FvH4_5g29880

Serine threonine-protein kinase ATM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001132
Physical Location & Seq
Forward (+)
20759822 .. 20763592
3771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29880.t1

Sequence Viewer

Length: 2526 bp
ATGGCTGAAGATGTTGGAGTTGAGAAAATGGTTGAAGATCTTAGGAACGAAGCTAAGGCTTCGGAATTAGCTGTGACTGTGGGTGCCCAGAGAGAAGATGAGGGAATTGGAAACATGTTTCAAGATGGTGGGGTTGAGAATAAGTTTGAAGATGCATTCGAATCGAGTCAGAGAGAAGAATTTGGCAATGATGAGCTGGAGAAGGCCGAAGATGGTGGAGATTATGAGTTTTGTGTGGGTGACATTGTATGGGTTGAGACGAAAATAAAGACATGGTGGCCTGGTAAAATTCATGATCCTGCAGATGCATCGGAGCTGGGGATGGTTAGTCATCAAGAAGGCTGTTTACTTGTCGGCTACTTTGGGATGGGGCATGTTGCTTGGTGCCGTCGACGCCAACTGAAGCCTTTTGCGCTGTTGTTTGAGCAGATTTCAGGGCAAAGCAAGGCTAGGATTTTCGTTAGAGCTGTAGAGAAAGCCCTTGAAGAGTTTGGTGGCCGTGTTAGATTGAATATGACTTGTGCCTGTGTTTTGGAACGAAATCGACTGTCGGTTGATGATGCAGCATCTGAGGGAGGAGTTACAGTTCCTGACCGCAACTGTGGGGGACTTGGTGAAATTTCAGTTACTCATTTTGATTCTGTAGAGTTCCTGTCACATCTGAAAAGTCTTGCACGGGTTGTTTCCAAGGTTGGCATACTTGATTTCATTGTTATGCAGAGTCAATTATCTACCTTCTATAGCTCCACAGGGCATTGTCAGCTTCCTATGCATCTACTTCAGGAAGGAAGTGACACCGAAAGCGGTGCAGATGGAACCATGCTGAAGCAAACAGAGGAAATTGTTTTTCATCAAGAAAAGAATGATGATGGTGAAGGTTTTGCAAAGGTTTCTGGTGGGGGTAGTGCCGATAGAACCTCCATCTCAAGTTCAAAGGTCAGGAAGAGAAAGATGAAGAGGAGTTCTGAAATCGAAGAGACTGGCCTCTTAATATCACCAACAGTGAAAGAGGGAAATGCTTCCGGTATAGGATATGGTGATAGTGGAAATGAAGGAGTGACTGAAACAGGCGCAGAGTCTAGAGAGCGGAAAAGGAGTAGGTACTTGTCTTACCCATACGTAAACTTGGGGCAGATAGGATCATCTGCGGAAGGGATTGGTGCAACTATTGATGATGGACCACCTTCAAATGTTAAAAGCACTGGCGATAAGTTCTGGAGGAAATGGTATAGGAGGTTTACTGGTGTGAGTAACACATCTGGTAATTCATATTTGAAAAATACATCTTCTGCTGAGTTGCTTTCTGAATTCTGCTCTGCTGCCATCAACTGCCAGTATCCATTCGAAAATAAAGCATTTGATACAGTTGCTTGGTTTGTATCGAACTTCAGGATATCTGTATTTCATGACGAGCCTATTTGTGAAACCTATAGTAAGAACATGGCTGGTCAGGATGACGATACATATGCTGAATCTTGCCTGTTGGAAAATGTTGACCAGATTCAGGGTAAATCTGTGCCAAAGAAAAGAAATAAAAAGGCTGTTTTGAAGAACGCAGAGGATGAAGACGCTGCCAACACGTCAAGTTTAGTTCAAAGCCCTGCAACTGCTGTACAGGGTATGAATGTAAATGTTGGCAAGAAAAGGGGACGACCAAAGTTAGGGAAATCCAAGACTAAATCTCTTTTTGGGATGTCAGATGTCAATACCAGCATTTCCCCTGATCGGCAAATGGCACAAGATTTTTTAGCTGTCGGCCCTGTGGTGGCCTGTGATAAGCCTAAACGAAAGAAAAGAGAGAAGGCGGAACGCGCAAGTCAAGCGAGTTTGCAGATTAAACAAACAATTGGTATACCTGATTTGAATGGTAACAGTGTTATACCTACCGTTCTGGTTAATAATCAACAGAGCATTGGCCATGCCGCTATTGAAGGTAATGTTGAGCGTGAAAAGAGATTGGGGACTGTAGCTGCTTCAGAGCATTCAAAATCCAATGTGGCTCCTGGCTTGGTAGATGCCAATGGAAACAATTTGAAACCTGGTACATTGGTTGTTGATCTGGGGATTCCTGCTCAGGCTTTTCCATGCCTGGACTCTAACCAGGTTACCAGCCCGCTATCAGCTGAAAGTAAACCTGCTCCGAAGAGAAAGAGAAAGGGGAAGGTAGATCTGGAGATCCCTGTTCAAGCTAACGGCATTCCTGATTTGAATGGAAATGTTGCTGAACGCCTTAAACCTGAGAGGAGGAAGAGGAGGAGAAAAGAAGAAGCTTTAGCAACTGCTCTCCTCTTGACCTTTGCCCCAGGAATCCCGATGCCTTCGAAAGATGATTTAATTTCAACATTTTGTAGGTTTGGACCCTTGAAAGAATCAGAGACACTATTGTTAAAAGAGTCTAGTAGTGCACAGGTTGTGTTCATGGAAGGCGCTGATGCTGGAGAAGCATTTCAGAGTTTAGAGAAAGACAACCCATTTGGCACAAACCTTGTTGGTTACAAGCGCTTTAATCTTCCATCAGTTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

842

Amino Acids

91.57

Weight (kDa)

5.82

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 80 - 164 1.1e-11 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2143
AccB1I GGYRCC 2 cut(s) 83, 384
AccBSI CCGCTC 1 cut(s) 1087
AccI GTMKAC 2 cut(s) 391, 1852
AccII CGCG 1 cut(s) 1812
AciI CCGC 7 cut(s) 595, 804, 1087, 1148, 1805, 1923, 2114
AclWI GGATC 3 cut(s) 290, 1147, 2170
AcoI YGGCCR 2 cut(s) 496, 1915
AcsI RAATTY 4 cut(s) 179, 288, 618, 1307
AcuI CTGAAG 6 cut(s) 27, 422, 764, 845, 1372, 1959
AcyI GRCGYC 1 cut(s) 394
AfaI GTAC 3 cut(s) 1103, 1614, 2044
AfeI AGCGCT 1 cut(s) 2501
AfiI CCNNNNNNNGG 4 cut(s) 1504, 1661, 1725, 1765
AflIII ACRYGT 2 cut(s) 114, 1578
AjiI CACGTC 1 cut(s) 1581
AjnI CCWGG 6 cut(s) 280, 2002, 2038, 2088, 2100, 2302
AloI GAACNNNNNNTCC 2 cut(s) 570, 602
Alw21I GWGCWC 1 cut(s) 2407
Alw26I GTCTC 3 cut(s) 251, 971, 2369
Alw44I GTGCAC 1 cut(s) 2403
AlwI GGATC 3 cut(s) 290, 1147, 2170
AlwNI CAGNNNCTG 2 cut(s) 569, 590
Aor51HI AGCGCT 1 cut(s) 2501
AoxI GGCC 7 cut(s) 204, 278, 496, 982, 1756, 1767, 1915
ApaLI GTGCAC 1 cut(s) 2403
ApeKI GCWGC 4 cut(s) 563, 1319, 1571, 1970
ApoI RAATTY 4 cut(s) 179, 288, 618, 1307
ArsI GACNNNNNNTTYG 2 cut(s) 2456, 2488
Asp700I GAANNNNTTC 2 cut(s) 1018, 2445
AspLEI GCGC 5 cut(s) 415, 1073, 1814, 2429, 2502
AspS9I GGNCC 3 cut(s) 1178, 1757, 2357
AsuHPI GGTGA 5 cut(s) 251, 626, 884, 987, 1049
AsuII TTCGAA 3 cut(s) 159, 1344, 2321
AvaII GGWCC 2 cut(s) 1178, 2357
BaeGI GKGCMC 2 cut(s) 88, 2407
BaeI ACNNNNGTAYC 2 cut(s) 2034, 2067
BalI TGGCCA 1 cut(s) 1917
BanI GGYRCC 2 cut(s) 83, 384
BarI GAAGNNNNNNTAC 2 cut(s) 330, 362
BbsI GAAGAC 1 cut(s) 1572
Bbv12I GWGCWC 1 cut(s) 2407
BbvI GCAGC 4 cut(s) 575, 1306, 1558, 1957
BceAI ACGGC 3 cut(s) 372, 483, 2209
BcgI CGANNNNNNTGC 8 cut(s) 144, 178, 291, 325, 788, 822, 1448, 1482
BciT130I CCWGG 6 cut(s) 282, 2004, 2040, 2090, 2102, 2304
BciVI GTATCC 1 cut(s) 1347
BcoDI GTCTC 3 cut(s) 251, 971, 2369
BfaI CTAG 4 cut(s) 450, 1080, 2397, 2524
BfmI CTRYAG 6 cut(s) 300, 468, 642, 739, 1429, 1965
BfoI RGCGCY 2 cut(s) 2430, 2503
BfuAI ACCTGC 1 cut(s) 2143
BfuI GTATCC 1 cut(s) 1347
BglII AGATCT 2 cut(s) 37, 2167
BisI GCNGC 5 cut(s) 564, 1320, 1572, 1923, 1971
BlsI GCNGC 5 cut(s) 565, 1321, 1573, 1924, 1972
Bme1390I CCNGG 6 cut(s) 282, 2004, 2040, 2090, 2102, 2304
Bme18I GGWCC 2 cut(s) 1178, 2357
BmgBI CACGTC 1 cut(s) 1581
BmgT120I GGNCC 3 cut(s) 1178, 1757, 2357
BmiI GGNNCC 5 cut(s) 85, 386, 817, 2001, 2359
BmrFI CCNGG 6 cut(s) 282, 2004, 2040, 2090, 2102, 2304
BmsI GCATC 9 cut(s) 142, 295, 317, 550, 575, 781, 2005, 2304, 2422
BpiI GAAGAC 1 cut(s) 1572
BpmI CTGGAG 4 cut(s) 218, 1237, 2192, 2457
Bpu10I CCTNAGC 2 cut(s) 54, 2073
Bpu14I TTCGAA 3 cut(s) 159, 1344, 2321
BpuEI CTTGAG 1 cut(s) 910
BsaAI YACGTR 1 cut(s) 1120
BsaHI GRCGYC 1 cut(s) 394
BsaJI CCNNGG 2 cut(s) 687, 2302
BsaWI WCCGGW 1 cut(s) 1022
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 4 cut(s) 1504, 1661, 1725, 1765
Bse1I ACTGG 4 cut(s) 985, 1207, 1246, 1333
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 6 cut(s) 282, 2004, 2040, 2090, 2102, 2304
BseDI CCNNGG 2 cut(s) 687, 2302
BseGI GGATG 5 cut(s) 327, 372, 1459, 1567, 1698
BseLI CCNNNNNNNGG 4 cut(s) 1504, 1661, 1725, 1765
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 4 cut(s) 561, 1284, 2087, 2229
BseNI ACTGG 4 cut(s) 985, 1207, 1246, 1333
BseRI GAGGAG 6 cut(s) 591, 973, 2257, 2266, 2269, 2276
BseSI GKGCMC 2 cut(s) 88, 2407
BseXI GCAGC 4 cut(s) 575, 1306, 1558, 1957
BseYI CCCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 828
Bsh1236I CGCG 1 cut(s) 1812
BshFI GGCC 7 cut(s) 206, 280, 498, 984, 1758, 1769, 1917
BshNI GGYRCC 2 cut(s) 83, 384
BsiHKAI GWGCWC 1 cut(s) 2407
BsiSI CCGG 1 cut(s) 1023
BslFI GGGAC 3 cut(s) 621, 1662, 1975
BslI CCNNNNNNNGG 4 cut(s) 1504, 1661, 1725, 1765
BsmAI GTCTC 3 cut(s) 251, 971, 2369
BsmBI CGTCTC 1 cut(s) 251
BsmFI GGGAC 3 cut(s) 621, 1662, 1975
BsmI GAATGC 3 cut(s) 155, 1981, 2196
BsnI GGCC 7 cut(s) 206, 280, 498, 984, 1758, 1769, 1917
Bsp119I TTCGAA 3 cut(s) 159, 1344, 2321
Bsp1286I GDGCHC 2 cut(s) 88, 2407
Bsp1407I TGTACA 1 cut(s) 1612
Bsp143I GATC 7 cut(s) 37, 295, 1139, 1723, 2056, 2167, 2175
BspACI CCGC 7 cut(s) 595, 804, 1087, 1148, 1805, 1923, 2114
BspANI GGCC 7 cut(s) 206, 280, 498, 984, 1758, 1769, 1917
BspCNI CTCAG 4 cut(s) 562, 1285, 2086, 2230
BspFNI CGCG 1 cut(s) 1812
BspHI TCATGA 2 cut(s) 292, 1405
BspLI GGNNCC 5 cut(s) 85, 386, 817, 2001, 2359
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 2143
BspPI GGATC 3 cut(s) 290, 1147, 2170
BspT104I TTCGAA 3 cut(s) 159, 1344, 2321
BspT107I GGYRCC 2 cut(s) 83, 384
BsrBI CCGCTC 1 cut(s) 1087
BsrDI GCAATG 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 1612
BsrI ACTGG 4 cut(s) 985, 1207, 1246, 1333
BssECI CCNNGG 2 cut(s) 687, 2302
BssMI GATC 7 cut(s) 37, 295, 1139, 1723, 2056, 2167, 2175
BssNAI GTATAC 1 cut(s) 1853
BssNI GRCGYC 1 cut(s) 394
BssT1I CCWWGG 1 cut(s) 687
Bst1107I GTATAC 1 cut(s) 1853
Bst2UI CCWGG 6 cut(s) 282, 2004, 2040, 2090, 2102, 2304
Bst4CI ACNGT 9 cut(s) 79, 549, 586, 602, 1003, 1366, 1874, 1888, 1966
Bst6I CTCTTC 6 cut(s) 480, 938, 950, 969, 2138, 2243
BstACI GRCGYC 1 cut(s) 394
BstAUI TGTACA 1 cut(s) 1612
BstBAI YACGTR 1 cut(s) 1120
BstBI TTCGAA 3 cut(s) 159, 1344, 2321
BstC8I GCNNGC 1 cut(s) 2114
BstDEI CTNAG 6 cut(s) 41, 54, 570, 1293, 2073, 2238
BstEII GGTNACC 1 cut(s) 2104
BstF5I GGATG 5 cut(s) 327, 372, 1459, 1567, 1698
BstFNI CGCG 1 cut(s) 1812
BstH2I RGCGCY 2 cut(s) 2430, 2503
BstHHI GCGC 5 cut(s) 415, 1073, 1814, 2429, 2502
BstKTI GATC 7 cut(s) 40, 298, 1142, 1726, 2059, 2170, 2178
BstMAI GTCTC 3 cut(s) 251, 971, 2369
BstMBI GATC 7 cut(s) 37, 295, 1139, 1723, 2056, 2167, 2175
BstMWI GCNNNNNNNGC 7 cut(s) 393, 412, 760, 769, 1811, 1820, 2441
BstNI CCWGG 6 cut(s) 282, 2004, 2040, 2090, 2102, 2304
BstNSI RCATGY 2 cut(s) 118, 377
BstPI GGTNACC 1 cut(s) 2104
BstSCI CCNGG 6 cut(s) 280, 2002, 2038, 2088, 2100, 2302
BstSFI CTRYAG 6 cut(s) 300, 468, 642, 739, 1429, 1965
BstSLI GKGCMC 2 cut(s) 88, 2407
BstSNI TACGTA 1 cut(s) 1120
BstUI CGCG 1 cut(s) 1812
BstV1I GCAGC 4 cut(s) 575, 1306, 1558, 1957
BstV2I GAAGAC 1 cut(s) 1572
BstX2I RGATCY 3 cut(s) 37, 2167, 2175
BstYI RGATCY 3 cut(s) 37, 2167, 2175
BstZ17I GTATAC 1 cut(s) 1853
BsuI GTATCC 1 cut(s) 1347
BsuRI GGCC 7 cut(s) 206, 280, 498, 984, 1758, 1769, 1917
BtrI CACGTC 1 cut(s) 1581
BtsCI GGATG 5 cut(s) 327, 372, 1459, 1567, 1698
BtsIMutI CAGTG 3 cut(s) 1008, 1200, 1879
BveI ACCTGC 1 cut(s) 2143
Cac8I GCNNGC 1 cut(s) 2114
CaiI CAGNNNCTG 2 cut(s) 569, 590
CciI TCATGA 2 cut(s) 292, 1405
CfoI GCGC 5 cut(s) 415, 1073, 1814, 2429, 2502
Cfr13I GGNCC 3 cut(s) 1178, 1757, 2357
CseI GACGC 2 cut(s) 402, 1577
CsiI ACCWGGT 2 cut(s) 2038, 2100
Csp6I GTAC 3 cut(s) 1102, 1613, 2043
CviQI GTAC 3 cut(s) 1102, 1613, 2043
DdeI CTNAG 6 cut(s) 41, 54, 570, 1293, 2073, 2238
DpnI GATC 7 cut(s) 39, 297, 1141, 1725, 2058, 2169, 2177
DpnII GATC 7 cut(s) 37, 295, 1139, 1723, 2056, 2167, 2175
EaeI YGGCCR 2 cut(s) 496, 1915
Eam1104I CTCTTC 6 cut(s) 480, 938, 950, 969, 2138, 2243
EarI CTCTTC 6 cut(s) 480, 938, 950, 969, 2138, 2243
EciI GGCGGA 1 cut(s) 1820
Eco105I TACGTA 1 cut(s) 1120
Eco130I CCWWGG 1 cut(s) 687
Eco32I GATATC 1 cut(s) 1395
Eco47I GGWCC 2 cut(s) 1178, 2357
Eco47III AGCGCT 1 cut(s) 2501
Eco57I CTGAAG 6 cut(s) 27, 422, 764, 845, 1372, 1959
Eco91I GGTNACC 1 cut(s) 2104
EcoO65I GGTNACC 1 cut(s) 2104
EcoRI GAATTC 1 cut(s) 1307
EcoRII CCWGG 6 cut(s) 280, 2002, 2038, 2088, 2100, 2302
EcoRV GATATC 1 cut(s) 1395
EcoT14I CCWWGG 1 cut(s) 687
EcoT22I ATGCAT 3 cut(s) 157, 310, 774
ErhI CCWWGG 1 cut(s) 687
Esp3I CGTCTC 1 cut(s) 251
FaqI GGGAC 3 cut(s) 621, 1662, 1975
FauI CCCGC 1 cut(s) 2121
FauNDI CATATG 1 cut(s) 1465
FblI GTMKAC 2 cut(s) 391, 1852
Fnu4HI GCNGC 5 cut(s) 564, 1320, 1572, 1923, 1971
FokI GGATG 5 cut(s) 334, 379, 1466, 1574, 1705
Fsp4HI GCNGC 5 cut(s) 564, 1320, 1572, 1923, 1971
FspBI CTAG 4 cut(s) 450, 1080, 2397, 2524
GlaI GCGC 5 cut(s) 414, 1072, 1813, 2428, 2501
GluI GCNGC 5 cut(s) 564, 1320, 1572, 1923, 1971
GsaI CCCAGC 1 cut(s) 320
GsuI CTGGAG 4 cut(s) 218, 1237, 2192, 2457
HaeII RGCGCY 2 cut(s) 2430, 2503
HaeIII GGCC 7 cut(s) 206, 280, 498, 984, 1758, 1769, 1917
HapII CCGG 1 cut(s) 1023
HgaI GACGC 2 cut(s) 402, 1577
HhaI GCGC 5 cut(s) 415, 1073, 1814, 2429, 2502
Hin1I GRCGYC 1 cut(s) 394
Hin6I GCGC 5 cut(s) 413, 1071, 1812, 2427, 2500
HinP1I GCGC 5 cut(s) 413, 1071, 1812, 2427, 2500
HincII GTYRAC 2 cut(s) 392, 1495
HindII GTYRAC 2 cut(s) 392, 1495
HindIII AAGCTT 1 cut(s) 2268
HpaII CCGG 1 cut(s) 1023
HphI GGTGA 5 cut(s) 251, 626, 884, 987, 1049
Hpy166II GTNNAC 8 cut(s) 347, 392, 1123, 1239, 1495, 1853, 2132, 2405
Hpy8I GTNNAC 8 cut(s) 347, 392, 1123, 1239, 1495, 1853, 2132, 2405
Hpy99I CGWCG 2 cut(s) 393, 396
HpyCH4III ACNGT 9 cut(s) 79, 549, 586, 602, 1003, 1366, 1874, 1888, 1966
HpyCH4IV ACGT 2 cut(s) 1119, 1580
HpyF10VI GCNNNNNNNGC 7 cut(s) 393, 412, 760, 769, 1811, 1820, 2441
HpyF3I CTNAG 6 cut(s) 41, 54, 570, 1293, 2073, 2238
HpySE526I ACGT 2 cut(s) 1119, 1580
Hsp92I GRCGYC 1 cut(s) 394
HspAI GCGC 5 cut(s) 413, 1071, 1812, 2427, 2500
Kzo9I GATC 7 cut(s) 37, 295, 1139, 1723, 2056, 2167, 2175
LmnI GCTCC 4 cut(s) 313, 749, 2005, 2143
Lsp1109I GCAGC 4 cut(s) 575, 1306, 1558, 1957
LweI GCATC 9 cut(s) 142, 295, 317, 550, 575, 781, 2005, 2304, 2422
MabI ACCWGGT 2 cut(s) 2038, 2100
MaeI CTAG 4 cut(s) 450, 1080, 2397, 2524
MaeII ACGT 2 cut(s) 1119, 1580
MalI GATC 7 cut(s) 39, 297, 1141, 1725, 2058, 2169, 2177
MbiI CCGCTC 1 cut(s) 1087
MboI GATC 7 cut(s) 37, 295, 1139, 1723, 2056, 2167, 2175
MfeI CAATTG 1 cut(s) 1845
MflI RGATCY 3 cut(s) 37, 2167, 2175
MhlI GDGCHC 2 cut(s) 88, 2407
MlsI TGGCCA 1 cut(s) 1917
MluNI TGGCCA 1 cut(s) 1917
MlyI GAGTC 5 cut(s) 175, 730, 1085, 2087, 2402
MmeI TCCRAC 1 cut(s) 1464
Mox20I TGGCCA 1 cut(s) 1917
Mph1103I ATGCAT 3 cut(s) 157, 310, 774
MroXI GAANNNNTTC 2 cut(s) 1018, 2445
MscI TGGCCA 1 cut(s) 1917
MseI TTAA 8 cut(s) 989, 1194, 1836, 1896, 2232, 2333, 2387, 2505
MslI CAYNNNNRTG 1 cut(s) 713
Msp20I TGGCCA 1 cut(s) 1917
MspA1I CMGCKG 1 cut(s) 2123
MspI CCGG 1 cut(s) 1023
MspR9I CCNGG 6 cut(s) 282, 2004, 2040, 2090, 2102, 2304
MunI CAATTG 1 cut(s) 1845
Mva1269I GAATGC 3 cut(s) 155, 1981, 2196
MvaI CCWGG 6 cut(s) 282, 2004, 2040, 2090, 2102, 2304
MvnI CGCG 1 cut(s) 1812
MwoI GCNNNNNNNGC 7 cut(s) 393, 412, 760, 769, 1811, 1820, 2441
NdeI CATATG 1 cut(s) 1465
NdeII GATC 7 cut(s) 37, 295, 1139, 1723, 2056, 2167, 2175
NlaIV GGNNCC 5 cut(s) 85, 386, 817, 2001, 2359
NmuCI GTSAC 5 cut(s) 73, 239, 654, 791, 1057
NsiI ATGCAT 3 cut(s) 157, 310, 774
NspI RCATGY 2 cut(s) 118, 377
NspV TTCGAA 3 cut(s) 159, 1344, 2321
PagI TCATGA 2 cut(s) 292, 1405
PciI ACATGT 1 cut(s) 114
PctI GAATGC 3 cut(s) 155, 1981, 2196
PdmI GAANNNNTTC 2 cut(s) 1018, 2445
PfeI GAWTC 7 cut(s) 161, 638, 1472, 1501, 2065, 2307, 2369
PkrI GCNGC 5 cut(s) 565, 1321, 1573, 1924, 1972
PleI GAGTC 5 cut(s) 174, 729, 1084, 2087, 2401
PpsI GAGTC 5 cut(s) 174, 729, 1084, 2087, 2401
Ppu21I YACGTR 1 cut(s) 1120
PscI ACATGT 1 cut(s) 114
Psp6I CCWGG 6 cut(s) 280, 2002, 2038, 2088, 2100, 2302
PspEI GGTNACC 1 cut(s) 2104
PspFI CCCAGC 1 cut(s) 316
PspGI CCWGG 6 cut(s) 280, 2002, 2038, 2088, 2100, 2302
PspN4I GGNNCC 5 cut(s) 85, 386, 817, 2001, 2359
PspPI GGNCC 3 cut(s) 1178, 1757, 2357
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 2 cut(s) 569, 590
PsuI RGATCY 3 cut(s) 37, 2167, 2175
PvuII CAGCTG 1 cut(s) 2123
RsaI GTAC 3 cut(s) 1103, 1614, 2044
RsaNI GTAC 3 cut(s) 1102, 1613, 2043
RseI CAYNNNNRTG 1 cut(s) 713
SalI GTCGAC 1 cut(s) 390
SaqAI TTAA 8 cut(s) 989, 1194, 1836, 1896, 2232, 2333, 2387, 2505
SatI GCNGC 5 cut(s) 564, 1320, 1572, 1923, 1971
Sau3AI GATC 7 cut(s) 37, 295, 1139, 1723, 2056, 2167, 2175
Sau96I GGNCC 3 cut(s) 1178, 1757, 2357
SchI GAGTC 5 cut(s) 175, 730, 1085, 2087, 2402
ScrFI CCNGG 6 cut(s) 282, 2004, 2040, 2090, 2102, 2304
SduI GDGCHC 2 cut(s) 88, 2407
SexAI ACCWGGT 2 cut(s) 2038, 2100
SfaNI GCATC 9 cut(s) 142, 295, 317, 550, 575, 781, 2005, 2304, 2422
SfcI CTRYAG 6 cut(s) 300, 468, 642, 739, 1429, 1965
SfuI TTCGAA 3 cut(s) 159, 1344, 2321
SgrDI CGTCGACG 1 cut(s) 390
SinI GGWCC 2 cut(s) 1178, 2357
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 1 cut(s) 925
SmoI CTYRAG 1 cut(s) 925
SnaBI TACGTA 1 cut(s) 1120
SsiI CCGC 7 cut(s) 595, 804, 1087, 1148, 1805, 1923, 2114
SspMI CTAG 4 cut(s) 450, 1080, 2397, 2524
StyD4I CCNGG 6 cut(s) 280, 2002, 2038, 2088, 2100, 2302
StyI CCWWGG 1 cut(s) 687
TaaI ACNGT 9 cut(s) 79, 549, 586, 602, 1003, 1366, 1874, 1888, 1966
TaiI ACGT 2 cut(s) 1122, 1583
TaqI TCGA 8 cut(s) 159, 164, 391, 544, 972, 1344, 1382, 2321
TatI WGTACW 1 cut(s) 1612
TauI GCSGC 1 cut(s) 1925
TfiI GAWTC 7 cut(s) 161, 638, 1472, 1501, 2065, 2307, 2369
Tru1I TTAA 8 cut(s) 989, 1194, 1836, 1896, 2232, 2333, 2387, 2505
Tru9I TTAA 8 cut(s) 989, 1194, 1836, 1896, 2232, 2333, 2387, 2505
TscAI CASTG 3 cut(s) 1008, 1207, 1879
TseFI GTSAC 5 cut(s) 73, 239, 654, 791, 1057
TseI GCWGC 4 cut(s) 563, 1319, 1571, 1970
Tsp45I GTSAC 5 cut(s) 73, 239, 654, 791, 1057
TspRI CASTG 3 cut(s) 1008, 1207, 1879
VneI GTGCAC 1 cut(s) 2403
VpaK11BI GGWCC 2 cut(s) 1178, 2357
XapI RAATTY 4 cut(s) 179, 288, 618, 1307
XbaI TCTAGA 1 cut(s) 1079
XceI RCATGY 2 cut(s) 118, 377
XmiI GTMKAC 2 cut(s) 391, 1852
XmnI GAANNNNTTC 2 cut(s) 1018, 2445
XspI CTAG 4 cut(s) 450, 1080, 2397, 2524
Zsp2I ATGCAT 3 cut(s) 157, 310, 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.