Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001825.1

Orthogroup ID

OG0001132

Physical Location & Seq

Genomic Coordinates Reverse (-)

69159 .. 70134

Gene Structure 976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001825.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atgagtgttgcaatcgaggggagaggggcttggtcttgctctttgctgcttgctcgtcgttgttcgccggcctctgggcctcggcgtattgggtccaatatttcgcgacggtggggaacggcgtcaggagctgcttgtagatcggcgccgcctccgagatcggcaaacggcgggcctgattggcgtggctttgcttacatttgggtcctgatggttgaagaatttagagttgggaagatggttgaggatgttagagttgagaagatgatggttgaagacggtagagttgacaggatggttgaatatgatggagttaaggagaaggtggatgaggccaaagcattcgaatcgagtatgatgggtgaagatgatcaagattatgattatgatttttgtgtgggtgatattgtgtgggttaaaaccaaaataaacacatggtggcctgctagaattcatgatcctgcagatgcatcaaagtacggaggaattgaaagtgaccaagaagactgtctgctagttgggtactttgggatgggtcatgttgcttggtgccgtcgataccaactgaagcctttccccagtatttcgagcagatttcagggcagagcaaggctagaattttcattaaagctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PWWP

Protein Analysis

211

Amino Acids

23.84

Weight (kDa)

6.74

Isoelectric Point (pI)

55.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48187
fragaria_vesca	FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_3g28680 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880 FvH4_5g29880
malus_domestica	MD06G1173400.v1.1 MD14G1179900.v1.1
prunus_persica	Prupe.5G172900_v2.0.a1
pyrus_communis	pycom06g15450 pycom06g15460 pycom14g14970
rosa_chinensis	RchiOBHm_Chr3g0469511 RchiOBHm_Chr7g0223481 RchiOBHm_Chr7g0223491 RchiOBHm_Chr7g0232001
rosa_laevigata	RLG00000001961 RLG00000001963
rosa_multiflora	Rmu_co8352987.1_g000001 Rmu_sc0001825.1_g000011 Rmu_sc0002224.1_g000002 Rmu_sc0007408.1_g000001 Rmu_sc0015894.1_g000001 Rmu_sc0023342.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023900 Rroxscaffold_3G00235670 Rroxscaffold_3G00235680 Rroxscaffold_4G00279490
rosa_rugosa	Rorug07G0217400 Rorug07G0217500 Rorug07G0217500 Rorug07G0217600
rosa_samantha	Rh1AG475500 Rh2BG423300 Rh3AG151300 Rh3BG174900 Rh3CG166000 Rh4DG075500 Rh6BG142500 Rh6DG126600 Rh7AG360800 Rh7AG361000 Rh7BG351300 Rh7BG351500 Rh7CG379200 Rh7CG379500 Rh7DG356100 Rh7DG356300
rosa_wichuraiana	Rw7G030680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	145, 549
AccII	CGCG	1 cut(s)	106
AciI	CCGC	2 cut(s)	149, 171
AclWI	GGATC	1 cut(s)	452
AcsI	RAATTY	3 cut(s)	221, 450, 617
AcuI	CTGAAG	1 cut(s)	587
AcyI	GRCGYC	2 cut(s)	122, 146
AdeI	CACNNNGTG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	479, 524
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	218, 275, 302, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	131, 631
AluI	AGCT	2 cut(s)	131, 631
AlwI	GGATC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	131
AoxI	GGCC	5 cut(s)	69, 77, 173, 333, 440
ApeKI	GCWGC	2 cut(s)	46, 131
ApoI	RAATTY	3 cut(s)	221, 450, 617
Asp700I	GAANNNNTTC	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	4 cut(s)	77, 93, 173, 205
AsuHPI	GGTGA	2 cut(s)	374, 413
AsuII	TTCGAA	1 cut(s)	345
AvaII	GGWCC	2 cut(s)	93, 205
BanI	GGYRCC	2 cut(s)	145, 549
BbsI	GAAGAC	2 cut(s)	282, 510
BbvI	GCAGC	2 cut(s)	33, 118
BccI	CCATC	7 cut(s)	205, 232, 262, 289, 302, 352, 526
BceAI	ACGGC	3 cut(s)	135, 184, 537
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	3 cut(s)	447, 515, 614
BfmI	CTRYAG	2 cut(s)	462, 632
BfoI	RGCGCY	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	181
BisI	GCNGC	3 cut(s)	47, 132, 149
BlsI	GCNGC	3 cut(s)	48, 133, 150
Bme18I	GGWCC	2 cut(s)	93, 205
BmgT120I	GGNCC	4 cut(s)	77, 93, 173, 205
BmiI	GGNNCC	4 cut(s)	94, 147, 206, 551
BmrI	ACTGGG	1 cut(s)	573
BmsI	GCATC	2 cut(s)	457, 479
BmuI	ACTGGG	1 cut(s)	573
BpiI	GAAGAC	2 cut(s)	282, 510
Bpu14I	TTCGAA	1 cut(s)	345
BsaHI	GRCGYC	2 cut(s)	122, 146
BsaJI	CCNNGG	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	4 cut(s)	253, 300, 334, 537
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	579
BseXI	GCAGC	2 cut(s)	33, 118
Bsh1236I	CGCG	1 cut(s)	106
BshFI	GGCC	5 cut(s)	71, 79, 175, 335, 442
BshNI	GGYRCC	2 cut(s)	145, 549
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmI	GAATGC	1 cut(s)	341
BsnI	GGCC	5 cut(s)	71, 79, 175, 335, 442
Bsp119I	TTCGAA	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	140, 158, 370, 457
Bsp68I	TCGCGA	1 cut(s)	106
BspACI	CCGC	2 cut(s)	149, 171
BspANI	GGCC	5 cut(s)	71, 79, 175, 335, 442
BspFNI	CGCG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	4 cut(s)	94, 147, 206, 551
BspMAI	CTGCAG	1 cut(s)	466
BspPI	GGATC	1 cut(s)	452
BspT104I	TTCGAA	1 cut(s)	345
BspT107I	GGYRCC	2 cut(s)	145, 549
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	579
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	80
BssMI	GATC	4 cut(s)	140, 158, 370, 457
BssNI	GRCGYC	2 cut(s)	122, 146
Bst4CI	ACNGT	3 cut(s)	111, 281, 509
BstACI	GRCGYC	2 cut(s)	122, 146
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	4 cut(s)	51, 69, 173, 444
BstF5I	GGATG	4 cut(s)	253, 300, 334, 537
BstFNI	CGCG	1 cut(s)	106
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	4 cut(s)	143, 161, 373, 460
BstMBI	GATC	4 cut(s)	140, 158, 370, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 181
BstSFI	CTRYAG	2 cut(s)	462, 632
BstUI	CGCG	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	33, 118
BstV2I	GAAGAC	2 cut(s)	282, 510
BsuRI	GGCC	5 cut(s)	71, 79, 175, 335, 442
BtsCI	GGATG	4 cut(s)	253, 300, 334, 537
BtuMI	TCGCGA	1 cut(s)	106
Cac8I	GCNNGC	4 cut(s)	51, 69, 173, 444
CaiI	CAGNNNCTG	1 cut(s)	131
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	4 cut(s)	77, 93, 173, 205
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	2 cut(s)	478, 523
CviAII	CATG	3 cut(s)	435, 455, 539
CviQI	GTAC	2 cut(s)	478, 523
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	4 cut(s)	142, 160, 372, 459
DpnII	GATC	4 cut(s)	140, 158, 370, 457
DraIII	CACNNNGTG	1 cut(s)	438
Eco47I	GGWCC	2 cut(s)	93, 205
Eco57I	CTGAAG	1 cut(s)	587
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRI	GAATTC	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	472
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
FaeI	CATG	3 cut(s)	438, 458, 542
FaiI	YATR	7 cut(s)	306, 356, 381, 387, 436, 456, 540
FatI	CATG	3 cut(s)	434, 454, 538
FauI	CCCGC	1 cut(s)	164
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	3 cut(s)	47, 132, 149
FokI	GGATG	4 cut(s)	260, 307, 341, 544
Fsp4HI	GCNGC	3 cut(s)	47, 132, 149
FspBI	CTAG	3 cut(s)	447, 515, 614
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	3 cut(s)	47, 132, 149
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	5 cut(s)	71, 79, 175, 335, 442
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	2 cut(s)	122, 146
Hin1II	CATG	3 cut(s)	438, 458, 542
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	347
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	2 cut(s)	374, 413
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	5 cut(s)	105, 126, 208, 374, 455
Hpy8I	GTNNAC	1 cut(s)	289
Hpy99I	CGWCG	3 cut(s)	60, 111, 558
HpyAV	CCTTC	1 cut(s)	316
HpyCH4III	ACNGT	3 cut(s)	111, 281, 509
HpyCH4V	TGCA	3 cut(s)	11, 464, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 181
Hsp92I	GRCGYC	2 cut(s)	122, 146
Hsp92II	CATG	3 cut(s)	438, 458, 542
HspAI	GCGC	1 cut(s)	146
KasI	GGCGCC	1 cut(s)	145
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	4 cut(s)	140, 158, 370, 457
LmnI	GCTCC	1 cut(s)	128
Lsp1109I	GCAGC	2 cut(s)	33, 118
LweI	GCATC	2 cut(s)	457, 479
MaeI	CTAG	3 cut(s)	447, 515, 614
MaeIII	GTNAC	1 cut(s)	494
MalI	GATC	4 cut(s)	142, 160, 372, 459
MboI	GATC	4 cut(s)	140, 158, 370, 457
MboII	GAAGA	6 cut(s)	230, 247, 274, 287, 377, 515
MluCI	AATT	4 cut(s)	221, 450, 486, 617
Mly113I	GGCGCC	1 cut(s)	146
MnlI	CCTC	8 cut(s)	10, 17, 82, 90, 162, 238, 325, 476
Mph1103I	ATGCAT	1 cut(s)	472
MroNI	GCCGGC	1 cut(s)	67
MroXI	GAANNNNTTC	1 cut(s)	572
MseI	TTAA	3 cut(s)	315, 417, 626
MspI	CCGG	1 cut(s)	68
Mva1269I	GAATGC	1 cut(s)	341
MvnI	CGCG	1 cut(s)	106
MwoI	GCNNNNNNNGC	2 cut(s)	128, 181
NaeI	GCCGGC	1 cut(s)	69
NarI	GGCGCC	1 cut(s)	146
NdeII	GATC	4 cut(s)	140, 158, 370, 457
NgoMIV	GCCGGC	1 cut(s)	67
NlaIII	CATG	3 cut(s)	438, 458, 542
NlaIV	GGNNCC	4 cut(s)	94, 147, 206, 551
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	494
NruI	TCGCGA	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	472
NspV	TTCGAA	1 cut(s)	345
PagI	TCATGA	1 cut(s)	454
PctI	GAATGC	1 cut(s)	341
PdiI	GCCGGC	1 cut(s)	69
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	48, 133, 150
PluTI	GGCGCC	1 cut(s)	149
PpuMI	RGGWCCY	1 cut(s)	205
Psp5II	RGGWCCY	1 cut(s)	205
PspN4I	GGNNCC	4 cut(s)	94, 147, 206, 551
PspPI	GGNCC	4 cut(s)	77, 93, 173, 205
PspPPI	RGGWCCY	1 cut(s)	205
PstI	CTGCAG	1 cut(s)	466
PstNI	CAGNNNCTG	1 cut(s)	131
RruI	TCGCGA	1 cut(s)	106
RsaI	GTAC	2 cut(s)	479, 524
RsaNI	GTAC	2 cut(s)	478, 523
SaqAI	TTAA	3 cut(s)	315, 417, 626
SatI	GCNGC	3 cut(s)	47, 132, 149
Sau3AI	GATC	4 cut(s)	140, 158, 370, 457
Sau96I	GGNCC	4 cut(s)	77, 93, 173, 205
SetI	ASST	3 cut(s)	133, 327, 633
SfaNI	GCATC	2 cut(s)	457, 479
SfcI	CTRYAG	2 cut(s)	462, 632
SfoI	GGCGCC	1 cut(s)	147
SfuI	TTCGAA	1 cut(s)	345
SinI	GGWCC	2 cut(s)	93, 205
Sse9I	AATT	4 cut(s)	221, 450, 486, 617
SsiI	CCGC	2 cut(s)	149, 171
SspDI	GGCGCC	1 cut(s)	145
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	3 cut(s)	447, 515, 614
TaaI	ACNGT	3 cut(s)	111, 281, 509
TaqI	TCGA	5 cut(s)	15, 345, 350, 556, 587
TasI	AATT	4 cut(s)	221, 450, 486, 617
TauI	GCSGC	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	3 cut(s)	315, 417, 626
Tru9I	TTAA	3 cut(s)	315, 417, 626
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	2 cut(s)	46, 131
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	2 cut(s)	443, 612
TspGWI	ACGGA	1 cut(s)	495
VpaK11BI	GGWCC	2 cut(s)	93, 205
XapI	RAATTY	3 cut(s)	221, 450, 617
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	3 cut(s)	447, 515, 614
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.