RchiOBHm_Chr7g0223481

Serine threonine-protein kinase ATM-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001132
Physical Location & Seq
Forward (+)
45241695 .. 45245175
3481 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20009

Sequence Viewer

Length: 2640 bp
ATGATGGTTGAAGATGTTGGAGTTAAGGAGAAGGTGGATGAGGCCAAAGCATTTGAATCGAGTATGATGGGTGAAGATGATCAAGATTATGATTTTTGTGTGGGTGATATTGTGTGGGTTAAAACCAAAATAAACACATGGTGGCCTGCTAGAATTCATGATCCTGCAGATGCATCAAAGTACGGAGGAATTGAAAGTGACCAAGAAGGCTGTCTGCTAGTTGGCTACTTTGGGATGGGTCATGTTGCCTGGTGCCGTCGATACCAACTGAAGCCTTTCCCCAAGTATTTCGAGCAGATTTCAGGGCAGAGCAAGGCTAGAATTTTCGTTAAAGCTGTAGAGAAAGCTCTTGAAGAGTTTGGTCGCCGTGTCGAATTGAATATGACTTGTGCCTGTGTTTTGAAAGCAAACCGACTTTCAGTTGATGATGCTGCATCTAAGGAAGGAGTTTTGGTTCCTGACCGCAGCTCCAGTGAACTCGGTGAATTTTCAGCTACGCATTTTGATTCTGCAAAGTTCCTTGCACATCTGAAAAATCTTGCACAGGTTGTTTCCAAAGTTGGCGTACTTGATTATACTGTTACACGTAGTCGATTATCAGCCTTCTGTACCTCCACAGGGCACAGGCAACTGCCTATGGATCTACTTCAGGAAGGAAATGATGCTGAAAGTGGTGCCGACGGGACCTTGCTGAAGCAAGCAGAGGAAAATGTTTTACATCAAGAGAAGAATGACGAGAATGAATCTTTTGCAAAGGTTTTTGGTGGGGGCAGTGCCGATAAAACTTCCATCTCAAGTTTAAAGTCCAGGAAGAGAAAGATGAAGAGGGATTCTGAAATTGAAGAGACTAGCCTCATGATATCCCCAACAGTGAAAGAGAGCAAGGCTTCTAGTGTAGTAAATGGTGATGGCGGGAATGAAGGAATGATTGAAATAGGCGCCGAGTCTAGAGAGAGAAAAAAGAGTAGGTACTTGTCTTACCCATACATAAATGTGGGGCAGAAAGGATTGTCTGCGGAAGGAATGGCGGCAACAATTGATGGTGGACCCCCTTCAAATTTTAAAAGCACTGGTGAGAAGTTCTGGAGGAAATGGTATAGGAGGTTTACTGGTGTGAGTAACATATCTGGTGATTCATATTTGAAAAATGCATCTTCTGCTGAGTTGCTTTCTGAATTCTGCTCTGCAGCCATCGACTGCCAGTATCCGATTGAAAATAAAGCATTTCATTCAGTTGCTTGGTTCATCTCTAACTTTAGGATATCAGTATTTCATGACGAGCCTTTTTGTGAAACCTACAGTAAGAACATGGCTGGTCAGGATGAGGATAGAGATGCTGAGACTTGCCTGTTGGAAAATGGTGGCCAGAATGAGGCTAAATCTGAGCCAAAGAAAAGAAATAAAAAGGCAGTTTCGAAGCATCTAGAGGGTGAAGATGCTGCCAACACGTCAAGCTTAGTTCAAAGCCCTGCAACTGCTGTAGAGGGTATGAATGGAAACCTTGGCAAGAAAAGGGGACGACCAAAGTTAGGGAGATCCAAGACTAAATCCCTTTCTGGGATGTCAGATGTCAATATAAGCATTGCCCCTGATGGCCAAATGGTACAAGATTCTTCAGCTGTCGGCCCTCTCATGCCCTGTGATAAGCCTAAGCAAAAGAAAAGAGAGAAGGTGGAAGGAGCAAGTCAAGCAAGTTTGCAGACTAAACAAACAATTGGTATACCTGATTTGAATGGTAACAGTGTTCTACCTACCGTTCTGGTTAATAAACAACAGACTATTGGCCATGCTGTTTCTGAAGGTAACATTCAGCTAGAAAAGAGATTGGGGACGGAAACTGCTTCAGAGCACTCAATATCCAATATGGCTCCTGGCTTAGTTGATGCCAATGGAAACAATTTGAAACCTGGTACATTGGTTGTAGATCTGGGGATTCGTGCTAAGGCTTTGGCATGCCTGGACTCTAAACAGGTGACCAGCCTGCTCACAGATGAGAGTAAACCTGCCCCGAAAAAGAGAAAGAGAAAGGATAAAGTAGATCCGGGGTTTCCTGTTCAAGCTGACGGTATTCCAGATTTGAATGGAAATAGTGCTGAATGCCTTACACCTTCAAGTAAACCTGAGCGGAAGAGGAGGAGGAGAAAAGGAGAAGGTCTAGCAACCGCTCTCCTCTTGACATTTGTGTCCGGAATTCCACTGCCTTCAAAAGATGATTTAATCTCAACATTTTGTAGGTTTGGACCCTTGAAAGAATCGGAGACTCAGTTATTAAAAGATTCTAGTAGTGCACAGGTTGTATTCATGGAAAGTGCTGATGCTGGAGAGGCATTTCAGAGTTTAGAGAAGAACAACCCTTTTGGCACAAACCTTGTTGCTTACAAGCGCTTTAATCTTCCATCAGTGTCCAAGGTTTTAGCCACAAGCCTATCCTCTCCGCCCACTAAGAGATTGGTGACTCCTGTACAATCGCCTGCCAAGGGACCTTGCCTTGACACCATAAGGCAGAATCTTCAGATGATGACATCAATGCTGGAGACTTCAGGTGATACTCTTTCTCCAGAGATGAGAGCCAAACTGGAGTGTGAAATAAAAGGCCTCCTACAGAAGGTGAGCTCCACAGCTGGTTCGTCCTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PWWP

Protein Analysis

879

Amino Acids

95.61

Weight (kDa)

8.26

Isoelectric Point (pI)

46.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PWWP PF00855 35 - 120 3.3e-13 PWWP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2182
Acc36I ACCTGC 1 cut(s) 2011
AccB1I GGYRCC 3 cut(s) 252, 674, 938
AccBSI CCGCTC 2 cut(s) 2125, 2165
AccI GTMKAC 1 cut(s) 1720
AccIII TCCGGA 1 cut(s) 2186
AciI CCGC 7 cut(s) 463, 912, 1016, 1028, 2125, 2163, 2435
AclWI GGATC 4 cut(s) 155, 648, 1530, 2033
AcoI YGGCCR 3 cut(s) 1363, 1594, 1783
AcsI RAATTY 6 cut(s) 153, 321, 485, 1057, 1175, 2190
AcuI CTGAAG 8 cut(s) 290, 632, 713, 1599, 1818, 1827, 2495, 2523
AcyI GRCGYC 1 cut(s) 939
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 7 cut(s) 182, 567, 610, 971, 1605, 1912, 2463
AfeI AGCGCT 1 cut(s) 2384
AfiI CCNNNNNNNGG 6 cut(s) 618, 1372, 1529, 1557, 2477, 2605
AflIII ACRYGT 2 cut(s) 584, 1446
AjiI CACGTC 1 cut(s) 1449
AjnI CCWGG 5 cut(s) 248, 806, 1870, 1906, 1956
AloI GAACNNNNNNTCC 2 cut(s) 438, 470
Alw21I GWGCWC 3 cut(s) 1851, 2290, 2615
Alw26I GTCTC 4 cut(s) 839, 1334, 2252, 2528
Alw44I GTGCAC 1 cut(s) 2286
AlwI GGATC 4 cut(s) 155, 648, 1530, 2033
Aor13HI TCCGGA 1 cut(s) 2186
Aor51HI AGCGCT 1 cut(s) 2384
AoxI GGCC 7 cut(s) 42, 143, 1363, 1594, 1624, 1783, 2593
ApaLI GTGCAC 1 cut(s) 2286
ApeKI GCWGC 4 cut(s) 431, 465, 1187, 1439
ApoI RAATTY 6 cut(s) 153, 321, 485, 1057, 1175, 2190
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 2 cut(s) 941, 2385
AspS9I GGNCC 5 cut(s) 684, 1046, 1625, 2240, 2480
AsuC2I CCSGG 1 cut(s) 2043
AsuII TTCGAA 1 cut(s) 1415
AvaII GGWCC 4 cut(s) 684, 1046, 2240, 2480
BaeGI GKGCMC 2 cut(s) 624, 2290
BaeI ACNNNNGTAYC 2 cut(s) 1902, 1935
BalI TGGCCA 3 cut(s) 1365, 1596, 1785
BanI GGYRCC 3 cut(s) 252, 674, 938
BanII GRGCYC 1 cut(s) 2615
Bbv12I GWGCWC 3 cut(s) 1851, 2290, 2615
BbvI GCAGC 4 cut(s) 418, 477, 1199, 1426
BccI CCATC 8 cut(s) 61, 229, 797, 902, 1034, 1199, 1586, 2404
BceAI ACGGC 2 cut(s) 240, 351
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BciT130I CCWGG 5 cut(s) 250, 808, 1872, 1908, 1958
BciVI GTATCC 1 cut(s) 1215
BclI TGATCA 1 cut(s) 79
BcnI CCSGG 1 cut(s) 2043
BcoDI GTCTC 4 cut(s) 839, 1334, 2252, 2528
BfmI CTRYAG 6 cut(s) 165, 336, 1185, 1297, 1479, 2600
BfoI RGCGCY 2 cut(s) 942, 2386
BfuAI ACCTGC 1 cut(s) 2011
BfuI GTATCC 1 cut(s) 1215
BglII AGATCT 1 cut(s) 1924
BisI GCNGC 5 cut(s) 432, 466, 1029, 1188, 1440
BlsI GCNGC 5 cut(s) 433, 467, 1030, 1189, 1441
Bme1390I CCNGG 6 cut(s) 250, 808, 1872, 1908, 1958, 2043
Bme18I GGWCC 4 cut(s) 684, 1046, 2240, 2480
BmgBI CACGTC 1 cut(s) 1449
BmgT120I GGNCC 5 cut(s) 684, 1046, 1625, 2240, 2480
BmiI GGNNCC 9 cut(s) 254, 456, 676, 685, 940, 1048, 1869, 2242, 2481
BmrFI CCNGG 6 cut(s) 250, 808, 1872, 1908, 1958, 2043
BpmI CTGGAG 6 cut(s) 454, 1105, 2340, 2541, 2552, 2597
Bpu10I CCTNAGC 3 cut(s) 1650, 1941, 2121
Bpu14I TTCGAA 1 cut(s) 1415
BpuEI CTTGAG 1 cut(s) 778
BpuMI CCSGG 1 cut(s) 2043
BsaAI YACGTR 1 cut(s) 587
BsaHI GRCGYC 1 cut(s) 939
BsaJI CCNNGG 4 cut(s) 1501, 2042, 2406, 2475
BsaWI WCCGGW 1 cut(s) 2186
BsaXI ACNNNNNCTCC 8 cut(s) 438, 452, 468, 482, 2249, 2279, 2539, 2569
Bsc4I CCNNNNNNNGG 6 cut(s) 618, 1372, 1529, 1557, 2477, 2605
Bse1I ACTGG 5 cut(s) 471, 1075, 1114, 1201, 2580
Bse3DI GCAATG 1 cut(s) 1581
BseAI TCCGGA 1 cut(s) 2186
BseBI CCWGG 5 cut(s) 250, 808, 1872, 1908, 1958
BseDI CCNNGG 4 cut(s) 1501, 2042, 2406, 2475
BseGI GGATG 4 cut(s) 43, 240, 1327, 1566
BseLI CCNNNNNNNGG 6 cut(s) 618, 1372, 1529, 1557, 2477, 2605
BseMI GCAATG 1 cut(s) 1581
BseMII CTCAG 5 cut(s) 1152, 1329, 1374, 2112, 2276
BseNI ACTGG 5 cut(s) 471, 1075, 1114, 1201, 2580
BseRI GAGGAG 4 cut(s) 2146, 2149, 2152, 2159
BseSI GKGCMC 2 cut(s) 624, 2290
BseXI GCAGC 4 cut(s) 418, 477, 1199, 1426
BshFI GGCC 7 cut(s) 44, 145, 1365, 1596, 1626, 1785, 2595
BshNI GGYRCC 3 cut(s) 252, 674, 938
BsiHKAI GWGCWC 3 cut(s) 1851, 2290, 2615
BsiSI CCGG 2 cut(s) 2042, 2187
BslFI GGGAC 4 cut(s) 697, 1530, 1843, 2493
BslI CCNNNNNNNGG 6 cut(s) 618, 1372, 1529, 1557, 2477, 2605
BsmAI GTCTC 4 cut(s) 839, 1334, 2252, 2528
BsmFI GGGAC 4 cut(s) 697, 1530, 1843, 2493
BsmI GAATGC 1 cut(s) 2102
BsnI GGCC 7 cut(s) 44, 145, 1365, 1596, 1626, 1785, 2595
Bsp119I TTCGAA 1 cut(s) 1415
Bsp1286I GDGCHC 4 cut(s) 624, 1851, 2290, 2615
Bsp13I TCCGGA 1 cut(s) 2186
Bsp1407I TGTACA 1 cut(s) 2461
Bsp143I GATC 6 cut(s) 79, 160, 640, 1535, 1924, 2038
BspACI CCGC 7 cut(s) 463, 912, 1016, 1028, 2125, 2163, 2435
BspANI GGCC 7 cut(s) 44, 145, 1365, 1596, 1626, 1785, 2595
BspCNI CTCAG 5 cut(s) 1153, 1330, 1375, 2113, 2275
BspEI TCCGGA 1 cut(s) 2186
BspHI TCATGA 3 cut(s) 157, 855, 1273
BspLI GGNNCC 9 cut(s) 254, 456, 676, 685, 940, 1048, 1869, 2242, 2481
BspMAI CTGCAG 2 cut(s) 169, 1189
BspMI ACCTGC 1 cut(s) 2011
BspPI GGATC 4 cut(s) 155, 648, 1530, 2033
BspT104I TTCGAA 1 cut(s) 1415
BspT107I GGYRCC 3 cut(s) 252, 674, 938
BsrBI CCGCTC 2 cut(s) 2125, 2165
BsrDI GCAATG 1 cut(s) 1581
BsrGI TGTACA 1 cut(s) 2461
BsrI ACTGG 5 cut(s) 471, 1075, 1114, 1201, 2580
BssECI CCNNGG 4 cut(s) 1501, 2042, 2406, 2475
BssMI GATC 6 cut(s) 79, 160, 640, 1535, 1924, 2038
BssNAI GTATAC 1 cut(s) 1721
BssNI GRCGYC 1 cut(s) 939
BssT1I CCWWGG 3 cut(s) 1501, 2406, 2475
Bst1107I GTATAC 1 cut(s) 1721
Bst2UI CCWGG 5 cut(s) 250, 808, 1872, 1908, 1958
Bst4CI ACNGT 6 cut(s) 580, 871, 1301, 1742, 1756, 2066
Bst6I CTCTTC 5 cut(s) 348, 806, 818, 837, 2123
BstACI GRCGYC 1 cut(s) 939
BstAPI GCANNNNNTGC 1 cut(s) 1157
BstAUI TGTACA 1 cut(s) 2461
BstBAI YACGTR 1 cut(s) 587
BstBI TTCGAA 1 cut(s) 1415
BstC8I GCNNGC 5 cut(s) 147, 699, 1954, 1982, 2472
BstEII GGTNACC 1 cut(s) 1972
BstENI CCTNNNNNAGG 1 cut(s) 2603
BstF5I GGATG 4 cut(s) 43, 240, 1327, 1566
BstH2I RGCGCY 2 cut(s) 942, 2386
BstHHI GCGC 2 cut(s) 941, 2385
BstKTI GATC 6 cut(s) 82, 163, 643, 1538, 1927, 2041
BstMAI GTCTC 4 cut(s) 839, 1334, 2252, 2528
BstMBI GATC 6 cut(s) 79, 160, 640, 1535, 1924, 2038
BstMWI GCNNNNNNNGC 3 cut(s) 1157, 1688, 2324
BstNI CCWGG 5 cut(s) 250, 808, 1872, 1908, 1958
BstNSI RCATGY 1 cut(s) 1956
BstPI GGTNACC 1 cut(s) 1972
BstSCI CCNGG 6 cut(s) 248, 806, 1870, 1906, 1956, 2041
BstSFI CTRYAG 6 cut(s) 165, 336, 1185, 1297, 1479, 2600
BstSLI GKGCMC 2 cut(s) 624, 2290
BstV1I GCAGC 4 cut(s) 418, 477, 1199, 1426
BstX2I RGATCY 4 cut(s) 640, 1535, 1924, 2038
BstYI RGATCY 4 cut(s) 640, 1535, 1924, 2038
BstZ17I GTATAC 1 cut(s) 1721
BsuI GTATCC 1 cut(s) 1215
BsuRI GGCC 7 cut(s) 44, 145, 1365, 1596, 1626, 1785, 2595
BtrI CACGTC 1 cut(s) 1449
BtsCI GGATG 4 cut(s) 43, 240, 1327, 1566
BtsI GCAGTG 2 cut(s) 778, 2195
BtsIMutI CAGTG 7 cut(s) 478, 778, 876, 1068, 1747, 2195, 2406
BveI ACCTGC 1 cut(s) 2011
Cac8I GCNNGC 5 cut(s) 147, 699, 1954, 1982, 2472
CciI TCATGA 3 cut(s) 157, 855, 1273
CfoI GCGC 2 cut(s) 941, 2385
Cfr13I GGNCC 5 cut(s) 684, 1046, 1625, 2240, 2480
CsiI ACCWGGT 1 cut(s) 1906
Csp6I GTAC 7 cut(s) 181, 566, 609, 970, 1604, 1911, 2462
CviQI GTAC 7 cut(s) 181, 566, 609, 970, 1604, 1911, 2462
DinI GGCGCC 1 cut(s) 940
DpnI GATC 6 cut(s) 81, 162, 642, 1537, 1926, 2040
DpnII GATC 6 cut(s) 79, 160, 640, 1535, 1924, 2038
DraI TTTAAA 2 cut(s) 801, 1063
DraIII CACNNNGTG 1 cut(s) 141
DrdI GACNNNNNNGTC 1 cut(s) 2182
DseDI GACNNNNNNGTC 1 cut(s) 2182
EaeI YGGCCR 3 cut(s) 1363, 1594, 1783
Eam1104I CTCTTC 5 cut(s) 348, 806, 818, 837, 2123
EarI CTCTTC 5 cut(s) 348, 806, 818, 837, 2123
EciI GGCGGA 1 cut(s) 2424
Ecl136II GAGCTC 1 cut(s) 2613
Eco130I CCWWGG 3 cut(s) 1501, 2406, 2475
Eco147I AGGCCT 1 cut(s) 2595
Eco24I GRGCYC 1 cut(s) 2615
Eco32I GATATC 2 cut(s) 861, 1263
Eco47I GGWCC 4 cut(s) 684, 1046, 2240, 2480
Eco47III AGCGCT 1 cut(s) 2384
Eco53kI GAGCTC 1 cut(s) 2613
Eco57I CTGAAG 8 cut(s) 290, 632, 713, 1599, 1818, 1827, 2495, 2523
Eco91I GGTNACC 1 cut(s) 1972
EcoICRI GAGCTC 1 cut(s) 2613
EcoNI CCTNNNNNAGG 1 cut(s) 2603
EcoO109I RGGNCCY 2 cut(s) 684, 2480
EcoO65I GGTNACC 1 cut(s) 1972
EcoRI GAATTC 3 cut(s) 153, 1175, 2190
EcoRII CCWGG 5 cut(s) 248, 806, 1870, 1906, 1956
EcoRV GATATC 2 cut(s) 861, 1263
EcoT14I CCWWGG 3 cut(s) 1501, 2406, 2475
EcoT22I ATGCAT 2 cut(s) 175, 1153
EcoT38I GRGCYC 1 cut(s) 2615
EgeI GGCGCC 1 cut(s) 940
EheI GGCGCC 1 cut(s) 940
ErhI CCWWGG 3 cut(s) 1501, 2406, 2475
FaqI GGGAC 4 cut(s) 697, 1530, 1843, 2493
FauI CCCGC 1 cut(s) 905
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 1 cut(s) 1720
Fnu4HI GCNGC 5 cut(s) 432, 466, 1029, 1188, 1440
FokI GGATG 4 cut(s) 50, 247, 1334, 1573
FriOI GRGCYC 1 cut(s) 2615
Fsp4HI GCNGC 5 cut(s) 432, 466, 1029, 1188, 1440
GlaI GCGC 2 cut(s) 940, 2384
GluI GCNGC 5 cut(s) 432, 466, 1029, 1188, 1440
GsuI CTGGAG 6 cut(s) 454, 1105, 2340, 2541, 2552, 2597
HaeII RGCGCY 2 cut(s) 942, 2386
HaeIII GGCC 7 cut(s) 44, 145, 1365, 1596, 1626, 1785, 2595
HapII CCGG 2 cut(s) 2042, 2187
HhaI GCGC 2 cut(s) 941, 2385
Hin1I GRCGYC 1 cut(s) 939
Hin6I GCGC 2 cut(s) 939, 2383
HinP1I GCGC 2 cut(s) 939, 2383
HindIII AAGCTT 1 cut(s) 1453
HpaII CCGG 2 cut(s) 2042, 2187
Hpy166II GTNNAC 7 cut(s) 476, 1046, 1107, 1721, 2000, 2117, 2288
Hpy8I GTNNAC 7 cut(s) 476, 1046, 1107, 1721, 2000, 2117, 2288
Hpy99I CGWCG 2 cut(s) 261, 683
HpyCH4III ACNGT 6 cut(s) 580, 871, 1301, 1742, 1756, 2066
HpyCH4IV ACGT 2 cut(s) 586, 1448
HpyF10VI GCNNNNNNNGC 3 cut(s) 1157, 1688, 2324
HpySE526I ACGT 2 cut(s) 586, 1448
Hsp92I GRCGYC 1 cut(s) 939
HspAI GCGC 2 cut(s) 939, 2383
KasI GGCGCC 1 cut(s) 938
Kpn2I TCCGGA 1 cut(s) 2186
Ksp22I TGATCA 1 cut(s) 79
Kzo9I GATC 6 cut(s) 79, 160, 640, 1535, 1924, 2038
LmnI GCTCC 4 cut(s) 473, 1679, 1873, 2618
Lsp1109I GCAGC 4 cut(s) 418, 477, 1199, 1426
MabI ACCWGGT 1 cut(s) 1906
MaeII ACGT 2 cut(s) 586, 1448
MaeIII GTNAC 7 cut(s) 197, 580, 1118, 1736, 1802, 1972, 2452
MalI GATC 6 cut(s) 81, 162, 642, 1537, 1926, 2040
MbiI CCGCTC 2 cut(s) 2125, 2165
MboI GATC 6 cut(s) 79, 160, 640, 1535, 1924, 2038
MfeI CAATTG 2 cut(s) 1035, 1713
MflI RGATCY 4 cut(s) 640, 1535, 1924, 2038
MhlI GDGCHC 4 cut(s) 624, 1851, 2290, 2615
MlsI TGGCCA 3 cut(s) 1365, 1596, 1785
MluNI TGGCCA 3 cut(s) 1365, 1596, 1785
Mly113I GGCGCC 1 cut(s) 939
MlyI GAGTC 4 cut(s) 953, 1955, 2254, 2449
MmeI TCCRAC 1 cut(s) 1332
Mox20I TGGCCA 3 cut(s) 1365, 1596, 1785
Mph1103I ATGCAT 2 cut(s) 175, 1153
MroI TCCGGA 1 cut(s) 2186
MroXI GAANNNNTTC 1 cut(s) 275
MscI TGGCCA 3 cut(s) 1365, 1596, 1785
MslI CAYNNNNRTG 1 cut(s) 992
Msp20I TGGCCA 3 cut(s) 1365, 1596, 1785
MspA1I CMGCKG 2 cut(s) 1619, 2621
MspI CCGG 2 cut(s) 2042, 2187
MspR9I CCNGG 6 cut(s) 250, 808, 1872, 1908, 1958, 2043
MunI CAATTG 2 cut(s) 1035, 1713
Mva1269I GAATGC 1 cut(s) 2102
MvaI CCWGG 5 cut(s) 250, 808, 1872, 1908, 1958
MwoI GCNNNNNNNGC 3 cut(s) 1157, 1688, 2324
NarI GGCGCC 1 cut(s) 939
NciI CCSGG 1 cut(s) 2043
NdeII GATC 6 cut(s) 79, 160, 640, 1535, 1924, 2038
NlaIV GGNNCC 9 cut(s) 254, 456, 676, 685, 940, 1048, 1869, 2242, 2481
NmeAIII GCCGAG 1 cut(s) 967
NmuCI GTSAC 3 cut(s) 197, 1972, 2452
NsiI ATGCAT 2 cut(s) 175, 1153
NspI RCATGY 1 cut(s) 1956
NspV TTCGAA 1 cut(s) 1415
PaeI GCATGC 1 cut(s) 1956
PagI TCATGA 3 cut(s) 157, 855, 1273
PceI AGGCCT 1 cut(s) 2595
PctI GAATGC 1 cut(s) 2102
PdmI GAANNNNTTC 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 806
PkrI GCNGC 5 cut(s) 433, 467, 1030, 1189, 1441
PleI GAGTC 4 cut(s) 952, 1955, 2254, 2449
PluTI GGCGCC 1 cut(s) 942
PpsI GAGTC 4 cut(s) 952, 1955, 2254, 2449
Ppu21I YACGTR 1 cut(s) 587
PpuMI RGGWCCY 2 cut(s) 684, 2480
Psp124BI GAGCTC 1 cut(s) 2615
Psp5II RGGWCCY 2 cut(s) 684, 2480
Psp6I CCWGG 5 cut(s) 248, 806, 1870, 1906, 1956
PspEI GGTNACC 1 cut(s) 1972
PspGI CCWGG 5 cut(s) 248, 806, 1870, 1906, 1956
PspN4I GGNNCC 9 cut(s) 254, 456, 676, 685, 940, 1048, 1869, 2242, 2481
PspPI GGNCC 5 cut(s) 684, 1046, 1625, 2240, 2480
PspPPI RGGWCCY 2 cut(s) 684, 2480
PstI CTGCAG 2 cut(s) 169, 1189
PsuI RGATCY 4 cut(s) 640, 1535, 1924, 2038
PvuII CAGCTG 2 cut(s) 1619, 2621
RsaI GTAC 7 cut(s) 182, 567, 610, 971, 1605, 1912, 2463
RsaNI GTAC 7 cut(s) 181, 566, 609, 970, 1604, 1911, 2462
RseI CAYNNNNRTG 1 cut(s) 992
SacI GAGCTC 1 cut(s) 2615
SatI GCNGC 5 cut(s) 432, 466, 1029, 1188, 1440
Sau3AI GATC 6 cut(s) 79, 160, 640, 1535, 1924, 2038
Sau96I GGNCC 5 cut(s) 684, 1046, 1625, 2240, 2480
SchI GAGTC 4 cut(s) 953, 1955, 2254, 2449
ScrFI CCNGG 6 cut(s) 250, 808, 1872, 1908, 1958, 2043
SduI GDGCHC 4 cut(s) 624, 1851, 2290, 2615
SexAI ACCWGGT 1 cut(s) 1906
SfcI CTRYAG 6 cut(s) 165, 336, 1185, 1297, 1479, 2600
SfoI GGCGCC 1 cut(s) 940
SfuI TTCGAA 1 cut(s) 1415
SinI GGWCC 4 cut(s) 684, 1046, 2240, 2480
SmiMI CAYNNNNRTG 1 cut(s) 992
SmlI CTYRAG 1 cut(s) 793
SmoI CTYRAG 1 cut(s) 793
SphI GCATGC 1 cut(s) 1956
SseBI AGGCCT 1 cut(s) 2595
SsiI CCGC 7 cut(s) 463, 912, 1016, 1028, 2125, 2163, 2435
SspDI GGCGCC 1 cut(s) 938
SstI GAGCTC 1 cut(s) 2615
StuI AGGCCT 1 cut(s) 2595
StyD4I CCNGG 6 cut(s) 248, 806, 1870, 1906, 1956, 2041
StyI CCWWGG 3 cut(s) 1501, 2406, 2475
TaaI ACNGT 6 cut(s) 580, 871, 1301, 1742, 1756, 2066
TaiI ACGT 2 cut(s) 589, 1451
TaqI TCGA 7 cut(s) 59, 259, 291, 372, 592, 1194, 1415
TatI WGTACW 1 cut(s) 2461
TauI GCSGC 1 cut(s) 1031
TscAI CASTG 7 cut(s) 478, 778, 876, 1075, 1747, 2202, 2406
TseFI GTSAC 3 cut(s) 197, 1972, 2452
TseI GCWGC 4 cut(s) 431, 465, 1187, 1439
Tsp45I GTSAC 3 cut(s) 197, 1972, 2452
TspGWI ACGGA 2 cut(s) 198, 1847
TspRI CASTG 7 cut(s) 478, 778, 876, 1075, 1747, 2202, 2406
VneI GTGCAC 1 cut(s) 2286
VpaK11BI GGWCC 4 cut(s) 684, 1046, 2240, 2480
XagI CCTNNNNNAGG 1 cut(s) 2603
XapI RAATTY 6 cut(s) 153, 321, 485, 1057, 1175, 2190
XbaI TCTAGA 2 cut(s) 947, 1423
XceI RCATGY 1 cut(s) 1956
XcmI CCANNNNNNNNNTGG 1 cut(s) 2446
XmiI GTMKAC 1 cut(s) 1720
XmnI GAANNNNTTC 1 cut(s) 275
Zsp2I ATGCAT 2 cut(s) 175, 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.