Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001132

Physical Location & Seq

Genomic Coordinates Forward (+)

29547465 .. 29552048

Gene Structure 4584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00023900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAGTATCGCAATTGAGGAGAGAGGGGCGTCTTGCTCTTTGCTGCTTGCTCGTCGTTGTTCGCCGCCCTCTGGGCCTCGGCGTATTGGGTCCAGTATTTCGCGACGATGGGGAACGGCGTCAGGTGCTGCTCGTAGATCGGCTCCGCCTCCGAGATCAGCAAACGGCGGGCCTGATTGGCGTGGTGGCTGGCCATTGTATTTGGGATTGTGGAAGAGTCTGTTCCGACAAAGTAAAATTCATGGATGTAACCACAGCCACTTTCCACAGATCGGAGTAAAAGAAGTAGAGAGAGTGAGACTTTTGAAAGAGAAGAGTGGGAGCTTGTTGGCGAAGCAGATAGGATTAGATAAATCTCAAATACGATCGACAAACATACGCACTCTTTCTCAGCAGCAGCAGCAGCTAGCCGAGTTTATGGTTGACCTACTAGATCAAGACCCAAGCGAAGATGACAATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.03

Weight (kDa)

10.2

Isoelectric Point (pI)

75.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48187
fragaria_vesca	FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880
malus_domestica	MD06G1173400.v1.1 MD14G1179900.v1.1
prunus_persica	Prupe.5G172900_v2.0.a1
pyrus_communis	pycom06g15450 pycom06g15460 pycom14g14970
rosa_chinensis	RchiOBHm_Chr3g0469511 RchiOBHm_Chr7g0223481 RchiOBHm_Chr7g0223491 RchiOBHm_Chr7g0232001
rosa_laevigata	RLG00000001961 RLG00000001963
rosa_multiflora	Rmu_co8352987.1_g000001 Rmu_sc0001825.1_g000011 Rmu_sc0002224.1_g000002 Rmu_sc0007408.1_g000001 Rmu_sc0015894.1_g000001 Rmu_sc0023342.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023900 Rroxscaffold_3G00235670 Rroxscaffold_3G00235680 Rroxscaffold_4G00279490
rosa_rugosa	Rorug07G0217400 Rorug07G0217500 Rorug07G0217500 Rorug07G0217600
rosa_samantha	Rh1AG475500 Rh2BG423300 Rh3AG151300 Rh3BG174900 Rh3CG166000 Rh4DG075500 Rh6BG142500 Rh6DG126600 Rh7AG360800 Rh7AG361000 Rh7BG351300 Rh7BG351500 Rh7CG379200 Rh7CG379500 Rh7DG356100 Rh7DG356300
rosa_wichuraiana	Rw7G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	103
AciI	CCGC	3 cut(s)	65, 146, 168
AcoI	YGGCCR	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	237
AcyI	GRCGYC	2 cut(s)	29, 119
AfiI	CCNNNNNNNGG	2 cut(s)	71, 272
AgsI	TTSAA	1 cut(s)	307
AluBI	AGCT	3 cut(s)	324, 406, 462
AluI	AGCT	3 cut(s)	324, 406, 462
Alw26I	GTCTC	1 cut(s)	292
AlwNI	CAGNNNCTG	1 cut(s)	128
AoxI	GGCC	3 cut(s)	74, 170, 191
ApeKI	GCWGC	6 cut(s)	43, 128, 394, 397, 400, 403
ApoI	RAATTY	1 cut(s)	237
AspS9I	GGNCC	3 cut(s)	74, 90, 170
AsuNHI	GCTAGC	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	193
BbvI	GCAGC	6 cut(s)	30, 115, 406, 409, 412, 415
BccI	CCATC	1 cut(s)	102
BceAI	ACGGC	2 cut(s)	132, 181
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	2 cut(s)	407, 431
BglI	GCCNNNNNGGC	2 cut(s)	73, 178
BisI	GCNGC	7 cut(s)	44, 65, 129, 395, 398, 401, 404
BlsI	GCNGC	7 cut(s)	45, 66, 130, 396, 399, 402, 405
Bme18I	GGWCC	1 cut(s)	90
BmgT120I	GGNCC	3 cut(s)	74, 90, 170
BmiI	GGNNCC	2 cut(s)	91, 144
BmtI	GCTAGC	1 cut(s)	410
BsaHI	GRCGYC	2 cut(s)	29, 119
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 272
Bse1I	ACTGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	1 cut(s)	251
BseLI	CCNNNNNNNGG	2 cut(s)	71, 272
BseMII	CTCAG	1 cut(s)	404
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	6 cut(s)	30, 115, 406, 409, 412, 415
Bsh1236I	CGCG	1 cut(s)	103
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	76, 172, 193
BsiEI	CGRYCG	1 cut(s)	368
BslI	CCNNNNNNNGG	2 cut(s)	71, 272
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	3 cut(s)	76, 172, 193
Bsp143I	GATC	5 cut(s)	137, 155, 270, 365, 433
Bsp68I	TCGCGA	1 cut(s)	103
BspACI	CCGC	3 cut(s)	65, 146, 168
BspANI	GGCC	3 cut(s)	76, 172, 193
BspCNI	CTCAG	1 cut(s)	403
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	91, 144
BspOI	GCTAGC	1 cut(s)	410
BsrI	ACTGG	1 cut(s)	93
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	5 cut(s)	137, 155, 270, 365, 433
BssNI	GRCGYC	2 cut(s)	29, 119
Bst6I	CTCTTC	2 cut(s)	209, 308
BstACI	GRCGYC	2 cut(s)	29, 119
BstC8I	GCNNGC	4 cut(s)	48, 170, 191, 408
BstDEI	CTNAG	1 cut(s)	390
BstF5I	GGATG	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	5 cut(s)	140, 158, 273, 368, 436
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	5 cut(s)	137, 155, 270, 365, 433
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	5 cut(s)	73, 125, 178, 400, 403
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	6 cut(s)	30, 115, 406, 409, 412, 415
BsuRI	GGCC	3 cut(s)	76, 172, 193
BtsCI	GGATG	1 cut(s)	251
BtuMI	TCGCGA	1 cut(s)	103
Cac8I	GCNNGC	4 cut(s)	48, 170, 191, 408
CaiI	CAGNNNCTG	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	74, 90, 170
CseI	GACGC	2 cut(s)	18, 108
CviAII	CATG	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	390
DpnI	GATC	5 cut(s)	139, 157, 272, 367, 435
DpnII	GATC	5 cut(s)	137, 155, 270, 365, 433
EaeI	YGGCCR	1 cut(s)	191
Eam1104I	CTCTTC	2 cut(s)	209, 308
EarI	CTCTTC	2 cut(s)	209, 308
EciI	GGCGGA	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	90
FaeI	CATG	1 cut(s)	245
FaiI	YATR	3 cut(s)	243, 377, 419
FatI	CATG	1 cut(s)	241
FauI	CCCGC	1 cut(s)	161
Fnu4HI	GCNGC	7 cut(s)	44, 65, 129, 395, 398, 401, 404
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	7 cut(s)	44, 65, 129, 395, 398, 401, 404
FspBI	CTAG	2 cut(s)	407, 431
GluI	GCNGC	7 cut(s)	44, 65, 129, 395, 398, 401, 404
HaeIII	GGCC	3 cut(s)	76, 172, 193
HgaI	GACGC	2 cut(s)	18, 108
Hin1I	GRCGYC	2 cut(s)	29, 119
Hin1II	CATG	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	424
HindII	GTYRAC	1 cut(s)	424
HinfI	GANTC	1 cut(s)	217
Hpy166II	GTNNAC	1 cut(s)	424
Hpy188I	TCNGA	3 cut(s)	153, 227, 275
Hpy188III	TCNNGA	2 cut(s)	102, 437
Hpy8I	GTNNAC	1 cut(s)	424
Hpy99I	CGWCG	2 cut(s)	57, 108
HpyF10VI	GCNNNNNNNGC	5 cut(s)	73, 125, 178, 400, 403
HpyF3I	CTNAG	1 cut(s)	390
Hsp92I	GRCGYC	2 cut(s)	29, 119
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	5 cut(s)	137, 155, 270, 365, 433
LmnI	GCTCC	2 cut(s)	148, 321
LpnPI	CCDG	5 cut(s)	57, 106, 108, 175, 186
Lsp1109I	GCAGC	6 cut(s)	30, 115, 406, 409, 412, 415
MaeI	CTAG	2 cut(s)	407, 431
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	5 cut(s)	139, 157, 272, 367, 435
MboI	GATC	5 cut(s)	137, 155, 270, 365, 433
MboII	GAAGA	3 cut(s)	226, 325, 461
MfeI	CAATTG	1 cut(s)	12
MlsI	TGGCCA	1 cut(s)	193
MluCI	AATT	2 cut(s)	12, 237
MluNI	TGGCCA	1 cut(s)	193
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	5 cut(s)	10, 17, 79, 87, 159
Mox20I	TGGCCA	1 cut(s)	193
MscI	TGGCCA	1 cut(s)	193
Msp20I	TGGCCA	1 cut(s)	193
MunI	CAATTG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	5 cut(s)	73, 125, 178, 400, 403
NdeII	GATC	5 cut(s)	137, 155, 270, 365, 433
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	2 cut(s)	91, 144
NmeAIII	GCCGAG	2 cut(s)	58, 436
NruI	TCGCGA	1 cut(s)	103
PkrI	GCNGC	7 cut(s)	45, 66, 130, 396, 399, 402, 405
Ple19I	CGATCG	1 cut(s)	368
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PspN4I	GGNNCC	2 cut(s)	91, 144
PspPI	GGNCC	3 cut(s)	74, 90, 170
PstNI	CAGNNNCTG	1 cut(s)	128
PvuI	CGATCG	1 cut(s)	368
RruI	TCGCGA	1 cut(s)	103
SatI	GCNGC	7 cut(s)	44, 65, 129, 395, 398, 401, 404
Sau3AI	GATC	5 cut(s)	137, 155, 270, 365, 433
Sau96I	GGNCC	3 cut(s)	74, 90, 170
SchI	GAGTC	1 cut(s)	226
SetI	ASST	5 cut(s)	127, 326, 408, 429, 464
SinI	GGWCC	1 cut(s)	90
Sse9I	AATT	2 cut(s)	12, 237
SsiI	CCGC	3 cut(s)	65, 146, 168
SspMI	CTAG	2 cut(s)	407, 431
TaqI	TCGA	1 cut(s)	368
TasI	AATT	2 cut(s)	12, 237
TauI	GCSGC	1 cut(s)	67
TseI	GCWGC	6 cut(s)	43, 128, 394, 397, 400, 403
TspDTI	ATGAA	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	1 cut(s)	237
XspI	CTAG	2 cut(s)	407, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.