Rorug07G0217600

Serine threonine-protein kinase ATM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001132
Physical Location & Seq
Reverse (-)
19445227 .. 19447609
2383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0217600.1

Sequence Viewer

Length: 1638 bp
ATGGATGCTGATGAACCTTCATTTCTGCAAGGGAATGAAGACAGCGGTGATGGAAAAGAATCTAATTTAGAGATCATGAGGATGACAAAGAGAAAGAAAGCACGCAACGGAGAGGATGAGAAGGTGGCAGTTGAGCAAGAAAAGGAAACAAAGAAGCTGGAAAACTTTTTGTTTGGATCAATCTATTCCCCAGTTGAGTTTGGGAAGGAGGATGAGGAAGAAGCTGTAGACCAGGTCGATAAAGGCTCTGCTTTATTCTTTGTTGACCGTTCTGCAAGTATTGTGCACCCTGGCAATGATGATGATGCAAAATTCTCAGAAGAGGATACTAAGCAAAGGAAACCTGTGTGGATGGATGAGGAAGAGGAAAAGGCCAACATTAATATCGCTAGGGTTAATAGATTGAGGAAGCTGAGGAAGGAAGAGGATGAGAATTTTATTTCTGGTTCTGAGTATGTTTTACGATTAAGGGCTCAGCATGCTAAGCTGAATCCAGGTACAGAATGGTCTCAATTTGATTCACAGTCGAGGTACAATAGATACTCTGATGATGAATCCTCCGATGAAGAAAATGGCTTAGTAGTGCCCCGTGGCTACAAGGAGGTTGGAGCTGTTGATGATCTCCTTCGTACAAATGAGGACCTTGTTGTGAAGAGTGGTGGAAAGTTGCTGCCTGGACTTCTTGAATATTCAACACTTGTGGATGCAAATGGAGAGGAACCTCGTAATGGTCCAATTAATTCGGTGCAATTTCATAGAAATGCTCAGTTGCTTCTTGCTGCTGGATTGGATCGAACGCTTAGATTTTTTCAGATTGATGGCAAACGGAATACTAAAATTGAAAGCATTTTCATTGATGATTGTCCCATACGGAAGGCAGCTTTCTTGCCTGATGGTTCTCAGGTTATTATAGCTGGAAGGAGGAAATTCTTTTATAGTTTTGATTTAGTAAAGGCGAAAGTTGATAAAATAGGTCCCCTGGTTGGTAGAGAAGAGAAAAGCTTGGAAGTTTTTGAGGTTTCCCCTGATTCAAGTACGATTGCGTTCGTGGGAAATGAAGGTTATATCTTATTGGTTTCCACTAAAACAAAGGAATTGATTGGGACACTCAAGATGAATGGAACAGTTCGCTCTTTAGCTTTTTCCAATGATGGGAAGCAACTATTGAGCTCTGGTGGAGATGGACAGGTTTACCAGTGGGATCTGAGAACAGGGGCCTGCTTCTATAAAATGGTTGATGAAGGTTGTATCAATGGTACAGCCCTTTGTGCATCTCCAAATGGATCCTTGTTTGCTGCTGGTTCAGACAGTGGGATTGTTAATATTTATAATAGAGATGAGGTTTTAGGAGGCAAAAGAAAACCAATCAAGACTATCGAGAATCTTACAACCAAAGTAGATTTTATGAAGTTCAATAATGATGCTCAAATTTTAGCTATTTGTTCGAGCATGAAGAAGGACAGCTTAAAGTTGGTACATGTTCCATCATACACTGTATTTTCCAACTGGCCTCCTCAAAGGCAGGTCCTGCATTATCCTCGCTGTTTGGATTTTAGTCCCGGTGGAGGTTTCATGGCTGTGGGCAATGCTGCTGGAAAAGTGTTGCTGTACAAGTTGCATCATTACCATCATGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

545

Amino Acids

60.88

Weight (kDa)

5.48

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 243 - 411 5.1e-07 CDC20/Fizzy WD40 domain
WD40_Prp19 PF24814 244 - 482 1.2e-19 Prp19 WD40 domain
Beta-prop_EML PF23409 245 - 434 5.6e-06 Echinoderm microtubule-associated protein first beta-propeller
WD40_WDHD1_1st PF24817 248 - 409 3.3e-09 WDHD1 first WD40 domain
WD40_Gbeta PF25391 249 - 443 6.9e-07 G protein beta WD-40 repeat protein
Beta-prop_EML_2 PF23414 250 - 406 1.3e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR5 PF25175 292 - 540 5.3e-12 WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_1st PF25171 325 - 407 8.4e-08 WDR36/Utp21 first beta-propeller
Beta-prop_WDR3_1st PF25173 331 - 411 3.7e-07 WDR3 first beta-propeller domain
WDR55 PF24796 338 - 482 3.6e-08 WDR55
Beta-prop_THOC3 PF25174 339 - 526 6.5e-18 THOC3 beta-propeller domain
WD40 PF00400 366 - 401 5.9e-06 WD domain, G-beta repeat
Beta-prop_EML_2 PF23414 388 - 483 4.3e-07 Echinoderm microtubule-associated protein second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1329
Acc36I ACCTGC 1 cut(s) 1513
AccI GTMKAC 1 cut(s) 228
AciI CCGC 1 cut(s) 45
AclWI GGATC 5 cut(s) 184, 798, 1209, 1278, 1291
AcsI RAATTY 4 cut(s) 311, 433, 926, 1428
AfaI GTAC 7 cut(s) 499, 533, 631, 1036, 1258, 1476, 1610
AfiI CCNNNNNNNGG 4 cut(s) 728, 983, 1152, 1565
AflIII ACRYGT 1 cut(s) 1477
AgsI TTSAA 5 cut(s) 686, 693, 842, 1032, 1414
AjnI CCWGG 5 cut(s) 231, 289, 493, 673, 978
Alw21I GWGCWC 2 cut(s) 288, 1172
Alw26I GTCTC 1 cut(s) 513
Alw44I GTGCAC 1 cut(s) 284
AlwI GGATC 5 cut(s) 184, 798, 1209, 1278, 1291
AlwNI CAGNNNCTG 1 cut(s) 1528
AoxI GGCC 3 cut(s) 372, 1215, 1508
ApaLI GTGCAC 1 cut(s) 284
ApeKI GCWGC 5 cut(s) 670, 779, 878, 1295, 1589
ApoI RAATTY 4 cut(s) 311, 433, 926, 1428
AseI ATTAAT 2 cut(s) 381, 738
AspS9I GGNCC 5 cut(s) 640, 731, 974, 1215, 1525
AsuC2I CCSGG 1 cut(s) 1560
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 4 cut(s) 640, 731, 974, 1525
BaeGI GKGCMC 2 cut(s) 288, 588
BamHI GGATCC 1 cut(s) 1283
BanII GRGCYC 2 cut(s) 475, 1172
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 2 cut(s) 288, 1172
BbvCI CCTCAGC 1 cut(s) 413
BbvI GCAGC 5 cut(s) 657, 766, 890, 1282, 1576
BccI CCATC 8 cut(s) 44, 346, 812, 887, 1145, 1175, 1492, 1635
BcgI CGANNNNNNTGC 2 cut(s) 1520, 1554
BciT130I CCWGG 5 cut(s) 233, 291, 495, 675, 980
BciVI GTATCC 1 cut(s) 319
BcnI CCSGG 1 cut(s) 1560
BcoDI GTCTC 1 cut(s) 513
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 225
BfuAI ACCTGC 1 cut(s) 1513
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 5 cut(s) 671, 780, 879, 1296, 1590
BlpI GCTNAGC 2 cut(s) 474, 483
BlsI GCNGC 5 cut(s) 672, 781, 880, 1297, 1591
Bme1390I CCNGG 6 cut(s) 233, 291, 495, 675, 980, 1560
Bme18I GGWCC 4 cut(s) 640, 731, 974, 1525
BmgT120I GGNCC 5 cut(s) 640, 731, 974, 1215, 1525
BmiI GGNNCC 4 cut(s) 720, 976, 1216, 1285
BmrFI CCNGG 6 cut(s) 233, 291, 495, 675, 980, 1560
BmrI ACTGGG 1 cut(s) 185
BmsI GCATC 5 cut(s) 295, 694, 1280, 1411, 1627
BmuI ACTGGG 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 413
Bpu1102I GCTNAGC 2 cut(s) 474, 483
BpuEI CTTGAG 1 cut(s) 1094
BpuMI CCSGG 1 cut(s) 1560
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 3 cut(s) 289, 589, 978
Bsc4I CCNNNNNNNGG 4 cut(s) 728, 983, 1152, 1565
Bse1I ACTGG 3 cut(s) 191, 1195, 1511
Bse3DI GCAATG 2 cut(s) 301, 1591
BseBI CCWGG 5 cut(s) 233, 291, 495, 675, 980
BseDI CCNNGG 3 cut(s) 289, 589, 978
BseGI GGATG 8 cut(s) 10, 87, 121, 217, 357, 361, 433, 709
BseLI CCNNNNNNNGG 4 cut(s) 728, 983, 1152, 1565
BseMI GCAATG 2 cut(s) 301, 1591
BseMII CTCAG 7 cut(s) 330, 404, 441, 488, 779, 914, 1196
BseNI ACTGG 3 cut(s) 191, 1195, 1511
BseRI GAGGAG 1 cut(s) 1503
BseSI GKGCMC 2 cut(s) 288, 588
BseXI GCAGC 5 cut(s) 657, 766, 890, 1282, 1576
BshFI GGCC 3 cut(s) 374, 1217, 1510
BsiHKAI GWGCWC 2 cut(s) 288, 1172
BsiSI CCGG 1 cut(s) 1560
BslFI GGGAC 4 cut(s) 849, 960, 1117, 1542
BslI CCNNNNNNNGG 4 cut(s) 728, 983, 1152, 1565
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 4 cut(s) 849, 960, 1117, 1542
BsnI GGCC 3 cut(s) 374, 1217, 1510
Bso31I GGTCTC 1 cut(s) 513
Bsp1286I GDGCHC 4 cut(s) 288, 475, 588, 1172
Bsp1407I TGTACA 1 cut(s) 1608
Bsp143I GATC 6 cut(s) 72, 176, 619, 790, 1201, 1283
Bsp1720I GCTNAGC 2 cut(s) 474, 483
BspACI CCGC 1 cut(s) 45
BspANI GGCC 3 cut(s) 374, 1217, 1510
BspCNI CTCAG 7 cut(s) 329, 405, 442, 487, 778, 913, 1197
BspHI TCATGA 1 cut(s) 75
BspLI GGNNCC 4 cut(s) 720, 976, 1216, 1285
BspMI ACCTGC 1 cut(s) 1513
BspPI GGATC 5 cut(s) 184, 798, 1209, 1278, 1291
BspTNI GGTCTC 1 cut(s) 513
BsrDI GCAATG 2 cut(s) 301, 1591
BsrGI TGTACA 1 cut(s) 1608
BsrI ACTGG 3 cut(s) 191, 1195, 1511
BssECI CCNNGG 3 cut(s) 289, 589, 978
BssMI GATC 6 cut(s) 72, 176, 619, 790, 1201, 1283
Bst2UI CCWGG 5 cut(s) 233, 291, 495, 675, 980
Bst4CI ACNGT 5 cut(s) 269, 525, 1126, 1310, 1495
Bst6I CTCTTC 5 cut(s) 315, 357, 417, 647, 987
BstAPI GCANNNNNTGC 1 cut(s) 1528
BstAUI TGTACA 1 cut(s) 1608
BstC8I GCNNGC 3 cut(s) 103, 480, 1219
BstDSI CCRYGG 1 cut(s) 589
BstF5I GGATG 8 cut(s) 10, 87, 121, 217, 357, 361, 433, 709
BstKTI GATC 6 cut(s) 75, 179, 622, 793, 1204, 1286
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 6 cut(s) 72, 176, 619, 790, 1201, 1283
BstMWI GCNNNNNNNGC 4 cut(s) 479, 484, 1268, 1528
BstNI CCWGG 5 cut(s) 233, 291, 495, 675, 980
BstNSI RCATGY 2 cut(s) 482, 1481
BstSCI CCNGG 6 cut(s) 231, 289, 493, 673, 978, 1558
BstSFI CTRYAG 1 cut(s) 225
BstSLI GKGCMC 2 cut(s) 288, 588
BstV1I GCAGC 5 cut(s) 657, 766, 890, 1282, 1576
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 2 cut(s) 1201, 1283
BstYI RGATCY 2 cut(s) 1201, 1283
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 3 cut(s) 374, 1217, 1510
BtgI CCRYGG 1 cut(s) 589
BtsCI GGATG 8 cut(s) 10, 87, 121, 217, 357, 361, 433, 709
BtsIMutI CAGTG 3 cut(s) 1202, 1315, 1491
BveI ACCTGC 1 cut(s) 1513
Cac8I GCNNGC 3 cut(s) 103, 480, 1219
CaiI CAGNNNCTG 1 cut(s) 1528
CciI TCATGA 1 cut(s) 75
Cfr13I GGNCC 5 cut(s) 640, 731, 974, 1215, 1525
CsiI ACCWGGT 1 cut(s) 231
Csp6I GTAC 7 cut(s) 498, 532, 630, 1035, 1257, 1475, 1609
CspCI CAANNNNNGTGG 2 cut(s) 681, 716
CviAII CATG 6 cut(s) 76, 479, 1450, 1478, 1573, 1631
CviQI GTAC 7 cut(s) 498, 532, 630, 1035, 1257, 1475, 1609
DpnI GATC 6 cut(s) 74, 178, 621, 792, 1203, 1285
DpnII GATC 6 cut(s) 72, 176, 619, 790, 1201, 1283
Eam1104I CTCTTC 5 cut(s) 315, 357, 417, 647, 987
EarI CTCTTC 5 cut(s) 315, 357, 417, 647, 987
Ecl136II GAGCTC 1 cut(s) 1170
Eco24I GRGCYC 2 cut(s) 475, 1172
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 4 cut(s) 640, 731, 974, 1525
Eco53kI GAGCTC 1 cut(s) 1170
EcoICRI GAGCTC 1 cut(s) 1170
EcoO109I RGGNCCY 4 cut(s) 640, 974, 1215, 1525
EcoRII CCWGG 5 cut(s) 231, 289, 493, 673, 978
EcoT22I ATGCAT 1 cut(s) 1636
EcoT38I GRGCYC 2 cut(s) 475, 1172
FaeI CATG 6 cut(s) 79, 482, 1453, 1481, 1576, 1634
FalI AAGNNNNNCTT 2 cut(s) 1448, 1480
FaqI GGGAC 4 cut(s) 849, 960, 1117, 1542
FatI CATG 6 cut(s) 75, 478, 1449, 1477, 1572, 1630
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 5 cut(s) 671, 780, 879, 1296, 1590
FokI GGATG 8 cut(s) 17, 94, 128, 224, 364, 368, 440, 716
FriOI GRGCYC 2 cut(s) 475, 1172
Fsp4HI GCNGC 5 cut(s) 671, 780, 879, 1296, 1590
FspBI CTAG 1 cut(s) 390
GluI GCNGC 5 cut(s) 671, 780, 879, 1296, 1590
HaeIII GGCC 3 cut(s) 374, 1217, 1510
HapII CCGG 1 cut(s) 1560
Hin1II CATG 6 cut(s) 79, 482, 1453, 1481, 1576, 1634
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HindIII AAGCTT 1 cut(s) 1000
HinfI GANTC 6 cut(s) 59, 490, 518, 554, 1028, 1381
HpaII CCGG 1 cut(s) 1560
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 4 cut(s) 229, 265, 286, 1192
Hpy188I TCNGA 7 cut(s) 319, 451, 547, 562, 813, 1206, 1306
Hpy188III TCNNGA 5 cut(s) 76, 683, 1111, 1369, 1378
Hpy8I GTNNAC 4 cut(s) 229, 265, 286, 1192
HpyCH4III ACNGT 5 cut(s) 269, 525, 1126, 1310, 1495
HpyF10VI GCNNNNNNNGC 4 cut(s) 479, 484, 1268, 1528
Hsp92II CATG 6 cut(s) 79, 482, 1453, 1481, 1576, 1634
Kzo9I GATC 6 cut(s) 72, 176, 619, 790, 1201, 1283
LmnI GCTCC 1 cut(s) 608
Lsp1109I GCAGC 5 cut(s) 657, 766, 890, 1282, 1576
LweI GCATC 5 cut(s) 295, 694, 1280, 1411, 1627
MabI ACCWGGT 1 cut(s) 231
MaeI CTAG 1 cut(s) 390
MalI GATC 6 cut(s) 74, 178, 621, 792, 1203, 1285
MboI GATC 6 cut(s) 72, 176, 619, 790, 1201, 1283
MboII GAAGA 9 cut(s) 50, 230, 332, 374, 434, 578, 664, 1004, 1465
MflI RGATCY 2 cut(s) 1201, 1283
MhlI GDGCHC 4 cut(s) 288, 475, 588, 1172
MmeI TCCRAC 2 cut(s) 586, 1527
Mph1103I ATGCAT 1 cut(s) 1636
MseI TTAA 6 cut(s) 381, 396, 467, 738, 1320, 1466
MslI CAYNNNNRTG 3 cut(s) 80, 759, 1577
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 1 cut(s) 1560
MspR9I CCNGG 6 cut(s) 233, 291, 495, 675, 980, 1560
MvaI CCWGG 5 cut(s) 233, 291, 495, 675, 980
MwoI GCNNNNNNNGC 4 cut(s) 479, 484, 1268, 1528
NciI CCSGG 1 cut(s) 1560
NdeII GATC 6 cut(s) 72, 176, 619, 790, 1201, 1283
NlaIII CATG 6 cut(s) 79, 482, 1453, 1481, 1576, 1634
NlaIV GGNNCC 4 cut(s) 720, 976, 1216, 1285
NsiI ATGCAT 1 cut(s) 1636
NspI RCATGY 2 cut(s) 482, 1481
PaeI GCATGC 1 cut(s) 482
PagI TCATGA 1 cut(s) 75
PciI ACATGT 1 cut(s) 1477
PfeI GAWTC 6 cut(s) 59, 490, 518, 554, 1028, 1381
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 5 cut(s) 672, 781, 880, 1297, 1591
PpuMI RGGWCCY 3 cut(s) 640, 974, 1525
PscI ACATGT 1 cut(s) 1477
PshBI ATTAAT 2 cut(s) 381, 738
PsiI TTATAA 1 cut(s) 1329
Psp124BI GAGCTC 1 cut(s) 1172
Psp5II RGGWCCY 3 cut(s) 640, 974, 1525
Psp6I CCWGG 5 cut(s) 231, 289, 493, 673, 978
PspGI CCWGG 5 cut(s) 231, 289, 493, 673, 978
PspN4I GGNNCC 4 cut(s) 720, 976, 1216, 1285
PspPI GGNCC 5 cut(s) 640, 731, 974, 1215, 1525
PspPPI RGGWCCY 3 cut(s) 640, 974, 1525
PstNI CAGNNNCTG 1 cut(s) 1528
PsuI RGATCY 2 cut(s) 1201, 1283
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 7 cut(s) 499, 533, 631, 1036, 1258, 1476, 1610
RsaNI GTAC 7 cut(s) 498, 532, 630, 1035, 1257, 1475, 1609
RseI CAYNNNNRTG 3 cut(s) 80, 759, 1577
SacI GAGCTC 1 cut(s) 1172
SaqAI TTAA 6 cut(s) 381, 396, 467, 738, 1320, 1466
SatI GCNGC 5 cut(s) 671, 780, 879, 1296, 1590
Sau3AI GATC 6 cut(s) 72, 176, 619, 790, 1201, 1283
Sau96I GGNCC 5 cut(s) 640, 731, 974, 1215, 1525
ScrFI CCNGG 6 cut(s) 233, 291, 495, 675, 980, 1560
SduI GDGCHC 4 cut(s) 288, 475, 588, 1172
SexAI ACCWGGT 1 cut(s) 231
SfaNI GCATC 5 cut(s) 295, 694, 1280, 1411, 1627
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 4 cut(s) 640, 731, 974, 1525
SmiMI CAYNNNNRTG 3 cut(s) 80, 759, 1577
SmlI CTYRAG 1 cut(s) 1109
SmoI CTYRAG 1 cut(s) 1109
SphI GCATGC 1 cut(s) 482
SsiI CCGC 1 cut(s) 45
SspI AATATT 2 cut(s) 689, 1324
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 1172
StyD4I CCNGG 6 cut(s) 231, 289, 493, 673, 978, 1558
TaaI ACNGT 5 cut(s) 269, 525, 1126, 1310, 1495
TaqI TCGA 5 cut(s) 237, 527, 793, 1377, 1445
TatI WGTACW 1 cut(s) 1608
TfiI GAWTC 6 cut(s) 59, 490, 518, 554, 1028, 1381
Tru1I TTAA 6 cut(s) 381, 396, 467, 738, 1320, 1466
Tru9I TTAA 6 cut(s) 381, 396, 467, 738, 1320, 1466
TscAI CASTG 3 cut(s) 1202, 1315, 1498
TseI GCWGC 5 cut(s) 670, 779, 878, 1295, 1589
TspGWI ACGGA 3 cut(s) 123, 841, 886
TspRI CASTG 3 cut(s) 1202, 1315, 1498
Tth111I GACNNNGTC 1 cut(s) 233
VneI GTGCAC 1 cut(s) 284
VpaK11BI GGWCC 4 cut(s) 640, 731, 974, 1525
VspI ATTAAT 2 cut(s) 381, 738
XapI RAATTY 4 cut(s) 311, 433, 926, 1428
XceI RCATGY 2 cut(s) 482, 1481
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XmiI GTMKAC 1 cut(s) 228
XspI CTAG 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 1636
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.