Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001132

Physical Location & Seq

Genomic Coordinates Reverse (-)

68631409 .. 68640458

Gene Structure 9050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG475500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAGAGGGATTCTGAAATTGAAGAGACTAGCCTAGTGATATCCCCGACAGTGAAAGAGAGCAATGCTTCCAGTCTAGGAAATGGTGATGGCGGAAATGAAGGAATGATTGAAATAGGCGCTGAGTCGAGAGAGAGGAAGAAGAGTAGGTACTTGTCTTACCCATACGTAAACTGGGGGCAGAAAGGATTGTCTCCGGAAGGAATGGCAGCAACTACTGATGGTGGACCACCTTCAAATTTTAAAAGCACCGGTGAGAAATTCTGGAGGAAATGGCATAGGAGGTTTACTGGTGTGAATAACATATCTGCAGCAACTCATTATCATACCTCAACAATTACCATCATTCAGCTAACAGATACTTTTTATGTCCCATTTCTCTTACACAGAACGAGGCAATCCAAGGATCTTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

138

Amino Acids

15.5

Weight (kDa)

9.22

Isoelectric Point (pI)

59.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48187
fragaria_vesca	FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880
malus_domestica	MD06G1173400.v1.1 MD14G1179900.v1.1
prunus_persica	Prupe.5G172900_v2.0.a1
pyrus_communis	pycom06g15450 pycom06g15460 pycom14g14970
rosa_chinensis	RchiOBHm_Chr3g0469511 RchiOBHm_Chr7g0223481 RchiOBHm_Chr7g0223491 RchiOBHm_Chr7g0232001
rosa_laevigata	RLG00000001961 RLG00000001963
rosa_multiflora	Rmu_co8352987.1_g000001 Rmu_sc0001825.1_g000011 Rmu_sc0002224.1_g000002 Rmu_sc0007408.1_g000001 Rmu_sc0015894.1_g000001 Rmu_sc0023342.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023900 Rroxscaffold_3G00235670 Rroxscaffold_3G00235680 Rroxscaffold_4G00279490
rosa_rugosa	Rorug07G0217400 Rorug07G0217500 Rorug07G0217500 Rorug07G0217600
rosa_samantha	Rh1AG475500 Rh2BG423300 Rh3AG151300 Rh3BG174900 Rh3CG166000 Rh4DG075500 Rh6BG142500 Rh6DG126600 Rh7AG360800 Rh7AG361000 Rh7BG351300 Rh7BG351500 Rh7CG379200 Rh7CG379500 Rh7DG356100 Rh7DG356300
rosa_wichuraiana	Rw7G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	1 cut(s)	414
AcsI	RAATTY	2 cut(s)	238, 260
AfaI	GTAC	1 cut(s)	152
AgeI	ACCGGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	23, 113, 237
AjuI	GAANNNNNNNTTGG	1 cut(s)	395
AluBI	AGCT	1 cut(s)	352
AluI	AGCT	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	20, 198
AlwI	GGATC	1 cut(s)	414
Aor13HI	TCCGGA	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	209, 311
ApoI	RAATTY	2 cut(s)	238, 260
AsiGI	ACCGGT	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	98, 266
AvaII	GGWCC	1 cut(s)	227
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbvI	GCAGC	2 cut(s)	221, 323
BccI	CCATC	3 cut(s)	83, 215, 350
BcoDI	GTCTC	2 cut(s)	20, 198
BfaI	CTAG	4 cut(s)	30, 35, 77, 415
BfmI	CTRYAG	1 cut(s)	309
BfoI	RGCGCY	1 cut(s)	123
BisI	GCNGC	2 cut(s)	210, 312
BlsI	GCNGC	2 cut(s)	211, 313
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	286
BsaAI	YACGTR	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	2 cut(s)	196, 251
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	3 cut(s)	72, 179, 295
Bse3DI	GCAATG	1 cut(s)	70
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	1 cut(s)	402
BseMI	GCAATG	1 cut(s)	70
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	3 cut(s)	72, 179, 295
BseXI	GCAGC	2 cut(s)	221, 323
BshTI	ACCGGT	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	197, 252
BslFI	GGGAC	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	20, 198
BsmFI	GGGAC	1 cut(s)	356
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	1 cut(s)	93
BspCNI	CTCAG	1 cut(s)	115
BspEI	TCCGGA	1 cut(s)	196
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	70
BsrFI	RCCGGY	1 cut(s)	251
BsrI	ACTGG	3 cut(s)	72, 179, 295
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	2 cut(s)	18, 137
BstBAI	YACGTR	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	123
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	2 cut(s)	20, 198
BstMBI	GATC	1 cut(s)	406
BstSFI	CTRYAG	1 cut(s)	309
BstSNI	TACGTA	1 cut(s)	169
BstV1I	GCAGC	2 cut(s)	221, 323
BstX2I	RGATCY	1 cut(s)	406
BstYI	RGATCY	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	57
CfoI	GCGC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	151
CspAI	ACCGGT	1 cut(s)	251
CviJI	RGCY	2 cut(s)	33, 352
CviKI_1	RGCY	2 cut(s)	33, 352
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
DraI	TTTAAA	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	18, 137
EarI	CTCTTC	2 cut(s)	18, 137
EciI	GGCGGA	1 cut(s)	108
Eco105I	TACGTA	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	227
EcoRV	GATATC	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaiI	YATR	5 cut(s)	166, 279, 305, 327, 369
FaqI	GGGAC	1 cut(s)	356
Fnu4HI	GCNGC	2 cut(s)	210, 312
Fsp4HI	GCNGC	2 cut(s)	210, 312
FspBI	CTAG	4 cut(s)	30, 35, 77, 415
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	210, 312
GsuI	CTGGAG	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	123
HapII	CCGG	2 cut(s)	197, 252
HhaI	GCGC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	11, 125
HpaII	CCGG	2 cut(s)	197, 252
HphI	GGTGA	2 cut(s)	98, 266
Hpy166II	GTNNAC	3 cut(s)	172, 227, 288
Hpy188I	TCNGA	1 cut(s)	16
Hpy188III	TCNNGA	3 cut(s)	129, 197, 265
Hpy8I	GTNNAC	3 cut(s)	172, 227, 288
HpyAV	CCTTC	3 cut(s)	95, 194, 243
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	123
HpySE526I	ACGT	1 cut(s)	168
HspAI	GCGC	1 cut(s)	120
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	406
LpnPI	CCDG	6 cut(s)	85, 160, 210, 250, 265, 276
Lsp1109I	GCAGC	2 cut(s)	221, 323
MaeI	CTAG	4 cut(s)	30, 35, 77, 415
MaeII	ACGT	1 cut(s)	168
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	4 cut(s)	16, 35, 151, 154
MflI	RGATCY	1 cut(s)	406
MluCI	AATT	4 cut(s)	18, 238, 260, 336
MlyI	GAGTC	1 cut(s)	134
MnlI	CCTC	5 cut(s)	129, 261, 276, 340, 387
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	1 cut(s)	243
MspI	CCGG	2 cut(s)	197, 252
NdeII	GATC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	11
PinAI	ACCGGT	1 cut(s)	251
PkrI	GCNGC	2 cut(s)	211, 313
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Ppu21I	YACGTR	1 cut(s)	169
PspPI	GGNCC	1 cut(s)	227
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	406
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	2 cut(s)	210, 312
Sau3AI	GATC	1 cut(s)	406
Sau96I	GGNCC	1 cut(s)	227
SchI	GAGTC	1 cut(s)	134
SetI	ASST	6 cut(s)	152, 171, 235, 287, 332, 354
SfcI	CTRYAG	1 cut(s)	309
SgrAI	CRCCGGYG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	227
SnaBI	TACGTA	1 cut(s)	169
Sse9I	AATT	4 cut(s)	18, 238, 260, 336
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	4 cut(s)	30, 35, 77, 415
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	52
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	128
TasI	AATT	4 cut(s)	18, 238, 260, 336
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	57
TseI	GCWGC	2 cut(s)	209, 311
TspDTI	ATGAA	2 cut(s)	17, 114
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	2 cut(s)	238, 260
XcmI	CCANNNNNNNNNTGG	1 cut(s)	171
XspI	CTAG	4 cut(s)	30, 35, 77, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.