Rh3CG166000

Serine threonine-protein kinase ATM-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Reverse (-)
14145879 .. 14146298
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG166000.1

Sequence Viewer

Length: 420 bp
ATGGTTGAAGAATTTAGAGTTGGGAAGATGGTTGAGGATGTTAGAGTTGAGAAGATGATGGTTGAAGACGGTAGAGTTGACAGGATGGTTAAATATGATGGAGTTAAGGAGAAGGTGGATGAGGCCAAAGCATTCGAATCGAGTATGATGGGTGAAGATGATCAAGATTATGATTATGATTTTTGTGTGGGTGATATTGTGTGGGTTAAAACCAAAATAAACACACGGTGGCCTGCTAGAATTCATGATCCTGCAGATGCATCAAAGTACGGAGGAATTGAAAGTGACCAAGAAGACTCTGCTAGTTGGGTACTTTGGGATGGGTCATGTTGCTTGGTGCCGTCGATACCAACTGATTTCCCCAGTATTTCGAGCAGATTTCAGGGCAGAGCAAGGCTAGAATTTTCATTAAAGCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

15.93

Weight (kDa)

4.58

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 337
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 3 cut(s) 11, 240, 401
AdeI CACNNNGTG 1 cut(s) 228
AfaI GTAC 2 cut(s) 269, 312
AgsI TTSAA 3 cut(s) 8, 65, 281
AjuI GAANNNNNNNTTGG 1 cut(s) 35
AluBI AGCT 1 cut(s) 415
AluI AGCT 1 cut(s) 415
AlwI GGATC 1 cut(s) 242
AoxI GGCC 2 cut(s) 123, 230
ApoI RAATTY 3 cut(s) 11, 240, 401
AsuHPI GGTGA 2 cut(s) 164, 203
AsuII TTCGAA 1 cut(s) 135
BanI GGYRCC 1 cut(s) 337
BbsI GAAGAC 2 cut(s) 72, 300
BccI CCATC 6 cut(s) 22, 52, 79, 92, 142, 314
BceAI ACGGC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 120, 154
BclI TGATCA 1 cut(s) 160
BfaI CTAG 3 cut(s) 237, 303, 398
BfmI CTRYAG 2 cut(s) 252, 416
BmiI GGNNCC 1 cut(s) 339
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 247, 269
BmuI ACTGGG 1 cut(s) 357
BpiI GAAGAC 2 cut(s) 72, 300
Bpu14I TTCGAA 1 cut(s) 135
Bse1I ACTGG 1 cut(s) 363
BseGI GGATG 4 cut(s) 43, 90, 124, 325
BseNI ACTGG 1 cut(s) 363
BshFI GGCC 2 cut(s) 125, 232
BshNI GGYRCC 1 cut(s) 337
BsmI GAATGC 1 cut(s) 131
BsnI GGCC 2 cut(s) 125, 232
Bsp119I TTCGAA 1 cut(s) 135
Bsp143I GATC 2 cut(s) 160, 247
BspANI GGCC 2 cut(s) 125, 232
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 339
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 242
BspT104I TTCGAA 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 337
BsrI ACTGG 1 cut(s) 363
BssMI GATC 2 cut(s) 160, 247
Bst4CI ACNGT 2 cut(s) 71, 228
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 1 cut(s) 234
BstF5I GGATG 4 cut(s) 43, 90, 124, 325
BstKTI GATC 2 cut(s) 163, 250
BstMBI GATC 2 cut(s) 160, 247
BstSFI CTRYAG 2 cut(s) 252, 416
BstV2I GAAGAC 2 cut(s) 72, 300
BsuRI GGCC 2 cut(s) 125, 232
BtsCI GGATG 4 cut(s) 43, 90, 124, 325
Cac8I GCNNGC 1 cut(s) 234
CciI TCATGA 1 cut(s) 244
Csp6I GTAC 2 cut(s) 268, 311
CviAII CATG 2 cut(s) 245, 327
CviJI RGCY 4 cut(s) 125, 232, 397, 415
CviKI_1 RGCY 4 cut(s) 125, 232, 397, 415
CviQI GTAC 2 cut(s) 268, 311
DpnI GATC 2 cut(s) 162, 249
DpnII GATC 2 cut(s) 160, 247
DraIII CACNNNGTG 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 262
FaeI CATG 2 cut(s) 248, 330
FaiI YATR 6 cut(s) 96, 146, 171, 177, 246, 328
FatI CATG 2 cut(s) 244, 326
FbaI TGATCA 1 cut(s) 160
FokI GGATG 4 cut(s) 50, 97, 131, 332
FspBI CTAG 3 cut(s) 237, 303, 398
HaeIII GGCC 2 cut(s) 125, 232
Hin1II CATG 2 cut(s) 248, 330
HincII GTYRAC 1 cut(s) 79
HindII GTYRAC 1 cut(s) 79
HinfI GANTC 2 cut(s) 137, 296
HphI GGTGA 2 cut(s) 164, 203
Hpy166II GTNNAC 1 cut(s) 79
Hpy188III TCNNGA 2 cut(s) 164, 245
Hpy8I GTNNAC 1 cut(s) 79
Hpy99I CGWCG 1 cut(s) 346
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 2 cut(s) 71, 228
HpyCH4V TGCA 2 cut(s) 254, 260
Hsp92II CATG 2 cut(s) 248, 330
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 160, 247
LpnPI CCDG 5 cut(s) 67, 246, 264, 368, 376
LweI GCATC 2 cut(s) 247, 269
MaeI CTAG 3 cut(s) 237, 303, 398
MaeIII GTNAC 1 cut(s) 284
MalI GATC 2 cut(s) 162, 249
MboI GATC 2 cut(s) 160, 247
MboII GAAGA 6 cut(s) 20, 37, 64, 77, 167, 305
MluCI AATT 4 cut(s) 11, 240, 276, 401
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 3 cut(s) 28, 115, 266
Mph1103I ATGCAT 1 cut(s) 262
MseI TTAA 4 cut(s) 90, 105, 207, 410
Mva1269I GAATGC 1 cut(s) 131
NdeII GATC 2 cut(s) 160, 247
NlaIII CATG 2 cut(s) 248, 330
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 284
NsiI ATGCAT 1 cut(s) 262
NspV TTCGAA 1 cut(s) 135
PagI TCATGA 1 cut(s) 244
PctI GAATGC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 137
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PspN4I GGNNCC 1 cut(s) 339
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 2 cut(s) 269, 312
RsaNI GTAC 2 cut(s) 268, 311
SaqAI TTAA 4 cut(s) 90, 105, 207, 410
Sau3AI GATC 2 cut(s) 160, 247
SchI GAGTC 1 cut(s) 290
SetI ASST 2 cut(s) 117, 417
SfaNI GCATC 2 cut(s) 247, 269
SfcI CTRYAG 2 cut(s) 252, 416
SfuI TTCGAA 1 cut(s) 135
Sse9I AATT 4 cut(s) 11, 240, 276, 401
SspMI CTAG 3 cut(s) 237, 303, 398
TaaI ACNGT 2 cut(s) 71, 228
TaqI TCGA 4 cut(s) 135, 140, 344, 371
TasI AATT 4 cut(s) 11, 240, 276, 401
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 4 cut(s) 90, 105, 207, 410
Tru9I TTAA 4 cut(s) 90, 105, 207, 410
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 233, 396
TspGWI ACGGA 1 cut(s) 285
XapI RAATTY 3 cut(s) 11, 240, 401
XspI CTAG 3 cut(s) 237, 303, 398
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.