 430
BseMII	CTCAG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	90, 434
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	4 cut(s)	23, 112, 313, 388
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	73, 151, 172
BsiHKAI	GWGCWC	1 cut(s)	290
BsiSI	CCGG	1 cut(s)	258
BslI	CCNNNNNNNGG	2 cut(s)	68, 430
BsnI	GGCC	3 cut(s)	73, 151, 172
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp13I	TCCGGA	1 cut(s)	257
Bsp143I	GATC	4 cut(s)	134, 358, 439, 516
Bsp68I	TCGCGA	1 cut(s)	100
BspACI	CCGC	3 cut(s)	62, 147, 264
BspANI	GGCC	3 cut(s)	73, 151, 172
BspCNI	CTCAG	1 cut(s)	532
BspEI	TCCGGA	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	100
BspTI	CTTAAG	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	90, 434
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	4 cut(s)	134, 358, 439, 516
BssNI	GRCGYC	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	116
BstAFI	CTTAAG	1 cut(s)	362
BstC8I	GCNNGC	5 cut(s)	41, 59, 149, 170, 249
BstDEI	CTNAG	1 cut(s)	540
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	100
BstKTI	GATC	4 cut(s)	137, 361, 442, 519
BstMBI	GATC	4 cut(s)	134, 358, 439, 516
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 122, 157
BstNSI	RCATGY	2 cut(s)	251, 280
BstPAI	GACNNNNGTC	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	290
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	4 cut(s)	23, 112, 313, 388
BstV2I	GAAGAC	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	73, 151, 172
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	423
BtuMI	TCGCGA	1 cut(s)	100
Cac8I	GCNNGC	5 cut(s)	41, 59, 149, 170, 249
CaiI	CAGNNNCTG	1 cut(s)	125
Cfr13I	GGNCC	4 cut(s)	71, 87, 149, 544
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	3 cut(s)	235, 248, 277
CviJI	RGCY	8 cut(s)	73, 125, 151, 168, 172, 423, 452, 525
CviKI_1	RGCY	8 cut(s)	73, 125, 151, 168, 172, 423, 452, 525
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	4 cut(s)	136, 360, 441, 518
DpnII	GATC	4 cut(s)	134, 358, 439, 516
DraIII	CACNNNGTG	1 cut(s)	326
EaeI	YGGCCR	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	279
Eco47I	GGWCC	2 cut(s)	87, 544
Eco57I	CTGAAG	1 cut(s)	533
EcoRI	GAATTC	1 cut(s)	238
FaeI	CATG	3 cut(s)	238, 251, 280
FaiI	YATR	8 cut(s)	190, 236, 249, 278, 296, 371, 455, 465
FatI	CATG	3 cut(s)	234, 247, 276
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	5 cut(s)	37, 62, 126, 302, 377
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	5 cut(s)	37, 62, 126, 302, 377
FspBI	CTAG	2 cut(s)	252, 281
GluI	GCNGC	5 cut(s)	37, 62, 126, 302, 377
HaeIII	GGCC	3 cut(s)	73, 151, 172
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	3 cut(s)	238, 251, 280
HinfI	GANTC	1 cut(s)	22
HpaII	CCGG	1 cut(s)	258
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	4 cut(s)	201, 244, 358, 513
Hpy188III	TCNNGA	3 cut(s)	99, 120, 258
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	3 cut(s)	20, 50, 105
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4IV	ACGT	1 cut(s)	290
HpyCH4V	TGCA	6 cut(s)	288, 301, 320, 350, 376, 395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 122, 157
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	1 cut(s)	290
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	3 cut(s)	238, 251, 280
Kpn2I	TCCGGA	1 cut(s)	257
Kzo9I	GATC	4 cut(s)	134, 358, 439, 516
LmnI	GCTCC	2 cut(s)	122, 244
LpnPI	CCDG	9 cut(s)	54, 103, 105, 114, 154, 165, 271, 415, 437
Lsp1109I	GCAGC	4 cut(s)	23, 112, 313, 388
LweI	GCATC	1 cut(s)	337
MaeI	CTAG	2 cut(s)	252, 281
MaeII	ACGT	1 cut(s)	290
MalI	GATC	4 cut(s)	136, 360, 441, 518
MboI	GATC	4 cut(s)	134, 358, 439, 516
MboII	GAAGA	7 cut(s)	242, 279, 411, 450, 456, 489, 526
MhlI	GDGCHC	1 cut(s)	290
MlsI	TGGCCA	1 cut(s)	172
MluCI	AATT	3 cut(s)	203, 238, 502
MluNI	TGGCCA	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	31
MnlI	CCTC	5 cut(s)	76, 84, 254, 528, 535
Mox20I	TGGCCA	1 cut(s)	172
MroI	TCCGGA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	172
MseI	TTAA	2 cut(s)	363, 468
Msp20I	TGGCCA	1 cut(s)	172
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	1 cut(s)	258
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	3 cut(s)	70, 122, 157
NdeII	GATC	4 cut(s)	134, 358, 439, 516
NlaIII	CATG	3 cut(s)	238, 251, 280
NmeAIII	GCCGAG	1 cut(s)	55
NruI	TCGCGA	1 cut(s)	100
NspI	RCATGY	2 cut(s)	251, 280
PaeI	GCATGC	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	5 cut(s)	38, 63, 127, 303, 378
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
PshAI	GACNNNNGTC	1 cut(s)	21
PsiI	TTATAA	2 cut(s)	296, 371
PspPI	GGNCC	4 cut(s)	71, 87, 149, 544
PstNI	CAGNNNCTG	1 cut(s)	125
RruI	TCGCGA	1 cut(s)	100
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SaqAI	TTAA	2 cut(s)	363, 468
SatI	GCNGC	5 cut(s)	37, 62, 126, 302, 377
Sau3AI	GATC	4 cut(s)	134, 358, 439, 516
Sau96I	GGNCC	4 cut(s)	71, 87, 149, 544
SchI	GAGTC	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	290
SetI	ASST	3 cut(s)	89, 127, 293
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	2 cut(s)	87, 544
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
SphI	GCATGC	1 cut(s)	251
Sse9I	AATT	3 cut(s)	203, 238, 502
SsiI	CCGC	3 cut(s)	62, 147, 264
SspMI	CTAG	2 cut(s)	252, 281
TaaI	ACNGT	1 cut(s)	105
TaiI	ACGT	1 cut(s)	293
TaqI	TCGA	2 cut(s)	15, 442
TasI	AATT	3 cut(s)	203, 238, 502
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	1 cut(s)	64
Tru1I	TTAA	2 cut(s)	363, 468
Tru9I	TTAA	2 cut(s)	363, 468
TscAI	CASTG	1 cut(s)	423
TseI	GCWGC	4 cut(s)	36, 125, 301, 376
TspDTI	ATGAA	2 cut(s)	251, 464
TspRI	CASTG	1 cut(s)	423
Vha464I	CTTAAG	1 cut(s)	362
VneI	GTGCAC	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	87, 544
XapI	RAATTY	2 cut(s)	203, 238
XceI	RCATGY	2 cut(s)	251, 280
XspI	CTAG	2 cut(s)	252, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.