Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001132

Physical Location & Seq

Genomic Coordinates Forward (+)

59558185 .. 59559361

Gene Structure 1177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG423300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAAGAGGGATTCTGAAATTGAAGAGACTAGCCTAGTGATATCCCCGACAGTGAAAGAGAGCAATGCTTCCAGTCTAGGAAATGGTGATGGCGGAAATGAAGGAATGATTGAAATAGGCGCTGAGTCGAGAGAGAGGAAGAAGAGTAGGTACTTGTCTTACCCATACGTAAACTGGGGGCAGAAAGGATTGTCTGCGGAAGGAATGGAAACAACTACTGATGGTGGACCACCTTCAAATTTTAAAAGCACCGGTGAGAAATTCTGGAGGAAATGGCATAGGAGGTCTACTGGTGTGAATAACATATCTGGTAATTCAAATGTGAAAAATACATCTTCTGCTGAGTTGCTTTCTGAATTCTGCTCTGCAGCCATCAGCTGCCAGTATCTGATTGAAAAAATAAAGCATTTGATTCAGTTGCTTGGTTCATCTCTAACTTCAGGATATCAGTATTTCATGACGAGCCCATTTGTGAAACCTACAGTAAGAACATGGCTAGTCAGGATGAGGATAAAGATGTCGAACCTTGCCTGTTGGAAAATGGTGGTCAGAATGAGGCTAAATCTGAGGTTGGAATTGCAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

195

Amino Acids

22.0

Weight (kDa)

9.68

Isoelectric Point (pI)

50.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48187
fragaria_vesca	FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880
malus_domestica	MD06G1173400.v1.1 MD14G1179900.v1.1
prunus_persica	Prupe.5G172900_v2.0.a1
pyrus_communis	pycom06g15450 pycom06g15460 pycom14g14970
rosa_chinensis	RchiOBHm_Chr3g0469511 RchiOBHm_Chr7g0223481 RchiOBHm_Chr7g0223491 RchiOBHm_Chr7g0232001
rosa_laevigata	RLG00000001961 RLG00000001963
rosa_multiflora	Rmu_co8352987.1_g000001 Rmu_sc0001825.1_g000011 Rmu_sc0002224.1_g000002 Rmu_sc0007408.1_g000001 Rmu_sc0015894.1_g000001 Rmu_sc0023342.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023900 Rroxscaffold_3G00235670 Rroxscaffold_3G00235680 Rroxscaffold_4G00279490
rosa_rugosa	Rorug07G0217400 Rorug07G0217500 Rorug07G0217500 Rorug07G0217600
rosa_samantha	Rh1AG475500 Rh2BG423300 Rh3AG151300 Rh3BG174900 Rh3CG166000 Rh4DG075500 Rh6BG142500 Rh6DG126600 Rh7AG360800 Rh7AG361000 Rh7BG351300 Rh7BG351500 Rh7CG379200 Rh7CG379500 Rh7DG356100 Rh7DG356300
rosa_wichuraiana	Rw7G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	287
AciI	CCGC	2 cut(s)	93, 197
AcsI	RAATTY	3 cut(s)	238, 260, 356
AcuI	CTGAAG	1 cut(s)	423
AfaI	GTAC	1 cut(s)	152
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	5 cut(s)	23, 113, 237, 318, 395
AluBI	AGCT	1 cut(s)	378
AluI	AGCT	1 cut(s)	378
Alw26I	GTCTC	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	388
ApeKI	GCWGC	2 cut(s)	368, 378
ApoI	RAATTY	3 cut(s)	238, 260, 356
AsiGI	ACCGGT	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	98, 266
AvaII	GGWCC	1 cut(s)	227
BanII	GRGCYC	1 cut(s)	467
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbvI	GCAGC	2 cut(s)	365, 380
BccI	CCATC	3 cut(s)	83, 215, 380
BcoDI	GTCTC	1 cut(s)	20
BfaI	CTAG	4 cut(s)	30, 35, 77, 497
BfmI	CTRYAG	2 cut(s)	366, 480
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	2 cut(s)	369, 379
BlsI	GCNGC	2 cut(s)	370, 380
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	286
BsaAI	YACGTR	1 cut(s)	169
BsaWI	WCCGGW	1 cut(s)	251
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	4 cut(s)	72, 179, 295, 382
Bse3DI	GCAATG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	510
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	3 cut(s)	114, 333, 557
BseNI	ACTGG	4 cut(s)	72, 179, 295, 382
BseXI	GCAGC	2 cut(s)	365, 380
BshTI	ACCGGT	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	252
BsmAI	GTCTC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	467
BspACI	CCGC	2 cut(s)	93, 197
BspCNI	CTCAG	3 cut(s)	115, 334, 558
BspHI	TCATGA	1 cut(s)	456
BspMAI	CTGCAG	1 cut(s)	370
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	4 cut(s)	72, 179, 295, 382
BssAI	RCCGGY	1 cut(s)	251
Bst4CI	ACNGT	2 cut(s)	52, 484
Bst6I	CTCTTC	2 cut(s)	18, 137
BstBAI	YACGTR	1 cut(s)	169
BstDEI	CTNAG	3 cut(s)	123, 342, 566
BstF5I	GGATG	1 cut(s)	510
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstMAI	GTCTC	1 cut(s)	20
BstSFI	CTRYAG	2 cut(s)	366, 480
BstSNI	TACGTA	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	365, 380
BtsCI	GGATG	1 cut(s)	510
BtsIMutI	CAGTG	1 cut(s)	57
CaiI	CAGNNNCTG	1 cut(s)	388
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	251
CviAII	CATG	2 cut(s)	457, 492
CviJI	RGCY	6 cut(s)	33, 371, 378, 465, 496, 559
CviKI_1	RGCY	6 cut(s)	33, 371, 378, 465, 496, 559
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	3 cut(s)	123, 342, 566
DraI	TTTAAA	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	18, 137
EarI	CTCTTC	2 cut(s)	18, 137
EciI	GGCGGA	1 cut(s)	108
Eco105I	TACGTA	1 cut(s)	169
Eco24I	GRGCYC	1 cut(s)	467
Eco32I	GATATC	2 cut(s)	42, 446
Eco47I	GGWCC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	356
EcoRV	GATATC	2 cut(s)	42, 446
EcoT38I	GRGCYC	1 cut(s)	467
FaeI	CATG	2 cut(s)	460, 495
FaiI	YATR	5 cut(s)	166, 279, 305, 458, 493
FatI	CATG	2 cut(s)	456, 491
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	369, 379
FokI	GGATG	1 cut(s)	517
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	2 cut(s)	369, 379
FspBI	CTAG	4 cut(s)	30, 35, 77, 497
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	369, 379
GsuI	CTGGAG	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	460, 495
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	3 cut(s)	11, 125, 412
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	98, 266
Hpy166II	GTNNAC	3 cut(s)	172, 227, 288
Hpy188I	TCNGA	5 cut(s)	16, 355, 390, 551, 567
Hpy188III	TCNNGA	5 cut(s)	129, 265, 441, 457, 502
Hpy8I	GTNNAC	3 cut(s)	172, 227, 288
HpyAV	CCTTC	3 cut(s)	95, 194, 243
HpyCH4III	ACNGT	2 cut(s)	52, 484
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	2 cut(s)	368, 580
HpyF3I	CTNAG	3 cut(s)	123, 342, 566
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	460, 495
HspAI	GCGC	1 cut(s)	120
Lsp1109I	GCAGC	2 cut(s)	365, 380
MaeI	CTAG	4 cut(s)	30, 35, 77, 497
MaeII	ACGT	1 cut(s)	168
MboII	GAAGA	5 cut(s)	16, 35, 151, 154, 327
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	6 cut(s)	18, 238, 260, 313, 356, 575
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	2 cut(s)	515, 552
MnlI	CCTC	7 cut(s)	129, 261, 276, 501, 549, 561, 576
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	378
MspI	CCGG	1 cut(s)	252
NlaIII	CATG	2 cut(s)	460, 495
PagI	TCATGA	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	11, 412
PinAI	ACCGGT	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	370, 380
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	370
PstNI	CAGNNNCTG	1 cut(s)	388
PvuII	CAGCTG	1 cut(s)	378
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	369, 379
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	9 cut(s)	152, 171, 235, 287, 380, 481, 528, 572, 587
SfcI	CTRYAG	2 cut(s)	366, 480
SgrAI	CRCCGGYG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	227
SnaBI	TACGTA	1 cut(s)	169
Sse9I	AATT	6 cut(s)	18, 238, 260, 313, 356, 575
SsiI	CCGC	2 cut(s)	93, 197
SspMI	CTAG	4 cut(s)	30, 35, 77, 497
TaaI	ACNGT	2 cut(s)	52, 484
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	128, 521
TasI	AATT	6 cut(s)	18, 238, 260, 313, 356, 575
TfiI	GAWTC	2 cut(s)	11, 412
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	2 cut(s)	368, 378
TspDTI	ATGAA	4 cut(s)	17, 114, 417, 445
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	3 cut(s)	238, 260, 356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XmiI	GTMKAC	1 cut(s)	287
XspI	CTAG	4 cut(s)	30, 35, 77, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.